Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:42:40 (3475624): wrapper (7.7.26015): starting
11:42:40 (3475624): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 11:42:40] Arguments: --nthreads 4
[2025-11-27 11:42:40] Threads: 4
[2025-11-27 11:42:40] Checking for CVMFS
[2025-11-27 11:42:40] No cvmfs_config command found, will try listing directly
[2025-11-27 11:42:40] CVMFS is ok
[2025-11-27 11:42:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:42:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:42:40] Further information can be found at the LHC@home message board.
[2025-11-27 11:42:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:42:40] Checking for apptainer binary...
[2025-11-27 11:42:40] which: no apptainer in ((null))
[2025-11-27 11:42:40] apptainer is not installed, using version from CVMFS
[2025-11-27 11:42:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:42:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2025-11-27 11:42:40] apptainer works
[2025-11-27 11:42:40] Set ATHENA_PROC_NUMBER=4
[2025-11-27 11:42:40] Set ATHENA_CORE_NUMBER=4
[2025-11-27 11:42:40] Starting ATLAS job with PandaID=6893857016
[2025-11-27 11:42:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:24:34]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:24:34] 2025-11-28 11:21:29,365 | INFO     | monitor loop #6225: job 0:6893857016 is in state 'finished'
[2025-11-28 12:24:34] 2025-11-28 11:21:29,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:24:34] 2025-11-28 11:21:30,376 | INFO     | time since job start (88718s) is within the limit (172800.0s)
[2025-11-28 12:24:34] 2025-11-28 11:21:30,612 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 12:24:34] 2025-11-28 11:21:30,620 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2594.061
[2025-11-28 12:24:34] 2025-11-28 11:21:30,628 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6893857016/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:24:34] 2025-11-28 11:21:30,629 | INFO     | extracted standard info from prmon json
[2025-11-28 12:24:34] 2025-11-28 11:21:30,629 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:24:34] 2025-11-28 11:21:30,629 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:24:34] 2025-11-28 11:21:30,656 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:24:34] 2025-11-28 11:21:30,658 | INFO     | sum of square deviations: 953155541817.2357
[2025-11-28 12:24:34] 2025-11-28 11:21:30,714 | INFO     | sum of deviations: 3012297175285.9585
[2025-11-28 12:24:34] 2025-11-28 11:21:30,714 | INFO     | mean x: 1764284513.7290235
[2025-11-28 12:24:34] 2025-11-28 11:21:30,714 | INFO     | mean y: 2295005.728335626
[2025-11-28 12:24:34] 2025-11-28 11:21:30,714 | INFO     | intersect: -5573446857.949298
[2025-11-28 12:24:34] 2025-11-28 11:21:30,716 | INFO     | chi2: 3.5778224461092023
[2025-11-28 12:24:34] 2025-11-28 11:21:30,718 | INFO     | sum of square deviations: 943356138714.4703
[2025-11-28 12:24:34] 2025-11-28 11:21:30,773 | INFO     | sum of deviations: 3278526518493.2627
[2025-11-28 12:24:34] 2025-11-28 11:21:30,773 | INFO     | mean x: 1764284361.2298136
[2025-11-28 12:24:34] 2025-11-28 11:21:30,773 | INFO     | mean y: 2299146.966183575
[2025-11-28 12:24:34] 2025-11-28 11:21:30,774 | INFO     | intersect: -6129269649.87994
[2025-11-28 12:24:34] 2025-11-28 11:21:30,776 | INFO     | chi2: 1.8788429323945117
[2025-11-28 12:24:34] 2025-11-28 11:21:30,776 | INFO     | current chi2=1.8788429323945117 (change=47.486412176833724 %)
[2025-11-28 12:24:34] 2025-11-28 11:21:30,778 | INFO     | sum of square deviations: 933624132224.2072
[2025-11-28 12:24:34] 2025-11-28 11:21:30,832 | INFO     | sum of deviations: 3252438550956.9277
[2025-11-28 12:24:34] 2025-11-28 11:21:30,832 | INFO     | mean x: 1764284208.7306094
[2025-11-28 12:24:34] 2025-11-28 11:21:30,832 | INFO     | mean y: 2298738.184903047
[2025-11-28 12:24:34] 2025-11-28 11:21:30,832 | INFO     | intersect: -6143885552.970453
[2025-11-28 12:24:34] 2025-11-28 11:21:30,834 | INFO     | chi2: 1.8780448849115048
[2025-11-28 12:24:34] 2025-11-28 11:21:30,834 | INFO     | current chi2=1.8780448849115048 (change=0.04247547622247784 %)
[2025-11-28 12:24:34] 2025-11-28 11:21:30,835 | INFO     | right removable region: 1443
[2025-11-28 12:24:34] 2025-11-28 11:21:30,837 | INFO     | sum of square deviations: 943355935584.4703
[2025-11-28 12:24:34] 2025-11-28 11:21:30,891 | INFO     | sum of deviations: 2740626675082.161
[2025-11-28 12:24:34] 2025-11-28 11:21:30,891 | INFO     | mean x: 1764284666.2298136
[2025-11-28 12:24:34] 2025-11-28 11:21:30,892 | INFO     | mean y: 2299229.005521049
[2025-11-28 12:24:34] 2025-11-28 11:21:30,892 | INFO     | intersect: -5123280031.5013895
[2025-11-28 12:24:34] 2025-11-28 11:21:30,894 | INFO     | chi2: 1.8188034573881189
[2025-11-28 12:24:34] 2025-11-28 11:21:30,894 | INFO     | current chi2=1.8188034573881189 (change=49.16451319807598 %)
[2025-11-28 12:24:34] 2025-11-28 11:21:30,896 | INFO     | sum of square deviations: 933623991007.5851
[2025-11-28 12:24:34] 2025-11-28 11:21:30,950 | INFO     | sum of deviations: 2686053827963.9194
[2025-11-28 12:24:34] 2025-11-28 11:21:30,950 | INFO     | mean x: 1764284818.7285318
[2025-11-28 12:24:34] 2025-11-28 11:21:30,950 | INFO     | mean y: 2300084.0457063713
[2025-11-28 12:24:34] 2025-11-28 11:21:30,951 | INFO     | intersect: -5073580609.47634
[2025-11-28 12:24:34] 2025-11-28 11:21:30,953 | INFO     | chi2: 1.8047427413779162
[2025-11-28 12:24:34] 2025-11-28 11:21:30,953 | INFO     | current chi2=1.8047427413779162 (change=0.77307506498775 %)
[2025-11-28 12:24:34] 2025-11-28 11:21:30,953 | INFO     | left removable region: 20
[2025-11-28 12:24:34] 2025-11-28 11:21:30,955 | INFO     | sum of square deviations: 893480666248.5894
[2025-11-28 12:24:34] 2025-11-28 11:21:31,007 | INFO     | sum of deviations: 2851221162529.0063
[2025-11-28 12:24:34] 2025-11-28 11:21:31,008 | INFO     | mean x: 1764284788.2255797
[2025-11-28 12:24:34] 2025-11-28 11:21:31,008 | INFO     | mean y: 2304939.0
[2025-11-28 12:24:34] 2025-11-28 11:21:31,008 | INFO     | intersect: -5627773377.117924
[2025-11-28 12:24:34] 2025-11-28 11:21:31,010 | INFO     | chi2: 0.09783207580146594
[2025-11-28 12:24:34] 2025-11-28 11:21:31,010 | INFO     | current memory leak: 3.19 B/s (using 1423 data points, chi2=0.10)
[2025-11-28 12:24:34] 2025-11-28 11:21:31,011 | INFO     | could have reported an average CPU frequency of 2582 MHz (52 samples)
[2025-11-28 12:24:34] 2025-11-28 11:21:31,012 | INFO     | ..............................
[2025-11-28 12:24:34] 2025-11-28 11:21:31,012 | INFO     | . Timing measurements:
[2025-11-28 12:24:34] 2025-11-28 11:21:31,012 | INFO     | . get job = 0 s
[2025-11-28 12:24:34] 2025-11-28 11:21:31,012 | INFO     | . initial setup = 1 s
[2025-11-28 12:24:34] 2025-11-28 11:21:31,012 | INFO     | . payload setup = 5 s
[2025-11-28 12:24:34] 2025-11-28 11:21:31,012 | INFO     | . stage-in = 0 s
[2025-11-28 12:24:34] 2025-11-28 11:21:31,012 | INFO     | . payload execution = 88682 s
[2025-11-28 12:24:34] 2025-11-28 11:21:31,012 | INFO     | . stage-out = 2 s
[2025-11-28 12:24:34] 2025-11-28 11:21:31,013 | INFO     | . log creation = 0 s
[2025-11-28 12:24:34] 2025-11-28 11:21:31,013 | INFO     | ..............................
[2025-11-28 12:24:34] 2025-11-28 11:21:31,122 | INFO     | 
[2025-11-28 12:24:34] 2025-11-28 11:21:31,123 | INFO     | job summary report
[2025-11-28 12:24:34] 2025-11-28 11:21:31,123 | INFO     | --------------------------------------------------
[2025-11-28 12:24:34] 2025-11-28 11:21:31,123 | INFO     | PanDA job id: 6893857016
[2025-11-28 12:24:34] 2025-11-28 11:21:31,124 | INFO     | task id: 47523449
[2025-11-28 12:24:34] 2025-11-28 11:21:31,124 | INFO     | errors: (none)
[2025-11-28 12:24:34] 2025-11-28 11:21:31,124 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:24:34] 2025-11-28 11:21:31,124 | INFO     | pilot state: finished 
[2025-11-28 12:24:34] 2025-11-28 11:21:31,124 | INFO     | transexitcode: 0
[2025-11-28 12:24:34] 2025-11-28 11:21:31,124 | INFO     | exeerrorcode: 0
[2025-11-28 12:24:34] 2025-11-28 11:21:31,124 | INFO     | exeerrordiag: 
[2025-11-28 12:24:34] 2025-11-28 11:21:31,124 | INFO     | exitcode: 0
[2025-11-28 12:24:34] 2025-11-28 11:21:31,125 | INFO     | exitmsg: OK
[2025-11-28 12:24:34] 2025-11-28 11:21:31,125 | INFO     | cpuconsumptiontime: 325826 s
[2025-11-28 12:24:34] 2025-11-28 11:21:31,125 | INFO     | nevents: 1000
[2025-11-28 12:24:34] 2025-11-28 11:21:31,125 | INFO     | neventsw: 0
[2025-11-28 12:24:34] 2025-11-28 11:21:31,125 | INFO     | pid: 3488888
[2025-11-28 12:24:34] 2025-11-28 11:21:31,125 | INFO     | pgrp: 3488888
[2025-11-28 12:24:34] 2025-11-28 11:21:31,125 | INFO     | corecount: 4
[2025-11-28 12:24:34] 2025-11-28 11:21:31,125 | INFO     | event service: False
[2025-11-28 12:24:34] 2025-11-28 11:21:31,126 | INFO     | sizes: {0: 2284212, 1: 2284354, 5: 2284616, 11: 2284672, 88691: 2351930, 88696: 2361130, 88704: 2361320}
[2025-11-28 12:24:34] 2025-11-28 11:21:31,126 | INFO     | --------------------------------------------------
[2025-11-28 12:24:34] 2025-11-28 11:21:31,126 | INFO     | 
[2025-11-28 12:24:34] 2025-11-28 11:21:31,126 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-11-28 12:24:34] 2025-11-28 11:21:31,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,144 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,146 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:24:34] 2025-11-28 11:21:31,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:24:34] 2025-11-28 11:21:31,147 | INFO     | job 6893857016 has completed (purged errors)
[2025-11-28 12:24:34] 2025-11-28 11:21:31,147 | INFO     | overall cleanup function is called
[2025-11-28 12:24:34] 2025-11-28 11:21:32,161 | INFO     | --- collectZombieJob: --- 10, [3488888]
[2025-11-28 12:24:34] 2025-11-28 11:21:32,161 | INFO     | zombie collector waiting for pid 3488888
[2025-11-28 12:24:34] 2025-11-28 11:21:32,161 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:24:34] 2025-11-28 11:21:32,161 | INFO     | collected zombie processes
[2025-11-28 12:24:34] 2025-11-28 11:21:32,161 | INFO     | will attempt to kill all subprocesses of pid=3488888
[2025-11-28 12:24:34] 2025-11-28 11:21:32,490 | INFO     | process IDs to be killed: [3488888] (in reverse order)
[2025-11-28 12:24:34] 2025-11-28 11:21:32,572 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:24:34] 2025-11-28 11:21:32,572 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:24:34] 2025-11-28 11:21:32,581 | INFO     | did not find any defunct processes belonging to 3488888
[2025-11-28 12:24:34] 2025-11-28 11:21:32,589 | INFO     | did not find any defunct processes belonging to 3488888
[2025-11-28 12:24:34] 2025-11-28 11:21:32,590 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:24:34] 2025-11-28 11:21:32,591 | INFO     | ready for new job
[2025-11-28 12:24:34] 2025-11-28 11:21:32,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:24:34] 2025-11-28 11:21:32,597 | INFO     | ***************************************
[2025-11-28 12:24:34] 2025-11-28 11:21:32,597 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:24:34] 2025-11-28 11:21:32,597 | INFO     | ***************************************
[2025-11-28 12:24:34] 2025-11-28 11:21:32,597 | INFO     | 
[2025-11-28 12:24:34] 2025-11-28 11:21:32,600 | INFO     | architecture information:
[2025-11-28 12:24:34] 2025-11-28 11:21:32,600 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:24:34] 2025-11-28 11:21:32,615 | INFO     | cat /etc/os-release:
[2025-11-28 12:24:34] NAME="CentOS Linux"
[2025-11-28 12:24:34] VERSION="7 (Core)"
[2025-11-28 12:24:34] ID="centos"
[2025-11-28 12:24:34] ID_LIKE="rhel fedora"
[2025-11-28 12:24:34] VERSION_ID="7"
[2025-11-28 12:24:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:24:34] ANSI_COLOR="0;31"
[2025-11-28 12:24:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:24:34] HOME_URL="https://www.centos.org/"
[2025-11-28 12:24:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:24:34] 
[2025-11-28 12:24:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:24:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:24:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:24:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:24:34] 
[2025-11-28 12:24:34] 2025-11-28 11:21:32,615 | INFO     | ***************************************
[2025-11-28 12:24:34] 2025-11-28 11:21:33,119 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-11-28 12:24:34] 2025-11-28 11:21:33,133 | INFO     | sufficient remaining disk space (1660378152960 B)
[2025-11-28 12:24:34] 2025-11-28 11:21:33,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:24:34] 2025-11-28 11:21:33,134 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:24:34] 2025-11-28 11:21:33,134 | INFO     | update_server=False
[2025-11-28 12:24:34] 2025-11-28 11:21:33,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:24:34] 2025-11-28 11:21:33,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:24:34] 2025-11-28 11:21:33,135 | INFO     | aborting loop
[2025-11-28 12:24:34] 2025-11-28 11:21:33,151 | INFO     | all payload control threads have been joined
[2025-11-28 12:24:34] 2025-11-28 11:21:33,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:24:34] 2025-11-28 11:21:33,345 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:24:34] 2025-11-28 11:21:33,626 | INFO     | all data control threads have been joined
[2025-11-28 12:24:34] 2025-11-28 11:21:33,802 | INFO     | all job control threads have been joined
[2025-11-28 12:24:34] 2025-11-28 11:21:34,140 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:34,140 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:34,154 | INFO     | [payload] control thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:34,285 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:34,424 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:34,630 | INFO     | [data] control thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:34,806 | INFO     | [job] control thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:34,938 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:34,948 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:35,060 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:35,244 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:35,299 | INFO     | [job] validate thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:35,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:35,511 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:36,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:24:34] 2025-11-28 11:21:37,131 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:21:37,351 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:24:34] 2025-11-28 11:22:03,871 | INFO     | PID=3481718 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 12:24:34] 2025-11-28 11:22:03,871 | INFO     | .. there are 2 such processes running
[2025-11-28 12:24:34] 2025-11-28 11:22:03,871 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:24:34] 2025-11-28 11:22:03,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:24:34] 2025-11-28 11:22:03,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:24:34] 2025-11-28 11:22:21,306 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:24:34] 2025-11-28 11:22:22,367 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23083019454272)>', '<ExcThread(monitor, started 23082773202688)>']
[2025-11-28 12:24:34] 2025-11-28 11:22:22,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:24:34] 2025-11-28 11:22:22,965 | INFO     | [monitor] control thread has ended
[2025-11-28 12:24:34] 2025-11-28 11:22:27,384 | INFO     | all workflow threads have been joined
[2025-11-28 12:24:34] 2025-11-28 11:22:27,384 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:24:34] 2025-11-28 11:22:27,385 | INFO     | traces error code: 0
[2025-11-28 12:24:34] 2025-11-28 11:22:27,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:24:34] 2025-11-28 11:22:27,500 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:24:34] 2025-11-28 11:22:27,502 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:24:34] 2025-11-28 11:22:27,505 [wrapper] pilotpid: 3481718
[2025-11-28 12:24:34] 2025-11-28 11:22:27,507 [wrapper] Pilot exit status: 0
[2025-11-28 12:24:34] 2025-11-28 11:22:27,516 [wrapper] pandaids: 6893857016
[2025-11-28 12:24:34] 2025-11-28 11:22:27,574 [wrapper] cleanup supervisor_pilot  182490 3481719
[2025-11-28 12:24:34] 2025-11-28 11:22:27,576 [wrapper] Test setup, not cleaning
[2025-11-28 12:24:34] 2025-11-28 11:22:27,579 [wrapper] apfmon messages muted
[2025-11-28 12:24:34] 2025-11-28 11:22:27,581 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:24:34] 2025-11-28 11:22:27,583 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:24:34]  *** Error codes and diagnostics ***
[2025-11-28 12:24:34]     "exeErrorCode": 0,
[2025-11-28 12:24:34]     "exeErrorDiag": "",
[2025-11-28 12:24:34]     "pilotErrorCode": 0,
[2025-11-28 12:24:34]     "pilotErrorDiag": "",
[2025-11-28 12:24:34]  *** Listing of results directory ***
[2025-11-28 12:24:34] total 1322616
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:54 queuedata.json
[2025-11-28 12:24:34] -rwx------ 1 boinc boinc     36292 Nov 20 13:55 runpilot2-wrapper.sh
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc       100 Nov 27 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:24:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 10:38 run_atlas
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc       105 Nov 27 10:38 job.xml
[2025-11-28 12:24:34] -rw-r--r-- 2 boinc boinc 410026856 Nov 27 11:42 EVNT.47493127._000472.pool.root.1
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc      6421 Nov 27 11:42 init_data.xml
[2025-11-28 12:24:34] drwxrwx--x 2 boinc boinc      4096 Nov 27 11:42 shared
[2025-11-28 12:24:34] -rw-r--r-- 2 boinc boinc    590105 Nov 27 11:42 input.tar.gz
[2025-11-28 12:24:34] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:42 start_atlas.sh
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc         0 Nov 27 11:42 boinc_lockfile
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc      2786 Nov 27 11:42 pandaJob.out
[2025-11-28 12:24:34] -rw------- 1 boinc boinc    991564 Nov 27 11:42 agis_schedconf.cvmfs.json
[2025-11-28 12:24:34] drwx------ 5 boinc boinc      4096 Nov 27 11:42 pilot3
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc       532 Nov 28 12:15 boinc_task_state.xml
[2025-11-28 12:24:34] -rw------- 1 boinc boinc 911614833 Nov 28 12:20 HITS.47523449._004713.pool.root.1
[2025-11-28 12:24:34] -rw------- 1 boinc boinc      1050 Nov 28 12:21 memory_monitor_summary.json
[2025-11-28 12:24:34] -rw------- 1 boinc boinc   1516240 Nov 28 12:21 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:24:34] -rw------- 1 boinc boinc   2069756 Nov 28 12:21 log.47523449._004713.job.log.tgz.1
[2025-11-28 12:24:34] -rw------- 1 boinc boinc        95 Nov 28 12:21 pilot_heartbeat.json
[2025-11-28 12:24:34] -rw------- 1 boinc boinc      8631 Nov 28 12:21 heartbeat.json
[2025-11-28 12:24:34] -rw------- 1 boinc boinc      4834 Nov 28 12:22 pilotlog.txt
[2025-11-28 12:24:34] -rw------- 1 boinc boinc  12325509 Nov 28 12:22 log.47523449._004713.job.log.1
[2025-11-28 12:24:34] -rw------- 1 boinc boinc       353 Nov 28 12:22 output.list
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc       620 Nov 28 12:22 runtime_log
[2025-11-28 12:24:34] -rw------- 1 boinc boinc  14417920 Nov 28 12:22 result.tar.gz
[2025-11-28 12:24:34] -rw------- 1 boinc boinc       670 Nov 28 12:22 zheMDmcNJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHfGKDmnoRBJm.diag
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc      9206 Nov 28 12:22 runtime_log.err
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc        28 Nov 28 12:24 wrapper_checkpoint.txt
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc      8192 Nov 28 12:24 boinc_mmap_file
[2025-11-28 12:24:34] -rw-r--r-- 1 boinc boinc     21094 Nov 28 12:24 stderr.txt
[2025-11-28 12:24:34] HITS file was successfully produced:
[2025-11-28 12:24:34] -rw------- 1 boinc boinc 911614833 Nov 28 12:20 shared/HITS.pool.root.1
[2025-11-28 12:24:34]  *** Contents of shared directory: ***
[2025-11-28 12:24:34] total 1305356
[2025-11-28 12:24:34] -rw-r--r-- 2 boinc boinc 410026856 Nov 27 11:42 ATLAS.root_0
[2025-11-28 12:24:34] -rw-r--r-- 2 boinc boinc    590105 Nov 27 11:42 input.tar.gz
[2025-11-28 12:24:34] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:42 start_atlas.sh
[2025-11-28 12:24:34] -rw------- 1 boinc boinc 911614833 Nov 28 12:20 HITS.pool.root.1
[2025-11-28 12:24:34] -rw------- 1 boinc boinc  14417920 Nov 28 12:22 result.tar.gz
12:24:36 (3475624): run_atlas exited; CPU time 329017.265873
12:24:36 (3475624): called boinc_finish(0)

</stderr_txt>
]]>

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