Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:13:54 (1141426): wrapper (7.7.26015): starting
20:13:54 (1141426): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 20:13:54] Arguments: --nthreads 3
[2025-11-25 20:13:54] Threads: 3
[2025-11-25 20:13:54] Checking for CVMFS
[2025-11-25 20:13:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:13:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:13:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:13:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:13:54] 2.9.2.0 411005 432 67388 153294 0 16 35288139 36864000 0 130560 0 2171431 99.998 18593 13093 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 20:13:54] CVMFS is ok
[2025-11-25 20:13:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:13:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:13:54] Further information can be found at the LHC@home message board.
[2025-11-25 20:13:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:13:54] Checking for apptainer binary...
[2025-11-25 20:13:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:13:54] Running /usr/bin/apptainer --version
[2025-11-25 20:13:55] apptainer version 1.4.1-1.1
[2025-11-25 20:13:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:13:55] thA335
[2025-11-25 20:13:55] apptainer works
[2025-11-25 20:13:55] Set ATHENA_PROC_NUMBER=3
[2025-11-25 20:13:55] Set ATHENA_CORE_NUMBER=3
[2025-11-25 20:13:55] Starting ATLAS job with PandaID=6895475909
[2025-11-25 20:13:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:18:14]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:18:14] 2025-11-25 19:17:25,627 | INFO     | update_server=False
[2025-11-25 20:18:14] 2025-11-25 19:17:25,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:18:14] 2025-11-25 19:17:25,628 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:18:14] 2025-11-25 19:17:25,628 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:18:14] 2025-11-25 19:17:26,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:18:14] 2025-11-25 19:17:26,064 | INFO     | aborting loop
[2025-11-25 20:18:14] 2025-11-25 19:17:26,112 | INFO     | all data control threads have been joined
[2025-11-25 20:18:14] 2025-11-25 19:17:26,191 | INFO     | all payload control threads have been joined
[2025-11-25 20:18:14] 2025-11-25 19:17:26,633 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:26,634 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:26,926 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:26,982 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,070 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,080 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:18:14] 2025-11-25 19:17:27,118 | INFO     | [data] control thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,128 | INFO     | [job] validate thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,144 | INFO     | all job control threads have been joined
[2025-11-25 20:18:14] 2025-11-25 19:17:27,170 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,197 | INFO     | [payload] control thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,214 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,265 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,430 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:27,740 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:28,150 | INFO     | [job] control thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:29,087 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:29,634 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:18:14] 2025-11-25 19:17:56,217 | INFO     | PID=1145151 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:18:14] 2025-11-25 19:17:56,217 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:18:14] 2025-11-25 19:17:56,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:18:14] 2025-11-25 19:17:56,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:18:14] 2025-11-25 19:18:07,307 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:18:14] 2025-11-25 19:18:09,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140189360428864)>', '<ExcThread(monitor, started 140188722386688)>']
[2025-11-25 20:18:14] 2025-11-25 19:18:09,280 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:18:14] 2025-11-25 19:18:09,280 | INFO     | [monitor] control thread has ended
[2025-11-25 20:18:14] 2025-11-25 19:18:14,078 | INFO     | all workflow threads have been joined
[2025-11-25 20:18:14] 2025-11-25 19:18:14,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:18:14] 2025-11-25 19:18:14,079 | INFO     | traces error code: 0
[2025-11-25 20:18:14] 2025-11-25 19:18:14,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:18:14] 2025-11-25 19:18:14,128 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:18:14] 2025-11-25 19:18:14,131 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:18:14] 2025-11-25 19:18:14,134 [wrapper] pilotpid: 1145151
[2025-11-25 20:18:14] 2025-11-25 19:18:14,136 [wrapper] Pilot exit status: 0
[2025-11-25 20:18:14] 2025-11-25 19:18:14,144 [wrapper] pandaids: 6895475909
[2025-11-25 20:18:14] 2025-11-25 19:18:14,160 [wrapper] cleanup supervisor_pilot 1145157 1145152
[2025-11-25 20:18:14] 2025-11-25 19:18:14,163 [wrapper] Test setup, not cleaning
[2025-11-25 20:18:14] 2025-11-25 19:18:14,166 [wrapper] apfmon messages muted
[2025-11-25 20:18:14] 2025-11-25 19:18:14,169 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:18:14] 2025-11-25 19:18:14,172 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:18:14]  *** Error codes and diagnostics ***
[2025-11-25 20:18:14]     "exeErrorCode": 65,
[2025-11-25 20:18:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:18:14]     "pilotErrorCode": 1305,
[2025-11-25 20:18:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:18:14]  *** Listing of results directory ***
[2025-11-25 20:18:14] total 401544
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc    576529 Nov 24 10:01 pilot3.tar.gz
[2025-11-25 20:18:14] -rwx------ 1 boinc boinc     36292 Nov 24 10:11 runpilot2-wrapper.sh
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc      5112 Nov 24 10:11 queuedata.json
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc       100 Nov 25 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:18:14] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 20:13 run_atlas
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc       105 Nov 25 20:13 job.xml
[2025-11-25 20:18:14] -rw-r--r-- 2 boinc boinc 406979892 Nov 25 20:13 EVNT.47483658._001292.pool.root.1
[2025-11-25 20:18:14] -rw-r--r-- 2 boinc boinc    590099 Nov 25 20:13 input.tar.gz
[2025-11-25 20:18:14] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:13 start_atlas.sh
[2025-11-25 20:18:14] drwxrwx--x 2 boinc boinc      4096 Nov 25 20:13 shared
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:13 boinc_setup_complete
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc      6196 Nov 25 20:13 init_data.xml
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:13 boinc_lockfile
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc      2782 Nov 25 20:13 pandaJob.out
[2025-11-25 20:18:14] -rw------- 1 boinc boinc    991543 Nov 25 20:14 agis_schedconf.cvmfs.json
[2025-11-25 20:18:14] -rw------- 1 boinc boinc   1516240 Nov 25 20:14 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:18:14] drwx------ 5 boinc boinc      4096 Nov 25 20:14 pilot3
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc       523 Nov 25 20:15 boinc_task_state.xml
[2025-11-25 20:18:14] -rw------- 1 boinc boinc       957 Nov 25 20:15 memory_monitor_summary.json
[2025-11-25 20:18:14] -rw------- 1 boinc boinc     55861 Nov 25 20:15 log.47556149._002781.job.log.tgz.1
[2025-11-25 20:18:14] -rw------- 1 boinc boinc        95 Nov 25 20:17 pilot_heartbeat.json
[2025-11-25 20:18:14] -rw------- 1 boinc boinc      8413 Nov 25 20:17 heartbeat.json
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc      8192 Nov 25 20:18 boinc_mmap_file
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc        23 Nov 25 20:18 wrapper_checkpoint.txt
[2025-11-25 20:18:14] -rw------- 1 boinc boinc      4752 Nov 25 20:18 pilotlog.txt
[2025-11-25 20:18:14] -rw------- 1 boinc boinc     93839 Nov 25 20:18 log.47556149._002781.job.log.1
[2025-11-25 20:18:14] -rw------- 1 boinc boinc       186 Nov 25 20:18 output.list
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc       620 Nov 25 20:18 runtime_log
[2025-11-25 20:18:14] -rw------- 1 boinc boinc    174080 Nov 25 20:18 result.tar.gz
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc      8744 Nov 25 20:18 runtime_log.err
[2025-11-25 20:18:14] -rw------- 1 boinc boinc       648 Nov 25 20:18 hadNDmImhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsZLKDmvfs7Qo.diag
[2025-11-25 20:18:14] -rw-r--r-- 1 boinc boinc      7789 Nov 25 20:18 stderr.txt
[2025-11-25 20:18:14] No HITS result produced
[2025-11-25 20:18:14]  *** Contents of shared directory: ***
[2025-11-25 20:18:14] total 398216
[2025-11-25 20:18:14] -rw-r--r-- 2 boinc boinc 406979892 Nov 25 20:13 ATLAS.root_0
[2025-11-25 20:18:14] -rw-r--r-- 2 boinc boinc    590099 Nov 25 20:13 input.tar.gz
[2025-11-25 20:18:14] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:13 start_atlas.sh
[2025-11-25 20:18:14] -rw------- 1 boinc boinc    174080 Nov 25 20:18 result.tar.gz
20:18:16 (1141426): run_atlas exited; CPU time 31.966406
20:18:16 (1141426): called boinc_finish(0)

</stderr_txt>
]]>

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