Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:35:11 (510785): wrapper (7.7.26015): starting
11:35:11 (510785): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 11:35:11] Arguments: --nthreads 12
[2025-11-25 11:35:11] Threads: 12
[2025-11-25 11:35:11] Checking for CVMFS
[2025-11-25 11:35:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:35:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:35:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:35:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:35:14] 2.11.5.0 3877898 27273 193564 153295 2 231 34832738 45568001 31174 130560 0 251792053 99.795 159100526 26575 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 11:35:14] CVMFS is ok
[2025-11-25 11:35:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:35:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:35:14] Further information can be found at the LHC@home message board.
[2025-11-25 11:35:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:35:14] Checking for apptainer binary...
[2025-11-25 11:35:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:35:14] Running /usr/bin/apptainer --version
[2025-11-25 11:35:14] apptainer version 1.4.1-1.el9
[2025-11-25 11:35:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:35:15] wns0033.triumf.lcg
[2025-11-25 11:35:15] apptainer works
[2025-11-25 11:35:15] Set ATHENA_PROC_NUMBER=12
[2025-11-25 11:35:15] Set ATHENA_CORE_NUMBER=12
[2025-11-25 11:35:15] Starting ATLAS job with PandaID=6896764751
[2025-11-25 11:35:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:46:11]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | WARNING  | wrong length of table data, x=[1764099510.0, 1764099571.0, 1764099632.0, 1764099693.0, 1764099754.0], y=[23903.0, 338466.0, 525206.0, 828477.0, 556662.0] (must be 
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | INFO     | ..............................
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . Timing measurements:
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . get job = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . initial setup = 5 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . payload setup = 40 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . stage-in = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . payload execution = 303 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . stage-out = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . log creation = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | ..............................
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896764751/pilotlog.txt
[2025-11-25 11:46:11] 2025-11-25 19:45:18,824 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 11:46:11] - Log from pilotlog.txt -
[2025-11-25 11:46:11] 2025-11-25 19:45:18,623 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896764751/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | INFO     | extracted standard info from prmon json
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | WARNING  | wrong length of table data, x=[1764099510.0, 1764099571.0, 1764099632.0, 1764099693.0, 1764099754.0], y=[23903.0, 338466.0, 525206.0, 828477.0, 556662.0] (must be 
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | INFO     | ..............................
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . Timing measurements:
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . get job = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . initial setup = 5 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . payload setup = 40 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . stage-in = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . payload execution = 303 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . stage-out = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . log creation = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | ..............................
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896764751/pilotlog.txt
[2025-11-25 11:46:11] 2025-11-25 19:45:18,829 | WARNING  | 
[2025-11-25 11:46:11] [begin log extracts]
[2025-11-25 11:46:11] - Log from pilotlog.txt -
[2025-11-25 11:46:11] 2025-11-25 19:45:18,623 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896764751/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | INFO     | extracted standard info from prmon json
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 11:46:11] 2025-11-25 19:45:18,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | WARNING  | wrong length of table data, x=[1764099510.0, 1764099571.0, 1764099632.0, 1764099693.0, 1764099754.0], y=[23903.0, 338466.0, 525206.0, 828477.0, 556662.0] (must be 
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2025-11-25 11:46:11] 2025-11-25 19:45:18,647 | INFO     | ..............................
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . Timing measurements:
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . get job = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . initial setup = 5 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . payload setup = 40 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . stage-in = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . payload execution = 303 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . stage-out = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | . log creation = 0 s
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | ..............................
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 11:46:11] 2025-11-25 19:45:18,648 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896764751/pilotlog.txt
[2025-11-25 11:46:11] [end log extracts]
[2025-11-25 11:46:11] 2025-11-25 19:45:18,830 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 11:46:11] 2025-11-25 19:45:18,830 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 11:46:11] 2025-11-25 19:45:19,188 | INFO     | 
[2025-11-25 11:46:11] 2025-11-25 19:45:19,188 | INFO     | job summary report
[2025-11-25 11:46:11] 2025-11-25 19:45:19,188 | INFO     | --------------------------------------------------
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | PanDA job id: 6896764751
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | task id: 47556185
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 11:42:50,898 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | pilot state: failed 
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | transexitcode: 65
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | exeerrorcode: 65
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | exitcode: 65
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | cpuconsumptiontime: 49 s
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | nevents: 0
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | neventsw: 0
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | pid: 521831
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | pgrp: 521831
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | corecount: 12
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | event service: False
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | sizes: {0: 2283478, 1: 2284160, 2: 2284359, 3: 2284359, 14: 2284387, 25: 2284415, 29: 2284833, 36: 2284861, 345: 2310361, 346: 2310365, 347: 2314711, 349: 2315047,
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | --------------------------------------------------
[2025-11-25 11:46:11] 2025-11-25 19:45:19,189 | INFO     | 
[2025-11-25 11:46:11] 2025-11-25 19:45:19,190 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 11:46:11] 2025-11-25 19:45:19,260 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,261 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:46:11] 2025-11-25 19:45:19,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:46:11] 2025-11-25 19:45:19,262 | INFO     | job 6896764751 has completed (purged errors)
[2025-11-25 11:46:11] 2025-11-25 19:45:19,262 | INFO     | overall cleanup function is called
[2025-11-25 11:46:11] 2025-11-25 19:45:20,269 | INFO     | --- collectZombieJob: --- 10, [521831]
[2025-11-25 11:46:11] 2025-11-25 19:45:20,269 | INFO     | zombie collector waiting for pid 521831
[2025-11-25 11:46:11] 2025-11-25 19:45:20,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:46:11] 2025-11-25 19:45:20,270 | INFO     | collected zombie processes
[2025-11-25 11:46:11] 2025-11-25 19:45:20,270 | INFO     | will attempt to kill all subprocesses of pid=521831
[2025-11-25 11:46:11] 2025-11-25 19:45:20,890 | INFO     | process IDs to be killed: [521831] (in reverse order)
[2025-11-25 11:46:11] 2025-11-25 19:45:20,974 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:46:11] 2025-11-25 19:45:20,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:46:11] 2025-11-25 19:45:20,986 | INFO     | did not find any defunct processes belonging to 521831
[2025-11-25 11:46:11] 2025-11-25 19:45:20,996 | INFO     | did not find any defunct processes belonging to 521831
[2025-11-25 11:46:11] 2025-11-25 19:45:20,997 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:46:11] 2025-11-25 19:45:20,997 | INFO     | ready for new job
[2025-11-25 11:46:11] 2025-11-25 19:45:20,997 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:46:11] 2025-11-25 19:45:20,998 | INFO     | ***************************************
[2025-11-25 11:46:11] 2025-11-25 19:45:20,998 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:46:11] 2025-11-25 19:45:20,998 | INFO     | ***************************************
[2025-11-25 11:46:11] 2025-11-25 19:45:20,998 | INFO     | 
[2025-11-25 11:46:11] 2025-11-25 19:45:21,000 | INFO     | architecture information:
[2025-11-25 11:46:11] 2025-11-25 19:45:21,000 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:46:11] 2025-11-25 19:45:21,015 | INFO     | cat /etc/os-release:
[2025-11-25 11:46:11] NAME="CentOS Linux"
[2025-11-25 11:46:11] VERSION="7 (Core)"
[2025-11-25 11:46:11] ID="centos"
[2025-11-25 11:46:11] ID_LIKE="rhel fedora"
[2025-11-25 11:46:11] VERSION_ID="7"
[2025-11-25 11:46:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:46:11] ANSI_COLOR="0;31"
[2025-11-25 11:46:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:46:11] HOME_URL="https://www.centos.org/"
[2025-11-25 11:46:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:46:11] 
[2025-11-25 11:46:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:46:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:46:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:46:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:46:11] 
[2025-11-25 11:46:11] 2025-11-25 19:45:21,015 | INFO     | ***************************************
[2025-11-25 11:46:11] 2025-11-25 19:45:21,518 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 11:46:11] 2025-11-25 19:45:21,608 | INFO     | sufficient remaining disk space (1791394578432 B)
[2025-11-25 11:46:11] 2025-11-25 19:45:21,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:46:11] 2025-11-25 19:45:21,608 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:46:11] 2025-11-25 19:45:21,608 | INFO     | update_server=False
[2025-11-25 11:46:11] 2025-11-25 19:45:21,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:46:11] 2025-11-25 19:45:21,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:46:11] 2025-11-25 19:45:21,608 | INFO     | aborting loop
[2025-11-25 11:46:11] 2025-11-25 19:45:21,608 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:46:11] 2025-11-25 19:45:21,619 | INFO     | all job control threads have been joined
[2025-11-25 11:46:11] 2025-11-25 19:45:22,016 | INFO     | all payload control threads have been joined
[2025-11-25 11:46:11] 2025-11-25 19:45:22,364 | INFO     | all data control threads have been joined
[2025-11-25 11:46:11] 2025-11-25 19:45:22,613 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:22,614 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:22,625 | INFO     | [job] control thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:22,686 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:22,717 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:22,813 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:22,849 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:22,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:46:11] 2025-11-25 19:45:23,024 | INFO     | [payload] control thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:23,200 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:23,238 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:23,372 | INFO     | [data] control thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:23,422 | INFO     | [job] validate thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:23,569 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:23,617 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:24,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:46:11] 2025-11-25 19:45:25,210 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:26,943 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:46:11] 2025-11-25 19:45:51,725 | INFO     | PID=514669 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 11:46:11] 2025-11-25 19:45:51,726 | INFO     | .. there are 35 such processes running
[2025-11-25 11:46:11] 2025-11-25 19:45:51,726 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:46:11] 2025-11-25 19:45:51,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:46:11] 2025-11-25 19:45:51,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:46:11] 2025-11-25 19:46:03,954 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:46:11] 2025-11-25 19:46:04,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140643297023808)>', '<ExcThread(monitor, started 140642218911488)>']
[2025-11-25 11:46:11] 2025-11-25 19:46:05,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:46:11] 2025-11-25 19:46:05,809 | INFO     | [monitor] control thread has ended
[2025-11-25 11:46:11] 2025-11-25 19:46:10,023 | INFO     | all workflow threads have been joined
[2025-11-25 11:46:11] 2025-11-25 19:46:10,024 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:46:11] 2025-11-25 19:46:10,024 | INFO     | traces error code: 0
[2025-11-25 11:46:11] 2025-11-25 19:46:10,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:46:11] 2025-11-25 19:46:10,468 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:46:11] 2025-11-25 19:46:10,493 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:46:11] 2025-11-25 19:46:10,532 [wrapper] pilotpid: 514669
[2025-11-25 11:46:11] 2025-11-25 19:46:10,548 [wrapper] Pilot exit status: 0
[2025-11-25 11:46:11] 2025-11-25 19:46:10,706 [wrapper] pandaids: 6896764751
[2025-11-25 11:46:11] 2025-11-25 19:46:11,079 [wrapper] cleanup supervisor_pilot  514675 514670
[2025-11-25 11:46:11] 2025-11-25 19:46:11,109 [wrapper] Test setup, not cleaning
[2025-11-25 11:46:11] 2025-11-25 19:46:11,124 [wrapper] apfmon messages muted
[2025-11-25 11:46:11] 2025-11-25 19:46:11,152 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:46:11] 2025-11-25 19:46:11,199 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:46:11]  *** Error codes and diagnostics ***
[2025-11-25 11:46:11]     "exeErrorCode": 65,
[2025-11-25 11:46:11]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 11:46:11]     "pilotErrorCode": 1305,
[2025-11-25 11:46:11]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 11:46:11]  *** Listing of results directory ***
[2025-11-25 11:46:11] total 404968
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc    576529 Nov 25 00:42 pilot3.tar.gz
[2025-11-25 11:46:11] -rwx------. 1 boinc boinc     36292 Nov 25 00:48 runpilot2-wrapper.sh
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc      5112 Nov 25 00:48 queuedata.json
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc       100 Nov 25 11:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:46:11] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 11:35 run_atlas
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc       105 Nov 25 11:35 job.xml
[2025-11-25 11:46:11] -rw-r--r--. 2 boinc boinc 410403462 Nov 25 11:35 EVNT.47483658._004257.pool.root.1
[2025-11-25 11:46:11] -rw-r--r--. 2 boinc boinc     15847 Nov 25 11:35 start_atlas.sh
[2025-11-25 11:46:11] drwxrwx--x. 2 boinc boinc      4096 Nov 25 11:35 shared
[2025-11-25 11:46:11] -rw-r--r--. 2 boinc boinc    590101 Nov 25 11:35 input.tar.gz
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc      6594 Nov 25 11:35 init_data.xml
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc         0 Nov 25 11:35 boinc_lockfile
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc      2781 Nov 25 11:35 pandaJob.out
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc    991893 Nov 25 11:35 agis_schedconf.cvmfs.json
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc   1516240 Nov 25 11:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:46:11] drwx------. 5 boinc boinc      4096 Nov 25 11:36 pilot3
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc       524 Nov 25 11:42 boinc_task_state.xml
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc       995 Nov 25 11:42 memory_monitor_summary.json
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc     52931 Nov 25 11:42 log.47556185._000201.job.log.tgz.1
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc        95 Nov 25 11:45 pilot_heartbeat.json
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc     10339 Nov 25 11:45 heartbeat.json
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc      8192 Nov 25 11:46 boinc_mmap_file
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc        23 Nov 25 11:46 wrapper_checkpoint.txt
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc      4822 Nov 25 11:46 pilotlog.txt
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc    131902 Nov 25 11:46 log.47556185._000201.job.log.1
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc       186 Nov 25 11:46 output.list
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc       620 Nov 25 11:46 runtime_log
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc    204800 Nov 25 11:46 result.tar.gz
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc      8636 Nov 25 11:46 runtime_log.err
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc       645 Nov 25 11:46 nltKDmEu3h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwGMKDmrqT0Qn.diag
[2025-11-25 11:46:11] -rw-r--r--. 1 boinc boinc     22688 Nov 25 11:46 stderr.txt
[2025-11-25 11:46:11] No HITS result produced
[2025-11-25 11:46:11]  *** Contents of shared directory: ***
[2025-11-25 11:46:11] total 401588
[2025-11-25 11:46:11] -rw-r--r--. 2 boinc boinc 410403462 Nov 25 11:35 ATLAS.root_0
[2025-11-25 11:46:11] -rw-r--r--. 2 boinc boinc     15847 Nov 25 11:35 start_atlas.sh
[2025-11-25 11:46:11] -rw-r--r--. 2 boinc boinc    590101 Nov 25 11:35 input.tar.gz
[2025-11-25 11:46:11] -rw-------. 1 boinc boinc    204800 Nov 25 11:46 result.tar.gz
11:46:13 (510785): run_atlas exited; CPU time 60.928293
11:46:13 (510785): called boinc_finish(0)

</stderr_txt>
]]>

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