Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:15 (3333130): wrapper (7.7.26015): starting
00:01:15 (3333130): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 00:01:15] Arguments: --nthreads 12
[2025-11-26 00:01:15] Threads: 12
[2025-11-26 00:01:15] Checking for CVMFS
[2025-11-26 00:01:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:18] 2.13.2.0 4057 32454 193324 153309 2 328 22985184 39288832 8650 16776704 0 23428402 99.665 19343335 38374 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:01:18] CVMFS is ok
[2025-11-26 00:01:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:18] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:18] Checking for apptainer binary...
[2025-11-26 00:01:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:18] Running /usr/bin/apptainer --version
[2025-11-26 00:01:18] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:19] c-210-24.aglt2.org
[2025-11-26 00:01:19] apptainer works
[2025-11-26 00:01:19] Set ATHENA_PROC_NUMBER=12
[2025-11-26 00:01:19] Set ATHENA_CORE_NUMBER=12
[2025-11-26 00:01:19] Starting ATLAS job with PandaID=6894238269
[2025-11-26 00:01:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:01:44]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:01:44] 2025-11-27 11:01:10,441 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0525499999994
[2025-11-27 06:01:44] 2025-11-27 11:01:10,447 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894238269/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:01:44] 2025-11-27 11:01:10,448 | INFO     | extracted standard info from prmon json
[2025-11-27 06:01:44] 2025-11-27 11:01:10,449 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:01:44] 2025-11-27 11:01:10,449 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:01:44] 2025-11-27 11:01:10,449 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-27 06:01:44] 2025-11-27 11:01:10,449 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-27 06:01:44] 2025-11-27 11:01:10,481 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:01:44] 2025-11-27 11:01:10,483 | INFO     | sum of square deviations: 1707802433892.229
[2025-11-27 06:01:44] 2025-11-27 11:01:10,585 | INFO     | sum of deviations: 2620799389362.7803
[2025-11-27 06:01:44] 2025-11-27 11:01:10,586 | INFO     | mean x: 1764187386.366931
[2025-11-27 06:01:44] 2025-11-27 11:01:10,586 | INFO     | mean y: 2770039.694790487
[2025-11-27 06:01:44] 2025-11-27 11:01:10,586 | INFO     | intersect: -2704557888.380843
[2025-11-27 06:01:44] 2025-11-27 11:01:10,589 | INFO     | chi2: 4.338813245188129
[2025-11-27 06:01:44] 2025-11-27 11:01:10,592 | INFO     | sum of square deviations: 1693337712600.696
[2025-11-27 06:01:44] 2025-11-27 11:01:10,682 | INFO     | sum of deviations: 2733345138994.289
[2025-11-27 06:01:44] 2025-11-27 11:01:10,683 | INFO     | mean x: 1764187233.8688245
[2025-11-27 06:01:44] 2025-11-27 11:01:10,683 | INFO     | mean y: 2771223.222032936
[2025-11-27 06:01:44] 2025-11-27 11:01:10,683 | INFO     | intersect: -2844937514.4314313
[2025-11-27 06:01:44] 2025-11-27 11:01:10,686 | INFO     | chi2: 3.6355540711040817
[2025-11-27 06:01:44] 2025-11-27 11:01:10,686 | INFO     | current chi2=3.6355540711040817 (change=16.208560598084805 %)
[2025-11-27 06:01:44] 2025-11-27 11:01:10,686 | INFO     | right removable region: 1760
[2025-11-27 06:01:44] 2025-11-27 11:01:10,689 | INFO     | sum of square deviations: 1693336886415.949
[2025-11-27 06:01:44] 2025-11-27 11:01:10,774 | INFO     | sum of deviations: 2093604862228.1602
[2025-11-27 06:01:44] 2025-11-27 11:01:10,775 | INFO     | mean x: 1764187538.8693924
[2025-11-27 06:01:44] 2025-11-27 11:01:10,775 | INFO     | mean y: 2775594.687677456
[2025-11-27 06:01:44] 2025-11-27 11:01:10,775 | INFO     | intersect: -2178427471.807162
[2025-11-27 06:01:44] 2025-11-27 11:01:10,778 | INFO     | chi2: 1.5775756754676027
[2025-11-27 06:01:44] 2025-11-27 11:01:10,778 | INFO     | current chi2=1.5775756754676027 (change=63.64038767473617 %)
[2025-11-27 06:01:44] 2025-11-27 11:01:10,781 | INFO     | sum of square deviations: 1678953354995.9128
[2025-11-27 06:01:44] 2025-11-27 11:01:10,898 | INFO     | sum of deviations: 1876259406724.6438
[2025-11-27 06:01:44] 2025-11-27 11:01:10,899 | INFO     | mean x: 1764187691.3712983
[2025-11-27 06:01:44] 2025-11-27 11:01:10,899 | INFO     | mean y: 2777898.3103644648
[2025-11-27 06:01:44] 2025-11-27 11:01:10,899 | INFO     | intersect: -1968732353.1887245
[2025-11-27 06:01:44] 2025-11-27 11:01:10,902 | INFO     | chi2: 1.1709519109498094
[2025-11-27 06:01:44] 2025-11-27 11:01:10,903 | INFO     | current chi2=1.1709519109498094 (change=25.77523036397399 %)
[2025-11-27 06:01:44] 2025-11-27 11:01:10,905 | INFO     | sum of square deviations: 1664651499281.8542
[2025-11-27 06:01:44] 2025-11-27 11:01:10,992 | INFO     | sum of deviations: 1707171949442.661
[2025-11-27 06:01:44] 2025-11-27 11:01:10,992 | INFO     | mean x: 1764187843.8732152
[2025-11-27 06:01:44] 2025-11-27 11:01:10,992 | INFO     | mean y: 2779701.291262136
[2025-11-27 06:01:44] 2025-11-27 11:01:10,993 | INFO     | intersect: -1806471064.9546382
[2025-11-27 06:01:44] 2025-11-27 11:01:10,995 | INFO     | chi2: 0.9482257323177223
[2025-11-27 06:01:44] 2025-11-27 11:01:10,996 | INFO     | current chi2=0.9482257323177223 (change=19.020950096184936 %)
[2025-11-27 06:01:44] 2025-11-27 11:01:10,996 | INFO     | left removable region: 30
[2025-11-27 06:01:44] 2025-11-27 11:01:10,998 | INFO     | sum of square deviations: 1605472403417.031
[2025-11-27 06:01:44] 2025-11-27 11:01:11,005 | INFO     | monitor loop #6444: job 0:6894238269 is in state 'finished'
[2025-11-27 06:01:44] 2025-11-27 11:01:11,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:01:44] 2025-11-27 11:01:11,082 | INFO     | sum of deviations: 1638340212029.6106
[2025-11-27 06:01:44] 2025-11-27 11:01:11,083 | INFO     | mean x: 1764188118.3739884
[2025-11-27 06:01:44] 2025-11-27 11:01:11,083 | INFO     | mean y: 2782856.2046242775
[2025-11-27 06:01:44] 2025-11-27 11:01:11,083 | INFO     | intersect: -1797522355.9966328
[2025-11-27 06:01:44] 2025-11-27 11:01:11,086 | INFO     | chi2: 0.059256315730633814
[2025-11-27 06:01:44] 2025-11-27 11:01:11,086 | INFO     | current memory leak: 1.02 B/s (using 1730 data points, chi2=0.06)
[2025-11-27 06:01:44] 2025-11-27 11:01:11,088 | INFO     | could have reported an average CPU frequency of 2600 MHz (62 samples)
[2025-11-27 06:01:44] 2025-11-27 11:01:11,088 | INFO     | ..............................
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | . Timing measurements:
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | . get job = 0 s
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | . initial setup = 11 s
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | . payload setup = 49 s
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | . stage-in = 1 s
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | . payload execution = 107710 s
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | . stage-out = 4 s
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | . log creation = 0 s
[2025-11-27 06:01:44] 2025-11-27 11:01:11,089 | INFO     | ..............................
[2025-11-27 06:01:44] 2025-11-27 11:01:11,332 | INFO     | 
[2025-11-27 06:01:44] 2025-11-27 11:01:11,333 | INFO     | job summary report
[2025-11-27 06:01:44] 2025-11-27 11:01:11,333 | INFO     | --------------------------------------------------
[2025-11-27 06:01:44] 2025-11-27 11:01:11,333 | INFO     | PanDA job id: 6894238269
[2025-11-27 06:01:44] 2025-11-27 11:01:11,333 | INFO     | task id: 47523675
[2025-11-27 06:01:44] 2025-11-27 11:01:11,333 | INFO     | errors: (none)
[2025-11-27 06:01:44] 2025-11-27 11:01:11,333 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:01:44] 2025-11-27 11:01:11,333 | INFO     | pilot state: finished 
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | transexitcode: 0
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | exeerrorcode: 0
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | exeerrordiag: 
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | exitcode: 0
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | exitmsg: OK
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | cpuconsumptiontime: 160706 s
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | nevents: 400
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | neventsw: 0
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | pid: 3344965
[2025-11-27 06:01:44] 2025-11-27 11:01:11,334 | INFO     | pgrp: 3344965
[2025-11-27 06:01:44] 2025-11-27 11:01:11,335 | INFO     | corecount: 12
[2025-11-27 06:01:44] 2025-11-27 11:01:11,335 | INFO     | event service: False
[2025-11-27 06:01:44] 2025-11-27 11:01:11,335 | INFO     | sizes: {0: 2283072, 1: 2283673, 2: 2283785, 3: 2283785, 4: 2283984, 5: 2284012, 17: 2284196, 28: 2284224, 39: 2284252, 49: 2284542, 50: 2284570, 107764: 2358642, 1
[2025-11-27 06:01:44] 2025-11-27 11:01:11,335 | INFO     | --------------------------------------------------
[2025-11-27 06:01:44] 2025-11-27 11:01:11,335 | INFO     | 
[2025-11-27 06:01:44] 2025-11-27 11:01:11,335 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 06:01:44] 2025-11-27 11:01:11,664 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,664 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,664 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,664 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,665 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,666 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,666 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,666 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:01:44] 2025-11-27 11:01:11,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,666 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:01:44] 2025-11-27 11:01:11,666 | INFO     | job 6894238269 has completed (purged errors)
[2025-11-27 06:01:44] 2025-11-27 11:01:11,667 | INFO     | overall cleanup function is called
[2025-11-27 06:01:44] 2025-11-27 11:01:12,677 | INFO     | --- collectZombieJob: --- 10, [3344965]
[2025-11-27 06:01:44] 2025-11-27 11:01:12,677 | INFO     | zombie collector waiting for pid 3344965
[2025-11-27 06:01:44] 2025-11-27 11:01:12,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:01:44] 2025-11-27 11:01:12,678 | INFO     | collected zombie processes
[2025-11-27 06:01:44] 2025-11-27 11:01:12,678 | INFO     | will attempt to kill all subprocesses of pid=3344965
[2025-11-27 06:01:44] 2025-11-27 11:01:13,336 | INFO     | process IDs to be killed: [3344965] (in reverse order)
[2025-11-27 06:01:44] 2025-11-27 11:01:13,569 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:01:44] 2025-11-27 11:01:13,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:01:44] 2025-11-27 11:01:13,580 | INFO     | did not find any defunct processes belonging to 3344965
[2025-11-27 06:01:44] 2025-11-27 11:01:13,591 | INFO     | did not find any defunct processes belonging to 3344965
[2025-11-27 06:01:44] 2025-11-27 11:01:13,593 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:01:44] 2025-11-27 11:01:13,594 | INFO     | ready for new job
[2025-11-27 06:01:44] 2025-11-27 11:01:13,594 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:01:44] 2025-11-27 11:01:13,603 | INFO     | ***************************************
[2025-11-27 06:01:44] 2025-11-27 11:01:13,603 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:01:44] 2025-11-27 11:01:13,603 | INFO     | ***************************************
[2025-11-27 06:01:44] 2025-11-27 11:01:13,603 | INFO     | 
[2025-11-27 06:01:44] 2025-11-27 11:01:13,605 | INFO     | architecture information:
[2025-11-27 06:01:44] 2025-11-27 11:01:13,606 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:01:44] 2025-11-27 11:01:13,627 | INFO     | cat /etc/os-release:
[2025-11-27 06:01:44] NAME="CentOS Linux"
[2025-11-27 06:01:44] VERSION="7 (Core)"
[2025-11-27 06:01:44] ID="centos"
[2025-11-27 06:01:44] ID_LIKE="rhel fedora"
[2025-11-27 06:01:44] VERSION_ID="7"
[2025-11-27 06:01:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:01:44] ANSI_COLOR="0;31"
[2025-11-27 06:01:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:01:44] HOME_URL="https://www.centos.org/"
[2025-11-27 06:01:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:01:44] 
[2025-11-27 06:01:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:01:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:01:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:01:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:01:44] 
[2025-11-27 06:01:44] 2025-11-27 11:01:13,628 | INFO     | ***************************************
[2025-11-27 06:01:44] 2025-11-27 11:01:14,131 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 06:01:44] 2025-11-27 11:01:14,370 | INFO     | sufficient remaining disk space (50955550720 B)
[2025-11-27 06:01:44] 2025-11-27 11:01:14,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:01:44] 2025-11-27 11:01:14,370 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:01:44] 2025-11-27 11:01:14,370 | INFO     | update_server=False
[2025-11-27 06:01:44] 2025-11-27 11:01:14,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:01:44] 2025-11-27 11:01:14,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:01:44] 2025-11-27 11:01:14,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:01:44] 2025-11-27 11:01:14,535 | INFO     | aborting loop
[2025-11-27 06:01:44] 2025-11-27 11:01:14,585 | INFO     | all job control threads have been joined
[2025-11-27 06:01:44] 2025-11-27 11:01:14,705 | INFO     | all data control threads have been joined
[2025-11-27 06:01:44] 2025-11-27 11:01:15,376 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:15,445 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:15,461 | INFO     | [job] validate thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:15,541 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:15,591 | INFO     | [job] control thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:15,615 | INFO     | all payload control threads have been joined
[2025-11-27 06:01:44] 2025-11-27 11:01:15,712 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:15,717 | INFO     | [data] control thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:15,964 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:16,093 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:16,351 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:01:44] 2025-11-27 11:01:16,356 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:16,520 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:16,621 | INFO     | [payload] control thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:16,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:01:44] 2025-11-27 11:01:16,862 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:16,871 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:17,357 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:20,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:01:44] 2025-11-27 11:01:27,760 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:01:44] 2025-11-27 11:01:28,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139842029516608)>', '<ExcThread(monitor, started 139841316583168)>']
[2025-11-27 06:01:44] 2025-11-27 11:01:33,737 | INFO     | all workflow threads have been joined
[2025-11-27 06:01:44] 2025-11-27 11:01:33,737 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:01:44] 2025-11-27 11:01:33,738 | INFO     | traces error code: 0
[2025-11-27 06:01:44] 2025-11-27 11:01:33,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:01:44] 2025-11-27 11:01:43,837 | INFO     | PID=3336900 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 06:01:44] 2025-11-27 11:01:43,837 | INFO     | .. there are 9 such processes running
[2025-11-27 06:01:44] 2025-11-27 11:01:43,837 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:01:44] 2025-11-27 11:01:43,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:01:44] 2025-11-27 11:01:43,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:01:44] 2025-11-27 11:01:43,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:01:44] 2025-11-27 11:01:43,838 | INFO     | [monitor] control thread has ended
[2025-11-27 06:01:44] 2025-11-27 11:01:44,006 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:01:44] 2025-11-27 11:01:44,009 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:01:44] 2025-11-27 11:01:44,012 [wrapper] pilotpid: 3336900
[2025-11-27 06:01:44] 2025-11-27 11:01:44,016 [wrapper] Pilot exit status: 0
[2025-11-27 06:01:44] 2025-11-27 11:01:44,032 [wrapper] pandaids: 6894238269
[2025-11-27 06:01:44] 2025-11-27 11:01:44,097 [wrapper] cleanup supervisor_pilot 1754763 3336901
[2025-11-27 06:01:44] 2025-11-27 11:01:44,101 [wrapper] Test setup, not cleaning
[2025-11-27 06:01:44] 2025-11-27 11:01:44,104 [wrapper] apfmon messages muted
[2025-11-27 06:01:44] 2025-11-27 11:01:44,107 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:01:44] 2025-11-27 11:01:44,111 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:01:44]  *** Error codes and diagnostics ***
[2025-11-27 06:01:44]     "exeErrorCode": 0,
[2025-11-27 06:01:44]     "exeErrorDiag": "",
[2025-11-27 06:01:44]     "pilotErrorCode": 0,
[2025-11-27 06:01:44]     "pilotErrorDiag": "",
[2025-11-27 06:01:44]  *** Listing of results directory ***
[2025-11-27 06:01:44] total 638992
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 16:08 pilot3.tar.gz
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 16:16 queuedata.json
[2025-11-27 06:01:44] -rwx------. 1 boincer umatlas     36292 Nov 24 16:20 runpilot2-wrapper.sh
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:01:44] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 06:01:44] -rw-r--r--. 2 boincer umatlas 281027544 Nov 26 00:01 EVNT.47523673._000002.pool.root.1
[2025-11-27 06:01:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 06:01:44] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 06:01:44] -rw-r--r--. 2 boincer umatlas    589943 Nov 26 00:01 input.tar.gz
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas      2613 Nov 26 00:01 pandaJob.out
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-27 06:01:44] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas 339174769 Nov 27 05:59 HITS.47523675._000049.pool.root.1
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas       532 Nov 27 05:59 boinc_task_state.xml
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas      1045 Nov 27 06:00 memory_monitor_summary.json
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas   1516240 Nov 27 06:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas   1723470 Nov 27 06:00 log.47523675._000049.job.log.tgz.1
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas        95 Nov 27 06:00 pilot_heartbeat.json
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas      6659 Nov 27 06:01 init_data.xml
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas      7831 Nov 27 06:01 heartbeat.json
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 06:01 boinc_mmap_file
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas        29 Nov 27 06:01 wrapper_checkpoint.txt
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas       822 Nov 27 06:01 pilotlog.txt
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas  13381542 Nov 27 06:01 log.47523675._000049.job.log.1
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas       357 Nov 27 06:01 output.list
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas       620 Nov 27 06:01 runtime_log
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas  15124480 Nov 27 06:01 result.tar.gz
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas       662 Nov 27 06:01 Z97KDmBAth8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsCJKDmicSPSm.diag
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas      9346 Nov 27 06:01 runtime_log.err
[2025-11-27 06:01:44] -rw-r--r--. 1 boincer umatlas     21139 Nov 27 06:01 stderr.txt
[2025-11-27 06:01:44] HITS file was successfully produced:
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas 339174769 Nov 27 05:59 shared/HITS.pool.root.1
[2025-11-27 06:01:44]  *** Contents of shared directory: ***
[2025-11-27 06:01:44] total 621048
[2025-11-27 06:01:44] -rw-r--r--. 2 boincer umatlas 281027544 Nov 26 00:01 ATLAS.root_0
[2025-11-27 06:01:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 06:01:44] -rw-r--r--. 2 boincer umatlas    589943 Nov 26 00:01 input.tar.gz
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas 339174769 Nov 27 05:59 HITS.pool.root.1
[2025-11-27 06:01:44] -rw-------. 1 boincer umatlas  15124480 Nov 27 06:01 result.tar.gz
06:01:46 (3333130): run_atlas exited; CPU time 164045.191180
06:01:46 (3333130): called boinc_finish(0)

</stderr_txt>
]]>

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