Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
20:46:16 (854602): wrapper (7.7.26015): starting
20:46:16 (854602): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 20:46:16] Arguments: --nthreads 4
[2025-11-27 20:46:16] Threads: 4
[2025-11-27 20:46:16] Checking for CVMFS
[2025-11-27 20:46:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:46:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:46:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:46:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:46:16] 2.12.7.0 1898503 13716 57588 153383 1 81 3360450 4096001 846 130560 56 8421459 99.924 799827 421 http://s1fnal-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.210:3128 1
[2025-11-27 20:46:16] CVMFS is ok
[2025-11-27 20:46:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:46:16] Checking for apptainer binary...
[2025-11-27 20:46:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:46:16] Running /usr/bin/apptainer --version
[2025-11-27 20:46:16] apptainer version 1.4.2
[2025-11-27 20:46:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:46:17] TC-910
[2025-11-27 20:46:17] apptainer works
[2025-11-27 20:46:17] Set ATHENA_PROC_NUMBER=4
[2025-11-27 20:46:17] Set ATHENA_CORE_NUMBER=4
[2025-11-27 20:46:17] Starting ATLAS job with PandaID=6894238268
[2025-11-27 20:46:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:10:00 (2003): wrapper (7.7.26015): starting
21:10:00 (2003): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 21:10:00] Arguments: --nthreads 4
[2025-11-27 21:10:00] Threads: 4
[2025-11-27 21:10:00] This job has been restarted, cleaning up previous attempt
[2025-11-27 21:10:00] Checking for CVMFS
[2025-11-27 21:10:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:10:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:10:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:10:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:10:02] 2.12.7.0 2143 0 30216 153383 4 1 2587059 4096000 0 130560 0 0 100.000 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2025-11-27 21:10:02] CVMFS is ok
[2025-11-27 21:10:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:10:02] Checking for apptainer binary...
[2025-11-27 21:10:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 21:10:02] Running /usr/bin/apptainer --version
[2025-11-27 21:10:03] apptainer version 1.4.2
[2025-11-27 21:10:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:10:03] TC-910
[2025-11-27 21:10:03] apptainer works
[2025-11-27 21:10:03] Set ATHENA_PROC_NUMBER=4
[2025-11-27 21:10:03] Set ATHENA_CORE_NUMBER=4
[2025-11-27 21:10:03] Starting ATLAS job with PandaID=6894238268
[2025-11-27 21:10:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:48:02]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:48:02] 2025-11-28 02:47:23,920 | INFO     | time since job start (23826s) is within the limit (172800.0s)
[2025-11-28 03:48:02] 2025-11-28 02:47:24,981 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 03:48:02] 2025-11-28 02:47:24,983 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 4000.0808749999997
[2025-11-28 03:48:02] 2025-11-28 02:47:24,984 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-6894238268/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:48:02] 2025-11-28 02:47:24,984 | INFO     | extracted standard info from prmon json
[2025-11-28 03:48:02] 2025-11-28 02:47:24,984 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:48:02] 2025-11-28 02:47:24,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:48:02] 2025-11-28 02:47:24,985 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-28 03:48:02] 2025-11-28 02:47:24,985 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-28 03:48:02] 2025-11-28 02:47:24,989 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:48:02] 2025-11-28 02:47:24,990 | INFO     | sum of square deviations: 18535566140.0
[2025-11-28 03:48:02] 2025-11-28 02:47:24,992 | INFO     | sum of deviations: -4539091190.999996
[2025-11-28 03:48:02] 2025-11-28 02:47:24,993 | INFO     | mean x: 1764286134.0
[2025-11-28 03:48:02] 2025-11-28 02:47:24,993 | INFO     | mean y: 2421859.6061381074
[2025-11-28 03:48:02] 2025-11-28 02:47:24,993 | INFO     | intersect: 434469933.4958758
[2025-11-28 03:48:02] 2025-11-28 02:47:24,993 | INFO     | chi2: 1.9790834233142252
[2025-11-28 03:48:02] 2025-11-28 02:47:24,993 | INFO     | sum of square deviations: 17833534372.5
[2025-11-28 03:48:02] 2025-11-28 02:47:24,996 | INFO     | sum of deviations: 18742297244.500023
[2025-11-28 03:48:02] 2025-11-28 02:47:24,996 | INFO     | mean x: 1764285981.5
[2025-11-28 03:48:02] 2025-11-28 02:47:24,996 | INFO     | mean y: 2426864.816062176
[2025-11-28 03:48:02] 2025-11-28 02:47:24,996 | INFO     | intersect: -1851763762.7337806
[2025-11-28 03:48:02] 2025-11-28 02:47:24,997 | INFO     | chi2: 1.3232378137089769
[2025-11-28 03:48:02] 2025-11-28 02:47:24,997 | INFO     | current chi2=1.3232378137089769 (change=33.1388561936895 %)
[2025-11-28 03:48:02] 2025-11-28 02:47:24,997 | INFO     | sum of square deviations: 17149456430.0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,000 | INFO     | sum of deviations: 18505596351.999996
[2025-11-28 03:48:02] 2025-11-28 02:47:25,000 | INFO     | mean x: 1764285829.0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,000 | INFO     | mean y: 2426812.0446194224
[2025-11-28 03:48:02] 2025-11-28 02:47:25,000 | INFO     | intersect: -1901374718.5924475
[2025-11-28 03:48:02] 2025-11-28 02:47:25,000 | INFO     | chi2: 1.3234105506326788
[2025-11-28 03:48:02] 2025-11-28 02:47:25,000 | INFO     | current chi2=1.3234105506326788 (change=-0.013054110297658851 %)
[2025-11-28 03:48:02] 2025-11-28 02:47:25,000 | INFO     | right removable region: 380
[2025-11-28 03:48:02] 2025-11-28 02:47:25,001 | INFO     | sum of square deviations: 17833534372.5
[2025-11-28 03:48:02] 2025-11-28 02:47:25,003 | INFO     | sum of deviations: -49200458412.0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,003 | INFO     | mean x: 1764286286.5
[2025-11-28 03:48:02] 2025-11-28 02:47:25,004 | INFO     | mean y: 2431486.233160622
[2025-11-28 03:48:02] 2025-11-28 02:47:25,004 | INFO     | intersect: 4869873477.970919
[2025-11-28 03:48:02] 2025-11-28 02:47:25,004 | INFO     | chi2: 0.7102380584685619
[2025-11-28 03:48:02] 2025-11-28 02:47:25,004 | INFO     | current chi2=0.7102380584685619 (change=64.11277816277303 %)
[2025-11-28 03:48:02] 2025-11-28 02:47:25,004 | INFO     | sum of square deviations: 17149456430.0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,007 | INFO     | sum of deviations: -51701421873.0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,007 | INFO     | mean x: 1764286439.0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,007 | INFO     | mean y: 2432035.3963254592
[2025-11-28 03:48:02] 2025-11-28 02:47:25,007 | INFO     | intersect: 5321324669.6832695
[2025-11-28 03:48:02] 2025-11-28 02:47:25,007 | INFO     | chi2: 0.6964377656639671
[2025-11-28 03:48:02] 2025-11-28 02:47:25,008 | INFO     | current chi2=0.6964377656639671 (change=1.9430517190745116 %)
[2025-11-28 03:48:02] 2025-11-28 02:47:25,008 | INFO     | left removable region: 20
[2025-11-28 03:48:02] 2025-11-28 02:47:25,008 | INFO     | sum of square deviations: 14467136370.0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,010 | INFO     | sum of deviations: -23432948578.0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,010 | INFO     | mean x: 1764286408.5
[2025-11-28 03:48:02] 2025-11-28 02:47:25,010 | INFO     | mean y: 2436291.038888889
[2025-11-28 03:48:02] 2025-11-28 02:47:25,010 | INFO     | intersect: 2860115352.734552
[2025-11-28 03:48:02] 2025-11-28 02:47:25,011 | INFO     | chi2: 0.031096787124358486
[2025-11-28 03:48:02] 2025-11-28 02:47:25,011 | INFO     | current memory leak: -1.62 B/s (using 360 data points, chi2=0.03)
[2025-11-28 03:48:02] 2025-11-28 02:47:25,011 | INFO     | could have reported an average CPU frequency of 4009 MHz (17 samples)
[2025-11-28 03:48:02] 2025-11-28 02:47:25,011 | INFO     | ..............................
[2025-11-28 03:48:02] 2025-11-28 02:47:25,011 | INFO     | . Timing measurements:
[2025-11-28 03:48:02] 2025-11-28 02:47:25,012 | INFO     | . get job = 0 s
[2025-11-28 03:48:02] 2025-11-28 02:47:25,012 | INFO     | . initial setup = 1 s
[2025-11-28 03:48:02] 2025-11-28 02:47:25,012 | INFO     | . payload setup = 7 s
[2025-11-28 03:48:02] 2025-11-28 02:47:25,012 | INFO     | . stage-in = 0 s
[2025-11-28 03:48:02] 2025-11-28 02:47:25,012 | INFO     | . payload execution = 23796 s
[2025-11-28 03:48:02] 2025-11-28 02:47:25,012 | INFO     | . stage-out = 0 s
[2025-11-28 03:48:02] 2025-11-28 02:47:25,012 | INFO     | . log creation = 0 s
[2025-11-28 03:48:02] 2025-11-28 02:47:25,012 | INFO     | ..............................
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | 
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | job summary report
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | --------------------------------------------------
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | PanDA job id: 6894238268
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | task id: 47523675
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | errors: (none)
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | pilot state: finished 
[2025-11-28 03:48:02] 2025-11-28 02:47:25,385 | INFO     | transexitcode: 0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | exeerrorcode: 0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | exeerrordiag: 
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | exitcode: 0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | exitmsg: OK
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | cpuconsumptiontime: 92783 s
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | nevents: 400
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | neventsw: 0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | pid: 12603
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | pgrp: 12603
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | corecount: 4
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | event service: False
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | sizes: {0: 2283901, 1: 2283901, 3: 2284191, 11: 2284219, 23807: 2319350, 23810: 2328350, 23812: 2328534, 23815: 2328792}
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | --------------------------------------------------
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | 
[2025-11-28 03:48:02] 2025-11-28 02:47:25,386 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,398 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | job 6894238268 has completed (purged errors)
[2025-11-28 03:48:02] 2025-11-28 02:47:25,399 | INFO     | overall cleanup function is called
[2025-11-28 03:48:02] 2025-11-28 02:47:26,405 | INFO     | --- collectZombieJob: --- 10, [12603]
[2025-11-28 03:48:02] 2025-11-28 02:47:26,406 | INFO     | zombie collector waiting for pid 12603
[2025-11-28 03:48:02] 2025-11-28 02:47:26,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:48:02] 2025-11-28 02:47:26,406 | INFO     | collected zombie processes
[2025-11-28 03:48:02] 2025-11-28 02:47:26,406 | INFO     | will attempt to kill all subprocesses of pid=12603
[2025-11-28 03:48:02] 2025-11-28 02:47:26,469 | INFO     | process IDs to be killed: [12603] (in reverse order)
[2025-11-28 03:48:02] 2025-11-28 02:47:26,493 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:48:02] 2025-11-28 02:47:26,493 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:48:02] 2025-11-28 02:47:26,495 | INFO     | did not find any defunct processes belonging to 12603
[2025-11-28 03:48:02] 2025-11-28 02:47:26,497 | INFO     | did not find any defunct processes belonging to 12603
[2025-11-28 03:48:02] 2025-11-28 02:47:26,498 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:48:02] 2025-11-28 02:47:26,498 | INFO     | ready for new job
[2025-11-28 03:48:02] 2025-11-28 02:47:26,498 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:48:02] 2025-11-28 02:47:26,500 | INFO     | ***************************************
[2025-11-28 03:48:02] 2025-11-28 02:47:26,500 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:48:02] 2025-11-28 02:47:26,500 | INFO     | ***************************************
[2025-11-28 03:48:02] 2025-11-28 02:47:26,500 | INFO     | 
[2025-11-28 03:48:02] 2025-11-28 02:47:26,500 | INFO     | architecture information:
[2025-11-28 03:48:02] 2025-11-28 02:47:26,500 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:48:02] 2025-11-28 02:47:26,508 | INFO     | cat /etc/os-release:
[2025-11-28 03:48:02] NAME="CentOS Linux"
[2025-11-28 03:48:02] VERSION="7 (Core)"
[2025-11-28 03:48:02] ID="centos"
[2025-11-28 03:48:02] ID_LIKE="rhel fedora"
[2025-11-28 03:48:02] VERSION_ID="7"
[2025-11-28 03:48:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:48:02] ANSI_COLOR="0;31"
[2025-11-28 03:48:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:48:02] HOME_URL="https://www.centos.org/"
[2025-11-28 03:48:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:48:02] 
[2025-11-28 03:48:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:48:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:48:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:48:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:48:02] 
[2025-11-28 03:48:02] 2025-11-28 02:47:26,508 | INFO     | ***************************************
[2025-11-28 03:48:02] 2025-11-28 02:47:27,011 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2025-11-28 03:48:02] 2025-11-28 02:47:27,019 | INFO     | sufficient remaining disk space (124022423552 B)
[2025-11-28 03:48:02] 2025-11-28 02:47:27,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:48:02] 2025-11-28 02:47:27,019 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:48:02] 2025-11-28 02:47:27,019 | INFO     | update_server=False
[2025-11-28 03:48:02] 2025-11-28 02:47:27,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:48:02] 2025-11-28 02:47:27,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:48:02] 2025-11-28 02:47:27,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:48:02] 2025-11-28 02:47:27,020 | INFO     | aborting loop
[2025-11-28 03:48:02] 2025-11-28 02:47:27,249 | INFO     | all payload control threads have been joined
[2025-11-28 03:48:02] 2025-11-28 02:47:27,309 | INFO     | all data control threads have been joined
[2025-11-28 03:48:02] 2025-11-28 02:47:27,554 | INFO     | all job control threads have been joined
[2025-11-28 03:48:02] 2025-11-28 02:47:27,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:48:02] 2025-11-28 02:47:28,025 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,025 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,025 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,037 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,046 | INFO     | [job] validate thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,095 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,126 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:48:02] 2025-11-28 02:47:28,254 | INFO     | [payload] control thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,314 | INFO     | [data] control thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,393 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,559 | INFO     | [job] control thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:28,959 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:29,129 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:29,289 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:29,778 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:32,230 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:48:02] 2025-11-28 02:47:56,329 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:48:02] 2025-11-28 02:47:57,064 | INFO     | PID=6179 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 03:48:02] 2025-11-28 02:47:57,064 | INFO     | .. there are 2 such processes running
[2025-11-28 03:48:02] 2025-11-28 02:47:57,065 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:48:02] 2025-11-28 02:47:57,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:48:02] 2025-11-28 02:47:57,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:48:02] 2025-11-28 02:47:57,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140579426760512)>', '<ExcThread(monitor, started 140578415167232)>']
[2025-11-28 03:48:02] 2025-11-28 02:47:58,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:48:02] 2025-11-28 02:47:58,067 | INFO     | [monitor] control thread has ended
[2025-11-28 03:48:02] 2025-11-28 02:48:02,729 | INFO     | all workflow threads have been joined
[2025-11-28 03:48:02] 2025-11-28 02:48:02,729 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:48:02] 2025-11-28 02:48:02,729 | INFO     | traces error code: 0
[2025-11-28 03:48:02] 2025-11-28 02:48:02,729 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:48:02] 2025-11-28 02:48:02,798 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:48:02] 2025-11-28 02:48:02,800 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:48:02] 2025-11-28 02:48:02,801 [wrapper] pilotpid: 6179
[2025-11-28 03:48:02] 2025-11-28 02:48:02,803 [wrapper] Pilot exit status: 0
[2025-11-28 03:48:02] 2025-11-28 02:48:02,808 [wrapper] pandaids: 6894238268 6894238268
[2025-11-28 03:48:02] 2025-11-28 02:48:02,825 [wrapper] cleanup supervisor_pilot   99229 6180
[2025-11-28 03:48:02] 2025-11-28 02:48:02,826 [wrapper] Test setup, not cleaning
[2025-11-28 03:48:02] 2025-11-28 02:48:02,828 [wrapper] apfmon messages muted
[2025-11-28 03:48:02] 2025-11-28 02:48:02,830 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:48:02] 2025-11-28 02:48:02,831 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:48:02]  *** Error codes and diagnostics ***
[2025-11-28 03:48:02]     "exeErrorCode": 0,
[2025-11-28 03:48:02]     "exeErrorDiag": "",
[2025-11-28 03:48:02]     "pilotErrorCode": 0,
[2025-11-28 03:48:02]     "pilotErrorDiag": "",
[2025-11-28 03:48:02]  *** Listing of results directory ***
[2025-11-28 03:48:02] insgesamt 891244
[2025-11-28 03:48:02] drwx------ 5 boinc boinc      4096  5. Nov 18:16 pilot3
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc    576529 24. Nov 22:08 pilot3.tar.gz
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc      5112 24. Nov 22:16 queuedata.json
[2025-11-28 03:48:02] -rwx------ 1 boinc boinc     36292 24. Nov 22:20 runpilot2-wrapper.sh
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc       100 27. Nov 20:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:48:02] -rwxr-xr-x 1 boinc boinc      7986 27. Nov 20:46 run_atlas
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc       105 27. Nov 20:46 job.xml
[2025-11-28 03:48:02] -rw-r--r-- 3 boinc boinc 281027544 27. Nov 20:46 EVNT.47523673._000002.pool.root.1
[2025-11-28 03:48:02] -rw-r--r-- 3 boinc boinc 281027544 27. Nov 20:46 ATLAS.root_0
[2025-11-28 03:48:02] drwxrwx--x 2 boinc boinc      4096 27. Nov 20:46 shared
[2025-11-28 03:48:02] -rw-r--r-- 2 boinc boinc    589943 27. Nov 20:46 input.tar.gz
[2025-11-28 03:48:02] -rw-r--r-- 2 boinc boinc     15847 27. Nov 20:46 start_atlas.sh
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc         0 27. Nov 20:46 boinc_lockfile
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc      2613 27. Nov 21:10 pandaJob.out
[2025-11-28 03:48:02] -rw------- 1 boinc boinc        52 27. Nov 21:10 setup.sh.local
[2025-11-28 03:48:02] -rw------- 1 boinc boinc    991191 27. Nov 21:10 agis_schedconf.cvmfs.json
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc      9858 28. Nov 01:47 init_data.xml
[2025-11-28 03:48:02] -rw------- 1 boinc boinc 338799834 28. Nov 03:46 HITS.47523675._000048.pool.root.1
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc       531 28. Nov 03:46 boinc_task_state.xml
[2025-11-28 03:48:02] -rw------- 1 boinc boinc      1030 28. Nov 03:47 memory_monitor_summary.json
[2025-11-28 03:48:02] -rw------- 1 boinc boinc   1516240 28. Nov 03:47 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:48:02] -rw------- 1 boinc boinc    542653 28. Nov 03:47 log.47523675._000048.job.log.tgz.1
[2025-11-28 03:48:02] -rw------- 1 boinc boinc      7768 28. Nov 03:47 heartbeat.json
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc      8192 28. Nov 03:47 boinc_mmap_file
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc        28 28. Nov 03:47 wrapper_checkpoint.txt
[2025-11-28 03:48:02] -rw------- 1 boinc boinc        96 28. Nov 03:47 pilot_heartbeat.json
[2025-11-28 03:48:02] -rw------- 1 boinc boinc      4822 28. Nov 03:48 pilotlog.txt
[2025-11-28 03:48:02] -rw------- 1 boinc boinc   3385115 28. Nov 03:48 log.47523675._000048.job.log.1
[2025-11-28 03:48:02] -rw------- 1 boinc boinc       357 28. Nov 03:48 output.list
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc       620 28. Nov 03:48 runtime_log
[2025-11-28 03:48:02] -rw------- 1 boinc boinc   3942400 28. Nov 03:48 result.tar.gz
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc      9376 28. Nov 03:48 runtime_log.err
[2025-11-28 03:48:02] -rw------- 1 boinc boinc       778 28. Nov 03:48 ni6KDmBAth8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrCJKDma58win.diag
[2025-11-28 03:48:02] -rw-r--r-- 1 boinc boinc     22675 28. Nov 03:48 stderr.txt
[2025-11-28 03:48:02] HITS file was successfully produced:
[2025-11-28 03:48:02] -rw------- 1 boinc boinc 338799834 28. Nov 03:46 shared/HITS.pool.root.1
[2025-11-28 03:48:02]  *** Contents of shared directory: ***
[2025-11-28 03:48:02] insgesamt 609760
[2025-11-28 03:48:02] -rw-r--r-- 3 boinc boinc 281027544 27. Nov 20:46 ATLAS.root_0
[2025-11-28 03:48:02] -rw-r--r-- 2 boinc boinc    589943 27. Nov 20:46 input.tar.gz
[2025-11-28 03:48:02] -rw-r--r-- 2 boinc boinc     15847 27. Nov 20:46 start_atlas.sh
[2025-11-28 03:48:02] -rw------- 1 boinc boinc 338799834 28. Nov 03:46 HITS.pool.root.1
[2025-11-28 03:48:02] -rw------- 1 boinc boinc   3942400 28. Nov 03:48 result.tar.gz
03:48:04 (2003): run_atlas exited; CPU time 93020.952962
03:48:04 (2003): called boinc_finish(0)

</stderr_txt>
]]>

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