Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:56:32 (597278): wrapper (7.7.26015): starting
13:56:32 (597278): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:56:32] Arguments: --nthreads 8
[2025-11-25 13:56:32] Threads: 8
[2025-11-25 13:56:32] Checking for CVMFS
[2025-11-25 13:56:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:56:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:56:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:56:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:56:33] 2.13.3.0 11900 28999 394924 153293 2 402 23909519 32935937 35238 16776704 0 154283447 99.513 191399807 34095 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 13:56:33] CVMFS is ok
[2025-11-25 13:56:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:56:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:56:33] Further information can be found at the LHC@home message board.
[2025-11-25 13:56:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:56:33] Checking for apptainer binary...
[2025-11-25 13:56:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:56:33] Running /usr/bin/apptainer --version
[2025-11-25 13:56:33] apptainer version 1.4.4-1.el9
[2025-11-25 13:56:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:56:34] c6-12-27-1.aglt2.org
[2025-11-25 13:56:34] apptainer works
[2025-11-25 13:56:34] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:56:34] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:56:34] Starting ATLAS job with PandaID=6895558274
[2025-11-25 13:56:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:23:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:23:55] 2025-11-26 08:22:41,205 | INFO     | monitor loop #2455: job 0:6895558274 is in state 'finished'
[2025-11-26 03:23:55] 2025-11-26 08:22:41,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:55] 2025-11-26 08:22:41,330 | INFO     | time since job start (48326s) is within the limit (172800.0s)
[2025-11-26 03:23:55] 2025-11-26 08:22:43,338 | INFO     | time since job start (48328s) is within the limit (172800.0s)
[2025-11-26 03:23:55] 2025-11-26 08:22:43,710 | INFO     | monitor loop #2456: job 0:6895558274 is in state 'finished'
[2025-11-26 03:23:55] 2025-11-26 08:22:43,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:55] 2025-11-26 08:22:45,345 | INFO     | time since job start (48330s) is within the limit (172800.0s)
[2025-11-26 03:23:55] 2025-11-26 08:22:46,215 | INFO     | monitor loop #2457: job 0:6895558274 is in state 'finished'
[2025-11-26 03:23:55] 2025-11-26 08:22:46,215 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:55] 2025-11-26 08:22:47,354 | INFO     | time since job start (48332s) is within the limit (172800.0s)
[2025-11-26 03:23:55] 2025-11-26 08:22:48,720 | INFO     | monitor loop #2458: job 0:6895558274 is in state 'finished'
[2025-11-26 03:23:55] 2025-11-26 08:22:48,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:55] 2025-11-26 08:22:49,361 | INFO     | time since job start (48334s) is within the limit (172800.0s)
[2025-11-26 03:23:55] 2025-11-26 08:22:51,233 | INFO     | monitor loop #2459: job 0:6895558274 is in state 'finished'
[2025-11-26 03:23:55] 2025-11-26 08:22:51,233 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:55] 2025-11-26 08:22:51,367 | INFO     | time since job start (48336s) is within the limit (172800.0s)
[2025-11-26 03:23:55] 2025-11-26 08:22:53,295 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 03:23:55] 2025-11-26 08:22:53,322 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2674.092145833334
[2025-11-26 03:23:55] 2025-11-26 08:22:53,372 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895558274/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:23:55] 2025-11-26 08:22:53,401 | INFO     | extracted standard info from prmon json
[2025-11-26 03:23:55] 2025-11-26 08:22:53,401 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:23:55] 2025-11-26 08:22:53,401 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:23:55] 2025-11-26 08:22:53,430 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:23:55] 2025-11-26 08:22:53,432 | INFO     | sum of square deviations: 153447435560.8978
[2025-11-26 03:23:55] 2025-11-26 08:22:53,438 | INFO     | time since job start (48338s) is within the limit (172800.0s)
[2025-11-26 03:23:55] 2025-11-26 08:22:53,464 | INFO     | sum of deviations: 444696580342.61725
[2025-11-26 03:23:55] 2025-11-26 08:22:53,464 | INFO     | mean x: 1764121215.011378
[2025-11-26 03:23:55] 2025-11-26 08:22:53,464 | INFO     | mean y: 2868458.7092288244
[2025-11-26 03:23:55] 2025-11-26 08:22:53,464 | INFO     | intersect: -5109622791.195585
[2025-11-26 03:23:55] 2025-11-26 08:22:53,465 | INFO     | chi2: 14.41000348246674
[2025-11-26 03:23:55] 2025-11-26 08:22:53,466 | INFO     | sum of square deviations: 150556080528.04083
[2025-11-26 03:23:55] 2025-11-26 08:22:53,494 | INFO     | sum of deviations: 713755334692.2122
[2025-11-26 03:23:55] 2025-11-26 08:22:53,494 | INFO     | mean x: 1764121062.524173
[2025-11-26 03:23:55] 2025-11-26 08:22:53,494 | INFO     | mean y: 2882645.5941475825
[2025-11-26 03:23:55] 2025-11-26 08:22:53,494 | INFO     | intersect: -8360451568.496311
[2025-11-26 03:23:55] 2025-11-26 08:22:53,495 | INFO     | chi2: 10.9802372028898
[2025-11-26 03:23:55] 2025-11-26 08:22:53,495 | INFO     | current chi2=10.9802372028898 (change=23.80128695839721 %)
[2025-11-26 03:23:55] 2025-11-26 08:22:53,495 | INFO     | right removable region: 785
[2025-11-26 03:23:55] 2025-11-26 08:22:53,500 | INFO     | sum of square deviations: 150555110018.04068
[2025-11-26 03:23:55] 2025-11-26 08:22:53,526 | INFO     | sum of deviations: 192517629109.47565
[2025-11-26 03:23:55] 2025-11-26 08:22:53,526 | INFO     | mean x: 1764121367.524173
[2025-11-26 03:23:55] 2025-11-26 08:22:53,526 | INFO     | mean y: 2881746.5012722644
[2025-11-26 03:23:55] 2025-11-26 08:22:53,527 | INFO     | intersect: -2252933171.3479013
[2025-11-26 03:23:55] 2025-11-26 08:22:53,528 | INFO     | chi2: 11.77901867374134
[2025-11-26 03:23:55] 2025-11-26 08:22:53,528 | INFO     | current chi2=11.77901867374134 (change=18.25804422550369 %)
[2025-11-26 03:23:55] 2025-11-26 08:22:53,536 | INFO     | left removable region: 10
[2025-11-26 03:23:55] 2025-11-26 08:22:53,537 | INFO     | sum of square deviations: 144322278106.19354
[2025-11-26 03:23:55] 2025-11-26 08:22:53,564 | INFO     | sum of deviations: 444922166527.0649
[2025-11-26 03:23:55] 2025-11-26 08:22:53,565 | INFO     | mean x: 1764121337.032258
[2025-11-26 03:23:55] 2025-11-26 08:22:53,565 | INFO     | mean y: 2902565.7174193547
[2025-11-26 03:23:55] 2025-11-26 08:22:53,565 | INFO     | intersect: -5435597280.518939
[2025-11-26 03:23:55] 2025-11-26 08:22:53,570 | INFO     | chi2: 7.570587220233237
[2025-11-26 03:23:55] 2025-11-26 08:22:53,571 | INFO     | current memory leak: 3.08 B/s (using 775 data points, chi2=7.57)
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | could have reported an average CPU frequency of 2657 MHz (30 samples)
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | ..............................
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | . Timing measurements:
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | . get job = 0 s
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | . initial setup = 4 s
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | . payload setup = 22 s
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | . stage-in = 0 s
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | . payload execution = 48219 s
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | . stage-out = 14 s
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | . log creation = 4 s
[2025-11-26 03:23:55] 2025-11-26 08:22:53,572 | INFO     | ..............................
[2025-11-26 03:23:55] 2025-11-26 08:22:53,942 | INFO     | 
[2025-11-26 03:23:55] 2025-11-26 08:22:53,942 | INFO     | job summary report
[2025-11-26 03:23:55] 2025-11-26 08:22:53,942 | INFO     | --------------------------------------------------
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | PanDA job id: 6895558274
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | task id: 47556149
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | errors: (none)
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | pilot state: finished 
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | transexitcode: 0
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | exeerrorcode: 0
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | exeerrordiag: 
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | exitcode: 0
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | exitmsg: OK
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | cpuconsumptiontime: 261394 s
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | nevents: 1000
[2025-11-26 03:23:55] 2025-11-26 08:22:53,943 | INFO     | neventsw: 0
[2025-11-26 03:23:55] 2025-11-26 08:22:53,944 | INFO     | pid: 610635
[2025-11-26 03:23:55] 2025-11-26 08:22:53,944 | INFO     | pgrp: 610635
[2025-11-26 03:23:55] 2025-11-26 08:22:53,944 | INFO     | corecount: 8
[2025-11-26 03:23:55] 2025-11-26 08:22:53,944 | INFO     | event service: False
[2025-11-26 03:23:55] 2025-11-26 08:22:53,944 | INFO     | sizes: {0: 2284144, 1: 2284343, 2: 2284343, 12: 2284371, 20: 2284661, 24: 2284689, 48246: 2331121, 48247: 2331120, 48262: 2340198, 48264: 2340254, 48297: 2340500}
[2025-11-26 03:23:55] 2025-11-26 08:22:53,944 | INFO     | --------------------------------------------------
[2025-11-26 03:23:55] 2025-11-26 08:22:53,944 | INFO     | 
[2025-11-26 03:23:55] 2025-11-26 08:22:53,944 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 03:23:55] 2025-11-26 08:22:54,045 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,046 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:23:55] 2025-11-26 08:22:54,047 | INFO     | job 6895558274 has completed (purged errors)
[2025-11-26 03:23:55] 2025-11-26 08:22:54,048 | INFO     | overall cleanup function is called
[2025-11-26 03:23:55] 2025-11-26 08:22:55,077 | INFO     | --- collectZombieJob: --- 10, [610635]
[2025-11-26 03:23:55] 2025-11-26 08:22:55,077 | INFO     | zombie collector waiting for pid 610635
[2025-11-26 03:23:55] 2025-11-26 08:22:55,077 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:23:55] 2025-11-26 08:22:55,078 | INFO     | collected zombie processes
[2025-11-26 03:23:55] 2025-11-26 08:22:55,078 | INFO     | will attempt to kill all subprocesses of pid=610635
[2025-11-26 03:23:55] 2025-11-26 08:22:56,716 | INFO     | process IDs to be killed: [610635] (in reverse order)
[2025-11-26 03:23:55] 2025-11-26 08:22:57,344 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:23:55] 2025-11-26 08:22:57,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:23:55] 2025-11-26 08:22:57,395 | INFO     | did not find any defunct processes belonging to 610635
[2025-11-26 03:23:55] 2025-11-26 08:22:57,446 | INFO     | did not find any defunct processes belonging to 610635
[2025-11-26 03:23:55] 2025-11-26 08:22:57,472 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:23:55] 2025-11-26 08:22:57,473 | INFO     | ready for new job
[2025-11-26 03:23:55] 2025-11-26 08:22:57,473 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:23:55] 2025-11-26 08:22:57,500 | INFO     | ***************************************
[2025-11-26 03:23:55] 2025-11-26 08:22:57,500 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:23:55] 2025-11-26 08:22:57,500 | INFO     | ***************************************
[2025-11-26 03:23:55] 2025-11-26 08:22:57,500 | INFO     | 
[2025-11-26 03:23:55] 2025-11-26 08:22:57,532 | INFO     | architecture information:
[2025-11-26 03:23:55] 2025-11-26 08:22:57,558 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:23:55] 2025-11-26 08:22:57,592 | INFO     | cat /etc/os-release:
[2025-11-26 03:23:55] NAME="CentOS Linux"
[2025-11-26 03:23:55] VERSION="7 (Core)"
[2025-11-26 03:23:55] ID="centos"
[2025-11-26 03:23:55] ID_LIKE="rhel fedora"
[2025-11-26 03:23:55] VERSION_ID="7"
[2025-11-26 03:23:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:23:55] ANSI_COLOR="0;31"
[2025-11-26 03:23:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:23:55] HOME_URL="https://www.centos.org/"
[2025-11-26 03:23:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:23:55] 
[2025-11-26 03:23:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:23:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:23:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:23:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:23:55] 
[2025-11-26 03:23:55] 2025-11-26 08:22:57,593 | INFO     | ***************************************
[2025-11-26 03:23:55] 2025-11-26 08:22:58,096 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 03:23:55] 2025-11-26 08:22:58,186 | INFO     | sufficient remaining disk space (88061509632 B)
[2025-11-26 03:23:55] 2025-11-26 08:22:58,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:23:55] 2025-11-26 08:22:58,186 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:23:55] 2025-11-26 08:22:58,186 | INFO     | update_server=False
[2025-11-26 03:23:55] 2025-11-26 08:22:58,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:23:55] 2025-11-26 08:22:58,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:23:55] 2025-11-26 08:22:58,187 | INFO     | aborting loop
[2025-11-26 03:23:55] 2025-11-26 08:22:58,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:23:55] 2025-11-26 08:22:58,319 | INFO     | all job control threads have been joined
[2025-11-26 03:23:55] 2025-11-26 08:22:58,595 | INFO     | all data control threads have been joined
[2025-11-26 03:23:55] 2025-11-26 08:22:58,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:23:55] 2025-11-26 08:22:59,192 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,193 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,260 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,317 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,338 | INFO     | [job] control thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,584 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:23:55] 2025-11-26 08:22:59,612 | INFO     | [data] control thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,689 | INFO     | all payload control threads have been joined
[2025-11-26 03:23:55] 2025-11-26 08:22:59,779 | INFO     | [job] validate thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,780 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,788 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,789 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:22:59,893 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:23:00,194 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:23:00,695 | INFO     | [payload] control thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:23:00,715 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:23:00,745 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:23:03,654 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:23:55] 2025-11-26 08:23:36,298 | INFO     | PID=601191 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 03:23:55] 2025-11-26 08:23:36,298 | INFO     | .. there are 51 such processes running
[2025-11-26 03:23:55] 2025-11-26 08:23:36,365 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:23:55] 2025-11-26 08:23:36,366 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:23:55] 2025-11-26 08:23:36,366 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:23:55] 2025-11-26 08:23:46,701 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:23:55] 2025-11-26 08:23:47,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140105976055616)>', '<ExcThread(monitor, started 140105616434944)>']
[2025-11-26 03:23:55] 2025-11-26 08:23:48,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:23:55] 2025-11-26 08:23:48,457 | INFO     | [monitor] control thread has ended
[2025-11-26 03:23:55] 2025-11-26 08:23:52,497 | INFO     | all workflow threads have been joined
[2025-11-26 03:23:55] 2025-11-26 08:23:52,497 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:23:55] 2025-11-26 08:23:52,498 | INFO     | traces error code: 0
[2025-11-26 03:23:55] 2025-11-26 08:23:52,498 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:23:55] 2025-11-26 08:23:53,714 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:23:55] 2025-11-26 08:23:53,736 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:23:55] 2025-11-26 08:23:53,813 [wrapper] pilotpid: 601191
[2025-11-26 03:23:55] 2025-11-26 08:23:53,831 [wrapper] Pilot exit status: 0
[2025-11-26 03:23:55] 2025-11-26 08:23:53,918 [wrapper] pandaids: 6895558274
[2025-11-26 03:23:55] 2025-11-26 08:23:54,348 [wrapper] cleanup supervisor_pilot   32806 601192
[2025-11-26 03:23:55] 2025-11-26 08:23:54,376 [wrapper] Test setup, not cleaning
[2025-11-26 03:23:55] 2025-11-26 08:23:54,419 [wrapper] apfmon messages muted
[2025-11-26 03:23:55] 2025-11-26 08:23:54,432 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:23:55] 2025-11-26 08:23:54,475 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:23:55]  *** Error codes and diagnostics ***
[2025-11-26 03:23:55]     "exeErrorCode": 0,
[2025-11-26 03:23:55]     "exeErrorDiag": "",
[2025-11-26 03:23:55]     "pilotErrorCode": 0,
[2025-11-26 03:23:55]     "pilotErrorDiag": "",
[2025-11-26 03:23:55]  *** Listing of results directory ***
[2025-11-26 03:23:55] total 1314980
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 04:01 pilot3.tar.gz
[2025-11-26 03:23:55] -rwx------. 1 boincer umatlas     36292 Nov 24 04:47 runpilot2-wrapper.sh
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 04:47 queuedata.json
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas       100 Nov 25 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:23:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 13:56 run_atlas
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas       105 Nov 25 13:56 job.xml
[2025-11-26 03:23:55] -rw-r--r--. 2 boincer umatlas 410743187 Nov 25 13:56 EVNT.47483658._001299.pool.root.1
[2025-11-26 03:23:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:56 start_atlas.sh
[2025-11-26 03:23:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 13:56 shared
[2025-11-26 03:23:55] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 13:56 input.tar.gz
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas         0 Nov 25 13:56 boinc_lockfile
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 13:56 pandaJob.out
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas        57 Nov 25 13:56 setup.sh.local
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas    991543 Nov 25 13:57 agis_schedconf.cvmfs.json
[2025-11-26 03:23:55] drwx------. 5 boincer umatlas      4096 Nov 25 13:57 pilot3
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas       533 Nov 26 02:54 boinc_task_state.xml
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas 916959252 Nov 26 03:21 HITS.47556149._002858.pool.root.1
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas      6881 Nov 26 03:21 init_data.xml
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas      1059 Nov 26 03:21 memory_monitor_summary.json
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas   1516240 Nov 26 03:22 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas   1941636 Nov 26 03:22 log.47556149._002858.job.log.tgz.1
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas      8626 Nov 26 03:22 heartbeat.json
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas        95 Nov 26 03:23 pilot_heartbeat.json
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas      4823 Nov 26 03:23 pilotlog.txt
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas   5512372 Nov 26 03:23 log.47556149._002858.job.log.1
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 03:23 boinc_mmap_file
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas       353 Nov 26 03:23 output.list
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas       620 Nov 26 03:23 runtime_log
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas   7475200 Nov 26 03:23 result.tar.gz
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas       662 Nov 26 03:23 SksNDmlLih8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3aLKDmyik0un.diag
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 03:23 runtime_log.err
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas        29 Nov 26 03:23 wrapper_checkpoint.txt
[2025-11-26 03:23:55] -rw-r--r--. 1 boincer umatlas     21800 Nov 26 03:23 stderr.txt
[2025-11-26 03:23:55] HITS file was successfully produced:
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas 916959252 Nov 26 03:21 shared/HITS.pool.root.1
[2025-11-26 03:23:55]  *** Contents of shared directory: ***
[2025-11-26 03:23:55] total 1304496
[2025-11-26 03:23:55] -rw-r--r--. 2 boincer umatlas 410743187 Nov 25 13:56 ATLAS.root_0
[2025-11-26 03:23:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:56 start_atlas.sh
[2025-11-26 03:23:55] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 13:56 input.tar.gz
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas 916959252 Nov 26 03:21 HITS.pool.root.1
[2025-11-26 03:23:55] -rw-------. 1 boincer umatlas   7475200 Nov 26 03:23 result.tar.gz
03:23:57 (597278): run_atlas exited; CPU time 263267.740407
03:23:57 (597278): called boinc_finish(0)

</stderr_txt>
]]>

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