Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:57 (3311507): wrapper (7.7.26015): starting
00:02:57 (3311507): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:57] Arguments: --nthreads 9
[2025-11-26 00:02:57] Threads: 9
[2025-11-26 00:02:57] Checking for CVMFS
[2025-11-26 00:02:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:59] 2.13.3.0 12468 29608 354544 153309 3 390 27003545 32947200 31015 16776704 0 115404962 99.430 166219539 34183 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:02:59] CVMFS is ok
[2025-11-26 00:02:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:59] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:59] Checking for apptainer binary...
[2025-11-26 00:02:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:59] Running /usr/bin/apptainer --version
[2025-11-26 00:02:59] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:00] c6-6-8-1.aglt2.org
[2025-11-26 00:03:00] apptainer works
[2025-11-26 00:03:00] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:00] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:00] Starting ATLAS job with PandaID=6896242949
[2025-11-26 00:03:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:37:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:37:11] 2025-11-27 05:19:48,758 | INFO     | monitor loop #4779: job 0:6896242949 is in state 'finished'
[2025-11-27 00:37:11] 2025-11-27 05:19:48,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:11] 2025-11-27 05:19:48,849 | INFO     | time since job start (87329s) is within the limit (172800.0s)
[2025-11-27 00:37:11] 2025-11-27 05:19:50,856 | INFO     | time since job start (87331s) is within the limit (172800.0s)
[2025-11-27 00:37:11] 2025-11-27 05:19:51,263 | INFO     | monitor loop #4780: job 0:6896242949 is in state 'finished'
[2025-11-27 00:37:11] 2025-11-27 05:19:51,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:11] 2025-11-27 05:19:52,866 | INFO     | time since job start (87333s) is within the limit (172800.0s)
[2025-11-27 00:37:11] 2025-11-27 05:19:53,767 | INFO     | monitor loop #4781: job 0:6896242949 is in state 'finished'
[2025-11-27 00:37:11] 2025-11-27 05:19:53,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:11] 2025-11-27 05:19:54,875 | INFO     | time since job start (87335s) is within the limit (172800.0s)
[2025-11-27 00:37:11] 2025-11-27 05:19:56,274 | INFO     | monitor loop #4782: job 0:6896242949 is in state 'finished'
[2025-11-27 00:37:11] 2025-11-27 05:19:56,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:11] 2025-11-27 05:19:56,884 | INFO     | time since job start (87337s) is within the limit (172800.0s)
[2025-11-27 00:37:11] 2025-11-27 05:19:57,855 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:37:11] 2025-11-27 05:19:57,886 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2674.6583229166667
[2025-11-27 00:37:11] 2025-11-27 05:19:57,936 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896242949/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:37:11] 2025-11-27 05:19:57,941 | INFO     | extracted standard info from prmon json
[2025-11-27 00:37:11] 2025-11-27 05:19:57,942 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:37:11] 2025-11-27 05:19:57,942 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:37:11] 2025-11-27 05:19:57,974 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:37:11] 2025-11-27 05:19:57,976 | INFO     | sum of square deviations: 904827873768.246
[2025-11-27 00:37:11] 2025-11-27 05:19:58,215 | INFO     | sum of deviations: 4953313041890.897
[2025-11-27 00:37:11] 2025-11-27 05:19:58,215 | INFO     | mean x: 1764177183.0944717
[2025-11-27 00:37:11] 2025-11-27 05:19:58,215 | INFO     | mean y: 2999482.2526242128
[2025-11-27 00:37:11] 2025-11-27 05:19:58,215 | INFO     | intersect: -9654662601.957653
[2025-11-27 00:37:11] 2025-11-27 05:19:58,217 | INFO     | chi2: 20.560461297949125
[2025-11-27 00:37:11] 2025-11-27 05:19:58,240 | INFO     | sum of square deviations: 895364375200.2006
[2025-11-27 00:37:11] 2025-11-27 05:19:58,445 | INFO     | sum of deviations: 5468778308309.33
[2025-11-27 00:37:11] 2025-11-27 05:19:58,445 | INFO     | mean x: 1764177030.6053371
[2025-11-27 00:37:11] 2025-11-27 05:19:58,446 | INFO     | mean y: 3007787.1411516853
[2025-11-27 00:37:11] 2025-11-27 05:19:58,446 | INFO     | intersect: -10772374106.777508
[2025-11-27 00:37:11] 2025-11-27 05:19:58,448 | INFO     | chi2: 17.079524471190414
[2025-11-27 00:37:11] 2025-11-27 05:19:58,448 | INFO     | current chi2=17.079524471190414 (change=16.930246730922953 %)
[2025-11-27 00:37:11] 2025-11-27 05:19:58,448 | INFO     | right removable region: 1423
[2025-11-27 00:37:11] 2025-11-27 05:19:58,471 | INFO     | sum of square deviations: 895361764832.4105
[2025-11-27 00:37:11] 2025-11-27 05:19:58,790 | INFO     | sum of deviations: 4363766275460.743
[2025-11-27 00:37:11] 2025-11-27 05:19:58,791 | INFO     | mean x: 1764177335.6046348
[2025-11-27 00:37:11] 2025-11-27 05:19:58,791 | INFO     | mean y: 3008978.5856741574
[2025-11-27 00:37:11] 2025-11-27 05:19:58,791 | INFO     | intersect: -8595144151.713177
[2025-11-27 00:37:11] 2025-11-27 05:19:58,793 | INFO     | chi2: 16.564624156617946
[2025-11-27 00:37:11] 2025-11-27 05:19:58,793 | INFO     | current chi2=16.564624156617946 (change=19.43456950418597 %)
[2025-11-27 00:37:11] 2025-11-27 05:19:58,793 | INFO     | left removable region: 10
[2025-11-27 00:37:11] 2025-11-27 05:19:58,803 | INFO     | sum of square deviations: 874772186028.5577
[2025-11-27 00:37:11] 2025-11-27 05:19:58,885 | INFO     | monitor loop #4783: job 0:6896242949 is in state 'finished'
[2025-11-27 00:37:11] 2025-11-27 05:19:58,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:11] 2025-11-27 05:19:58,954 | INFO     | sum of deviations: 4516617960176.183
[2025-11-27 00:37:11] 2025-11-27 05:19:58,955 | INFO     | mean x: 1764177305.128804
[2025-11-27 00:37:11] 2025-11-27 05:19:58,955 | INFO     | mean y: 3026502.526539278
[2025-11-27 00:37:11] 2025-11-27 05:19:58,955 | INFO     | intersect: -9105762080.995993
[2025-11-27 00:37:11] 2025-11-27 05:19:58,957 | INFO     | chi2: 10.081403513800865
[2025-11-27 00:37:11] 2025-11-27 05:19:58,957 | INFO     | current memory leak: 5.16 B/s (using 1413 data points, chi2=10.08)
[2025-11-27 00:37:11] 2025-11-27 05:19:58,958 | INFO     | could have reported an average CPU frequency of 2628 MHz (51 samples)
[2025-11-27 00:37:11] 2025-11-27 05:19:58,958 | INFO     | ..............................
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | . Timing measurements:
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | . get job = 0 s
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | . initial setup = 8 s
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | . payload setup = 53 s
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | . stage-in = 0 s
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | . payload execution = 87164 s
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | . stage-out = 5 s
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | . log creation = 1 s
[2025-11-27 00:37:11] 2025-11-27 05:19:58,959 | INFO     | ..............................
[2025-11-27 00:37:11] 2025-11-27 05:19:59,155 | INFO     | 
[2025-11-27 00:37:11] 2025-11-27 05:19:59,155 | INFO     | job summary report
[2025-11-27 00:37:11] 2025-11-27 05:19:59,155 | INFO     | --------------------------------------------------
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | PanDA job id: 6896242949
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | task id: 47556173
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | errors: (none)
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | pilot state: finished 
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | transexitcode: 0
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | exeerrorcode: 0
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | exeerrordiag: 
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | exitcode: 0
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | exitmsg: OK
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | cpuconsumptiontime: 269901 s
[2025-11-27 00:37:11] 2025-11-27 05:19:59,156 | INFO     | nevents: 1000
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | neventsw: 0
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | pid: 3355963
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | pgrp: 3355963
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | corecount: 9
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | event service: False
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | sizes: {0: 2284141, 1: 2284340, 12: 2284340, 23: 2284368, 34: 2284396, 36: 2284686, 46: 2284842, 87221: 2348724, 87222: 2348723, 87228: 2357773, 87230: 2357829, 87
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | --------------------------------------------------
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | 
[2025-11-27 00:37:11] 2025-11-27 05:19:59,157 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 00:37:11] 2025-11-27 05:19:59,288 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,289 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:37:11] 2025-11-27 05:19:59,290 | INFO     | job 6896242949 has completed (purged errors)
[2025-11-27 00:37:11] 2025-11-27 05:19:59,291 | INFO     | overall cleanup function is called
[2025-11-27 00:37:11] 2025-11-27 05:19:59,709 | INFO     | PID=3319783 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:37:11] 2025-11-27 05:19:59,710 | INFO     | .. there are 42 such processes running
[2025-11-27 00:37:11] 2025-11-27 05:20:00,318 | INFO     | --- collectZombieJob: --- 10, [3355963]
[2025-11-27 00:37:11] 2025-11-27 05:20:00,318 | INFO     | zombie collector waiting for pid 3355963
[2025-11-27 00:37:11] 2025-11-27 05:20:00,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:37:11] 2025-11-27 05:20:00,319 | INFO     | collected zombie processes
[2025-11-27 00:37:11] 2025-11-27 05:20:00,319 | INFO     | will attempt to kill all subprocesses of pid=3355963
[2025-11-27 00:37:11] 2025-11-27 05:20:01,320 | INFO     | process IDs to be killed: [3355963] (in reverse order)
[2025-11-27 00:37:11] 2025-11-27 05:20:01,602 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:37:11] 2025-11-27 05:20:01,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:37:11] 2025-11-27 05:20:01,624 | INFO     | did not find any defunct processes belonging to 3355963
[2025-11-27 00:37:11] 2025-11-27 05:20:01,736 | INFO     | did not find any defunct processes belonging to 3355963
[2025-11-27 00:37:11] 2025-11-27 05:20:01,770 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:37:11] 2025-11-27 05:20:01,770 | INFO     | ready for new job
[2025-11-27 00:37:11] 2025-11-27 05:20:01,770 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:37:11] 2025-11-27 05:20:01,801 | INFO     | ***************************************
[2025-11-27 00:37:11] 2025-11-27 05:20:01,802 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:37:11] 2025-11-27 05:20:01,802 | INFO     | ***************************************
[2025-11-27 00:37:11] 2025-11-27 05:20:01,802 | INFO     | 
[2025-11-27 00:37:11] 2025-11-27 05:20:01,830 | INFO     | architecture information:
[2025-11-27 00:37:11] 2025-11-27 05:20:01,859 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:37:11] 2025-11-27 05:20:01,919 | INFO     | cat /etc/os-release:
[2025-11-27 00:37:11] NAME="CentOS Linux"
[2025-11-27 00:37:11] VERSION="7 (Core)"
[2025-11-27 00:37:11] ID="centos"
[2025-11-27 00:37:11] ID_LIKE="rhel fedora"
[2025-11-27 00:37:11] VERSION_ID="7"
[2025-11-27 00:37:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:37:11] ANSI_COLOR="0;31"
[2025-11-27 00:37:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:37:11] HOME_URL="https://www.centos.org/"
[2025-11-27 00:37:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:37:11] 
[2025-11-27 00:37:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:37:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:37:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:37:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:37:11] 
[2025-11-27 00:37:11] 2025-11-27 05:20:01,920 | INFO     | ***************************************
[2025-11-27 00:37:11] 2025-11-27 05:20:02,423 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 00:37:11] 2025-11-27 05:20:02,493 | INFO     | sufficient remaining disk space (61657317376 B)
[2025-11-27 00:37:11] 2025-11-27 05:20:02,493 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:37:11] 2025-11-27 05:20:02,493 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:37:11] 2025-11-27 05:20:02,493 | INFO     | update_server=False
[2025-11-27 00:37:11] 2025-11-27 05:20:02,493 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:37:11] 2025-11-27 05:20:02,494 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:37:11] 2025-11-27 05:20:02,494 | INFO     | aborting loop
[2025-11-27 00:37:11] 2025-11-27 05:20:02,676 | INFO     | all job control threads have been joined
[2025-11-27 00:37:11] 2025-11-27 05:20:02,778 | INFO     | all payload control threads have been joined
[2025-11-27 00:37:11] 2025-11-27 05:20:03,041 | INFO     | all data control threads have been joined
[2025-11-27 00:37:11] 2025-11-27 05:20:03,499 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:03,500 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:03,689 | INFO     | [job] control thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:03,729 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:37:11] 2025-11-27 05:20:03,785 | INFO     | [payload] control thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:03,786 | INFO     | [job] validate thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:03,786 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:04,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:37:11] 2025-11-27 05:20:04,047 | INFO     | [data] control thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:04,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:37:11] 2025-11-27 05:20:04,399 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:04,616 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:04,688 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:04,861 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:04,886 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:04,938 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:05,192 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:06,012 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:07,746 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:37:11] 2025-11-27 05:20:35,368 | INFO     | PID=3319783 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:37:11] 2025-11-27 05:20:35,369 | INFO     | .. there are 42 such processes running
[2025-11-27 00:37:11] 2025-11-27 05:20:35,369 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:37:11] 2025-11-27 05:20:35,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:37:11] 2025-11-27 05:20:35,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:37:11] 2025-11-27 05:21:00,076 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:37:11] 2025-11-27 05:21:01,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139830501562176)>', '<ExcThread(monitor, started 139830017115904)>']
[2025-11-27 00:37:11] 2025-11-27 05:21:02,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:37:11] 2025-11-27 05:21:02,667 | INFO     | [monitor] control thread has ended
[2025-11-27 00:37:11] 2025-11-27 05:21:06,884 | INFO     | all workflow threads have been joined
[2025-11-27 00:37:11] 2025-11-27 05:21:06,884 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:37:11] 2025-11-27 05:21:06,885 | INFO     | traces error code: 0
[2025-11-27 00:37:11] 2025-11-27 05:21:06,885 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:37:11] 2025-11-27 05:21:07,523 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:37:11] 2025-11-27 05:21:07,527 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:37:11] 2025-11-27 05:21:07,534 [wrapper] pilotpid: 3319783
[2025-11-27 00:37:11] 2025-11-27 05:21:07,540 [wrapper] Pilot exit status: 0
[2025-11-27 00:37:11] 2025-11-27 05:21:07,605 [wrapper] pandaids: 6896242949
[2025-11-27 00:37:11] 2025-11-27 05:21:08,009 [wrapper] cleanup supervisor_pilot  501492 3319784
[2025-11-27 00:37:11] 2025-11-27 05:21:08,017 [wrapper] Test setup, not cleaning
[2025-11-27 00:37:11] 2025-11-27 05:21:08,034 [wrapper] apfmon messages muted
[2025-11-27 00:37:11] 2025-11-27 05:21:08,078 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:37:11] 2025-11-27 05:21:08,095 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:37:11]  *** Error codes and diagnostics ***
[2025-11-27 00:37:11]     "exeErrorCode": 0,
[2025-11-27 00:37:11]     "exeErrorDiag": "",
[2025-11-27 00:37:11]     "pilotErrorCode": 0,
[2025-11-27 00:37:11]     "pilotErrorDiag": "",
[2025-11-27 00:37:11]  *** Listing of results directory ***
[2025-11-27 00:37:11] total 1322928
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 15:01 pilot3.tar.gz
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 15:46 queuedata.json
[2025-11-27 00:37:11] -rwx------ 1 boincer umatlas     36292 Nov 24 15:49 runpilot2-wrapper.sh
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:37:11] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-27 00:37:11] -rw-r--r-- 2 boincer umatlas 409986680 Nov 26 00:02 EVNT.47483658._003056.pool.root.1
[2025-11-27 00:37:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-27 00:37:11] drwxrwx--x 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-27 00:37:11] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 00:02 input.tar.gz
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas      2784 Nov 26 00:03 pandaJob.out
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 00:37:11] drwx------ 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas       533 Nov 26 23:51 boinc_task_state.xml
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas 914813883 Nov 27 00:18 HITS.47556173._000389.pool.root.1
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas      1058 Nov 27 00:19 memory_monitor_summary.json
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas   1516240 Nov 27 00:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas   2534292 Nov 27 00:19 log.47556173._000389.job.log.tgz.1
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas        95 Nov 27 00:19 pilot_heartbeat.json
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas      8620 Nov 27 00:19 heartbeat.json
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas      4824 Nov 27 00:21 pilotlog.txt
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas  10442679 Nov 27 00:21 log.47556173._000389.job.log.1
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas       353 Nov 27 00:21 output.list
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas       620 Nov 27 00:21 runtime_log
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas  12994560 Nov 27 00:21 result.tar.gz
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 00:21 runtime_log.err
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas       660 Nov 27 00:21 ijDLDm3fsh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6uLKDmpVUlzm.diag
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas      6878 Nov 27 00:31 init_data.xml
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 00:37 boinc_mmap_file
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas        29 Nov 27 00:37 wrapper_checkpoint.txt
[2025-11-27 00:37:11] -rw-r--r-- 1 boincer umatlas     21897 Nov 27 00:37 stderr.txt
[2025-11-27 00:37:11] HITS file was successfully produced:
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas 914813883 Nov 27 00:18 shared/HITS.pool.root.1
[2025-11-27 00:37:11]  *** Contents of shared directory: ***
[2025-11-27 00:37:11] total 1307052
[2025-11-27 00:37:11] -rw-r--r-- 2 boincer umatlas 409986680 Nov 26 00:02 ATLAS.root_0
[2025-11-27 00:37:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-27 00:37:11] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 00:02 input.tar.gz
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas 914813883 Nov 27 00:18 HITS.pool.root.1
[2025-11-27 00:37:11] -rw------- 1 boincer umatlas  12994560 Nov 27 00:21 result.tar.gz
00:37:13 (3311507): run_atlas exited; CPU time 273632.900422
00:37:13 (3311507): called boinc_finish(0)

</stderr_txt>
]]>

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