Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:57:27 (2046923): wrapper (7.7.26015): starting
13:57:27 (2046923): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:57:27] Arguments: --nthreads 8
[2025-11-25 13:57:27] Threads: 8
[2025-11-25 13:57:27] Checking for CVMFS
[2025-11-25 13:57:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:57:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:57:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:57:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:57:29] 2.13.2.0 1657905 29207 186924 153293 0 714 34671761 40960001 37498 16776704 0 360199619 99.696 271584761 47770 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 13:57:29] CVMFS is ok
[2025-11-25 13:57:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:57:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:57:29] Further information can be found at the LHC@home message board.
[2025-11-25 13:57:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:57:29] Checking for apptainer binary...
[2025-11-25 13:57:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:57:29] Running /usr/bin/apptainer --version
[2025-11-25 13:57:30] apptainer version 1.4.4-1.el9
[2025-11-25 13:57:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:57:30] c-208-39.aglt2.org
[2025-11-25 13:57:30] apptainer works
[2025-11-25 13:57:30] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:57:30] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:57:30] Starting ATLAS job with PandaID=6895401957
[2025-11-25 13:57:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:21:56]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:21:56] 2025-11-26 04:21:09,280 | INFO     | time since job start (33748s) is within the limit (172800.0s)
[2025-11-25 23:21:56] 2025-11-26 04:21:09,280 | INFO     | monitor loop #2037: job 0:6895401957 is in state 'finished'
[2025-11-25 23:21:56] 2025-11-26 04:21:09,280 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:21:56] 2025-11-26 04:21:11,787 | INFO     | monitor loop #2038: job 0:6895401957 is in state 'finished'
[2025-11-25 23:21:56] 2025-11-26 04:21:11,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:21:56] 2025-11-26 04:21:12,518 | INFO     | PID=2059940 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:21:56] 2025-11-26 04:21:12,518 | INFO     | .. there are 44 such processes running
[2025-11-25 23:21:56] 2025-11-26 04:21:13,519 | INFO     | time since job start (33752s) is within the limit (172800.0s)
[2025-11-25 23:21:56] 2025-11-26 04:21:14,293 | INFO     | monitor loop #2039: job 0:6895401957 is in state 'finished'
[2025-11-25 23:21:56] 2025-11-26 04:21:14,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:21:56] 2025-11-26 04:21:15,527 | INFO     | time since job start (33754s) is within the limit (172800.0s)
[2025-11-25 23:21:56] 2025-11-26 04:21:16,798 | INFO     | monitor loop #2040: job 0:6895401957 is in state 'finished'
[2025-11-25 23:21:56] 2025-11-26 04:21:16,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:21:56] 2025-11-26 04:21:17,534 | INFO     | time since job start (33756s) is within the limit (172800.0s)
[2025-11-25 23:21:56] 2025-11-26 04:21:19,303 | INFO     | monitor loop #2041: job 0:6895401957 is in state 'finished'
[2025-11-25 23:21:56] 2025-11-26 04:21:19,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:21:56] 2025-11-26 04:21:19,540 | INFO     | time since job start (33758s) is within the limit (172800.0s)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,275 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 23:21:56] 2025-11-26 04:21:20,288 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.251039062498
[2025-11-25 23:21:56] 2025-11-26 04:21:20,329 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895401957/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,329 | INFO     | extracted standard info from prmon json
[2025-11-25 23:21:56] 2025-11-26 04:21:20,329 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:21:56] 2025-11-26 04:21:20,329 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:21:56] 2025-11-26 04:21:20,343 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:21:56] 2025-11-26 04:21:20,343 | INFO     | sum of square deviations: 51864056996.23955
[2025-11-25 23:21:56] 2025-11-26 04:21:20,355 | INFO     | sum of deviations: 191074004104.52045
[2025-11-25 23:21:56] 2025-11-26 04:21:20,355 | INFO     | mean x: 1764114037.0707805
[2025-11-25 23:21:56] 2025-11-26 04:21:20,355 | INFO     | mean y: 2795698.8584392015
[2025-11-25 23:21:56] 2025-11-26 04:21:20,355 | INFO     | intersect: -6496432326.911787
[2025-11-25 23:21:56] 2025-11-26 04:21:20,356 | INFO     | chi2: 16.18526593536584
[2025-11-25 23:21:56] 2025-11-26 04:21:20,356 | INFO     | sum of square deviations: 50465057812.102936
[2025-11-25 23:21:56] 2025-11-26 04:21:20,368 | INFO     | sum of deviations: 371203895375.051
[2025-11-25 23:21:56] 2025-11-26 04:21:20,368 | INFO     | mean x: 1764113884.5897436
[2025-11-25 23:21:56] 2025-11-26 04:21:20,368 | INFO     | mean y: 2815326.8663003664
[2025-11-25 23:21:56] 2025-11-26 04:21:20,368 | INFO     | intersect: -12973409693.683971
[2025-11-25 23:21:56] 2025-11-26 04:21:20,369 | INFO     | chi2: 12.739319693557507
[2025-11-25 23:21:56] 2025-11-26 04:21:20,369 | INFO     | current chi2=12.739319693557507 (change=21.290637148437096 %)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,369 | INFO     | right removable region: 545
[2025-11-25 23:21:56] 2025-11-26 04:21:20,369 | INFO     | sum of square deviations: 50464361802.10292
[2025-11-25 23:21:56] 2025-11-26 04:21:20,381 | INFO     | sum of deviations: -20073311646.33305
[2025-11-25 23:21:56] 2025-11-26 04:21:20,381 | INFO     | mean x: 1764114189.5897436
[2025-11-25 23:21:56] 2025-11-26 04:21:20,381 | INFO     | mean y: 2818697.261904762
[2025-11-25 23:21:56] 2025-11-26 04:21:20,381 | INFO     | intersect: 704533979.9443766
[2025-11-25 23:21:56] 2025-11-26 04:21:20,390 | INFO     | chi2: 12.250689399256201
[2025-11-25 23:21:56] 2025-11-26 04:21:20,390 | INFO     | current chi2=12.250689399256201 (change=24.30961932798607 %)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,390 | INFO     | left removable region: 10
[2025-11-25 23:21:56] 2025-11-26 04:21:20,390 | INFO     | sum of square deviations: 47475064602.60925
[2025-11-25 23:21:56] 2025-11-26 04:21:20,400 | INFO     | sum of deviations: 115973219728.02292
[2025-11-25 23:21:56] 2025-11-26 04:21:20,405 | INFO     | mean x: 1764114159.1252337
[2025-11-25 23:21:56] 2025-11-26 04:21:20,405 | INFO     | mean y: 2852981.8205607478
[2025-11-25 23:21:56] 2025-11-26 04:21:20,405 | INFO     | intersect: -4306567146.705241
[2025-11-25 23:21:56] 2025-11-26 04:21:20,405 | INFO     | chi2: 6.997783648741778
[2025-11-25 23:21:56] 2025-11-26 04:21:20,405 | INFO     | current memory leak: 2.44 B/s (using 535 data points, chi2=7.00)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | could have reported an average CPU frequency of 3780 MHz (22 samples)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | ..............................
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | . Timing measurements:
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | . get job = 0 s
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | . initial setup = 4 s
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | . payload setup = 44 s
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | . stage-in = 0 s
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | . payload execution = 33607 s
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | . stage-out = 8 s
[2025-11-25 23:21:56] 2025-11-26 04:21:20,406 | INFO     | . log creation = 1 s
[2025-11-25 23:21:56] 2025-11-26 04:21:20,407 | INFO     | ..............................
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | 
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | job summary report
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | --------------------------------------------------
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | PanDA job id: 6895401957
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | task id: 47556149
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | errors: (none)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | pilot state: finished 
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | transexitcode: 0
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | exeerrorcode: 0
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | exeerrordiag: 
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | exitcode: 0
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | exitmsg: OK
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | cpuconsumptiontime: 141139 s
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | nevents: 1000
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | neventsw: 0
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | pid: 2078977
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | pgrp: 2078977
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | corecount: 8
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | event service: False
[2025-11-25 23:21:56] 2025-11-26 04:21:20,769 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284370, 30: 2284660, 33: 2284688, 33656: 2325448, 33657: 2325447, 33665: 2334497, 33666: 2334553, 33696: 2334799}
[2025-11-25 23:21:56] 2025-11-26 04:21:20,770 | INFO     | --------------------------------------------------
[2025-11-25 23:21:56] 2025-11-26 04:21:20,770 | INFO     | 
[2025-11-25 23:21:56] 2025-11-26 04:21:20,770 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 23:21:56] 2025-11-26 04:21:20,835 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,835 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:21:56] 2025-11-26 04:21:20,837 | INFO     | job 6895401957 has completed (purged errors)
[2025-11-25 23:21:56] 2025-11-26 04:21:20,837 | INFO     | overall cleanup function is called
[2025-11-25 23:21:56] 2025-11-26 04:21:21,887 | INFO     | --- collectZombieJob: --- 10, [2078977]
[2025-11-25 23:21:56] 2025-11-26 04:21:21,887 | INFO     | zombie collector waiting for pid 2078977
[2025-11-25 23:21:56] 2025-11-26 04:21:21,887 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:21:56] 2025-11-26 04:21:21,887 | INFO     | collected zombie processes
[2025-11-25 23:21:56] 2025-11-26 04:21:21,887 | INFO     | will attempt to kill all subprocesses of pid=2078977
[2025-11-25 23:21:56] 2025-11-26 04:21:24,048 | INFO     | process IDs to be killed: [2078977] (in reverse order)
[2025-11-25 23:21:56] 2025-11-26 04:21:24,557 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:21:56] 2025-11-26 04:21:24,558 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:21:56] 2025-11-26 04:21:24,679 | INFO     | did not find any defunct processes belonging to 2078977
[2025-11-25 23:21:56] 2025-11-26 04:21:24,818 | INFO     | did not find any defunct processes belonging to 2078977
[2025-11-25 23:21:56] 2025-11-26 04:21:24,851 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:21:56] 2025-11-26 04:21:24,851 | INFO     | ready for new job
[2025-11-25 23:21:56] 2025-11-26 04:21:24,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:21:56] 2025-11-26 04:21:24,853 | INFO     | ***************************************
[2025-11-25 23:21:56] 2025-11-26 04:21:24,870 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:21:56] 2025-11-26 04:21:24,870 | INFO     | ***************************************
[2025-11-25 23:21:56] 2025-11-26 04:21:24,870 | INFO     | 
[2025-11-25 23:21:56] 2025-11-26 04:21:24,896 | INFO     | architecture information:
[2025-11-25 23:21:56] 2025-11-26 04:21:24,897 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:21:56] 2025-11-26 04:21:25,135 | INFO     | cat /etc/os-release:
[2025-11-25 23:21:56] NAME="CentOS Linux"
[2025-11-25 23:21:56] VERSION="7 (Core)"
[2025-11-25 23:21:56] ID="centos"
[2025-11-25 23:21:56] ID_LIKE="rhel fedora"
[2025-11-25 23:21:56] VERSION_ID="7"
[2025-11-25 23:21:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:21:56] ANSI_COLOR="0;31"
[2025-11-25 23:21:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:21:56] HOME_URL="https://www.centos.org/"
[2025-11-25 23:21:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:21:56] 
[2025-11-25 23:21:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:21:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:21:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:21:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:21:56] 
[2025-11-25 23:21:56] 2025-11-26 04:21:25,135 | INFO     | ***************************************
[2025-11-25 23:21:56] 2025-11-26 04:21:25,639 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 23:21:56] 2025-11-26 04:21:25,721 | INFO     | sufficient remaining disk space (163241263104 B)
[2025-11-25 23:21:56] 2025-11-26 04:21:25,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:21:56] 2025-11-26 04:21:25,721 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:21:56] 2025-11-26 04:21:25,721 | INFO     | update_server=False
[2025-11-25 23:21:56] 2025-11-26 04:21:25,721 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:21:56] 2025-11-26 04:21:25,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:21:56] 2025-11-26 04:21:25,722 | INFO     | aborting loop
[2025-11-25 23:21:56] 2025-11-26 04:21:25,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:21:56] 2025-11-26 04:21:25,978 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:21:56] 2025-11-26 04:21:26,221 | INFO     | all payload control threads have been joined
[2025-11-25 23:21:56] 2025-11-26 04:21:26,298 | INFO     | all data control threads have been joined
[2025-11-25 23:21:56] 2025-11-26 04:21:26,326 | INFO     | all job control threads have been joined
[2025-11-25 23:21:56] 2025-11-26 04:21:26,728 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:26,728 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:26,741 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:26,946 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:27,227 | INFO     | [payload] control thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:27,266 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:27,304 | INFO     | [data] control thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:27,332 | INFO     | [job] control thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:27,410 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:27,985 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:28,015 | INFO     | [job] validate thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:28,015 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:28,015 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:28,051 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:28,224 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:28,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:21:56] 2025-11-26 04:21:32,288 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:21:56] 2025-11-26 04:21:42,793 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:21:56] 2025-11-26 04:21:44,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140706524952384)>', '<ExcThread(monitor, started 140705812969216)>']
[2025-11-25 23:21:56] 2025-11-26 04:21:49,932 | INFO     | all workflow threads have been joined
[2025-11-25 23:21:56] 2025-11-26 04:21:49,932 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:21:56] 2025-11-26 04:21:49,932 | INFO     | traces error code: 0
[2025-11-25 23:21:56] 2025-11-26 04:21:49,932 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:21:56] 2025-11-26 04:21:54,433 | INFO     | PID=2059940 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:21:56] 2025-11-26 04:21:54,434 | INFO     | .. there are 44 such processes running
[2025-11-25 23:21:56] 2025-11-26 04:21:54,434 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:21:56] 2025-11-26 04:21:54,434 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:21:56] 2025-11-26 04:21:54,434 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:21:56] 2025-11-26 04:21:54,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:21:56] 2025-11-26 04:21:54,434 | INFO     | [monitor] control thread has ended
[2025-11-25 23:21:56] 2025-11-26 04:21:55,265 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:21:56] 2025-11-26 04:21:55,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:21:56] 2025-11-26 04:21:55,309 [wrapper] pilotpid: 2059940
[2025-11-25 23:21:56] 2025-11-26 04:21:55,365 [wrapper] Pilot exit status: 0
[2025-11-25 23:21:56] 2025-11-26 04:21:55,610 [wrapper] pandaids: 6895401957
[2025-11-25 23:21:56] 2025-11-26 04:21:55,985 [wrapper] cleanup supervisor_pilot 1820083 2059941
[2025-11-25 23:21:56] 2025-11-26 04:21:55,996 [wrapper] Test setup, not cleaning
[2025-11-25 23:21:56] 2025-11-26 04:21:56,021 [wrapper] apfmon messages muted
[2025-11-25 23:21:56] 2025-11-26 04:21:56,039 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:21:56] 2025-11-26 04:21:56,049 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:21:56]  *** Error codes and diagnostics ***
[2025-11-25 23:21:56]     "exeErrorCode": 0,
[2025-11-25 23:21:56]     "exeErrorDiag": "",
[2025-11-25 23:21:56]     "pilotErrorCode": 0,
[2025-11-25 23:21:56]     "pilotErrorDiag": "",
[2025-11-25 23:21:56]  *** Listing of results directory ***
[2025-11-25 23:21:56] total 1322604
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 02:53 pilot3.tar.gz
[2025-11-25 23:21:56] -rwx------. 1 boincer umatlas     36292 Nov 24 03:01 runpilot2-wrapper.sh
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 03:01 queuedata.json
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas       100 Nov 25 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:21:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 13:57 run_atlas
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas       105 Nov 25 13:57 job.xml
[2025-11-25 23:21:56] -rw-r--r--. 2 boincer umatlas 411431891 Nov 25 13:57 EVNT.47483658._001266.pool.root.1
[2025-11-25 23:21:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:57 start_atlas.sh
[2025-11-25 23:21:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 13:57 shared
[2025-11-25 23:21:56] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 13:57 input.tar.gz
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas         0 Nov 25 13:57 boinc_lockfile
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 13:57 pandaJob.out
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas        57 Nov 25 13:57 setup.sh.local
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas    991543 Nov 25 13:58 agis_schedconf.cvmfs.json
[2025-11-25 23:21:56] drwx------. 5 boincer umatlas      4096 Nov 25 13:58 pilot3
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas       533 Nov 25 23:00 boinc_task_state.xml
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas 926808274 Nov 25 23:20 HITS.47556149._002530.pool.root.1
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas      1078 Nov 25 23:20 memory_monitor_summary.json
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas   1516240 Nov 25 23:20 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas   1804650 Nov 25 23:20 log.47556149._002530.job.log.tgz.1
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas        95 Nov 25 23:21 pilot_heartbeat.json
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas      8650 Nov 25 23:21 heartbeat.json
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas      7176 Nov 25 23:21 init_data.xml
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 23:21 boinc_mmap_file
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas        29 Nov 25 23:21 wrapper_checkpoint.txt
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas       823 Nov 25 23:21 pilotlog.txt
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas   4286765 Nov 25 23:21 log.47556149._002530.job.log.1
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas       353 Nov 25 23:21 output.list
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas       620 Nov 25 23:21 runtime_log
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas   6113280 Nov 25 23:21 result.tar.gz
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 23:21 runtime_log.err
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas       666 Nov 25 23:21 qtdKDmIhgh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4xIKDmDBtrFo.diag
[2025-11-25 23:21:56] -rw-r--r--. 1 boincer umatlas     21899 Nov 25 23:21 stderr.txt
[2025-11-25 23:21:56] HITS file was successfully produced:
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas 926808274 Nov 25 23:20 shared/HITS.pool.root.1
[2025-11-25 23:21:56]  *** Contents of shared directory: ***
[2025-11-25 23:21:56] total 1313456
[2025-11-25 23:21:56] -rw-r--r--. 2 boincer umatlas 411431891 Nov 25 13:57 ATLAS.root_0
[2025-11-25 23:21:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:57 start_atlas.sh
[2025-11-25 23:21:56] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 13:57 input.tar.gz
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas 926808274 Nov 25 23:20 HITS.pool.root.1
[2025-11-25 23:21:56] -rw-------. 1 boincer umatlas   6113280 Nov 25 23:21 result.tar.gz
23:21:58 (2046923): run_atlas exited; CPU time 141427.667093
23:21:58 (2046923): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN