Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:00:18 (3104777): wrapper (7.7.26015): starting
14:00:18 (3104777): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 14:00:18] Arguments: --nthreads 8
[2025-11-25 14:00:18] Threads: 8
[2025-11-25 14:00:18] Checking for CVMFS
[2025-11-25 14:00:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:00:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:00:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:00:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:00:21] 2.13.3.0 5308 7387 225628 153293 2 446 31199303 32935936 22594 16776704 0 19520314 99.386 35070404 40263 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 14:00:21] CVMFS is ok
[2025-11-25 14:00:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:00:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:00:21] Further information can be found at the LHC@home message board.
[2025-11-25 14:00:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:00:21] Checking for apptainer binary...
[2025-11-25 14:00:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:00:21] Running /usr/bin/apptainer --version
[2025-11-25 14:00:21] apptainer version 1.4.4-1.el9
[2025-11-25 14:00:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:00:21] c6-1-24-1.aglt2.org
[2025-11-25 14:00:21] apptainer works
[2025-11-25 14:00:21] Set ATHENA_PROC_NUMBER=8
[2025-11-25 14:00:21] Set ATHENA_CORE_NUMBER=8
[2025-11-25 14:00:21] Starting ATLAS job with PandaID=6895417913
[2025-11-25 14:00:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:36:40]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:36:40] 2025-11-26 13:35:24,080 | INFO     | job 6895417913 has finished - writing final server update
[2025-11-26 08:36:40] 2025-11-26 13:35:24,081 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 08:36:40] 2025-11-26 13:35:24,107 | INFO     | executing command: lscpu
[2025-11-26 08:36:40] 2025-11-26 13:35:24,202 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 08:36:40] 2025-11-26 13:35:24,561 | INFO     | time since job start (66843s) is within the limit (172800.0s)
[2025-11-26 08:36:40] 2025-11-26 13:35:25,594 | INFO     | monitor loop #3568: job 0:6895417913 is in state 'finished'
[2025-11-26 08:36:40] 2025-11-26 13:35:25,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:36:40] 2025-11-26 13:35:26,571 | INFO     | time since job start (66845s) is within the limit (172800.0s)
[2025-11-26 08:36:40] 2025-11-26 13:35:28,104 | INFO     | monitor loop #3569: job 0:6895417913 is in state 'finished'
[2025-11-26 08:36:40] 2025-11-26 13:35:28,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:36:40] 2025-11-26 13:35:28,578 | INFO     | time since job start (66847s) is within the limit (172800.0s)
[2025-11-26 08:36:40] 2025-11-26 13:35:30,586 | INFO     | time since job start (66849s) is within the limit (172800.0s)
[2025-11-26 08:36:40] 2025-11-26 13:35:30,610 | INFO     | monitor loop #3570: job 0:6895417913 is in state 'finished'
[2025-11-26 08:36:40] 2025-11-26 13:35:30,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:36:40] 2025-11-26 13:35:31,792 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:36:40] 2025-11-26 13:35:31,796 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2795.3122500000004
[2025-11-26 08:36:40] 2025-11-26 13:35:31,808 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895417913/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:36:40] 2025-11-26 13:35:31,809 | INFO     | extracted standard info from prmon json
[2025-11-26 08:36:40] 2025-11-26 13:35:31,810 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:36:40] 2025-11-26 13:35:31,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:36:40] 2025-11-26 13:35:31,835 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:36:40] 2025-11-26 13:35:31,837 | INFO     | sum of square deviations: 405987152511.36383
[2025-11-26 08:36:40] 2025-11-26 13:35:31,873 | INFO     | sum of deviations: 3626797836357.05
[2025-11-26 08:36:40] 2025-11-26 13:35:31,874 | INFO     | mean x: 1764130750.2468007
[2025-11-26 08:36:40] 2025-11-26 13:35:31,874 | INFO     | mean y: 2872927.2294332725
[2025-11-26 08:36:40] 2025-11-26 13:35:31,874 | INFO     | intersect: -15756605047.549454
[2025-11-26 08:36:40] 2025-11-26 13:35:31,880 | INFO     | chi2: 19.46609093004279
[2025-11-26 08:36:40] 2025-11-26 13:35:31,882 | INFO     | sum of square deviations: 400446357033.53735
[2025-11-26 08:36:40] 2025-11-26 13:35:31,945 | INFO     | sum of deviations: 3999555922463.542
[2025-11-26 08:36:40] 2025-11-26 13:35:31,946 | INFO     | mean x: 1764130597.7548208
[2025-11-26 08:36:40] 2025-11-26 13:35:31,946 | INFO     | mean y: 2883183.0394857666
[2025-11-26 08:36:40] 2025-11-26 13:35:31,946 | INFO     | intersect: -17616802590.89933
[2025-11-26 08:36:40] 2025-11-26 13:35:31,952 | INFO     | chi2: 16.132347013019785
[2025-11-26 08:36:40] 2025-11-26 13:35:31,953 | INFO     | current chi2=16.132347013019785 (change=17.12590334137351 %)
[2025-11-26 08:36:40] 2025-11-26 13:35:31,953 | INFO     | right removable region: 1088
[2025-11-26 08:36:40] 2025-11-26 13:35:31,954 | INFO     | sum of square deviations: 400445191323.53735
[2025-11-26 08:36:40] 2025-11-26 13:35:32,025 | INFO     | sum of deviations: 3177930819585.0186
[2025-11-26 08:36:40] 2025-11-26 13:35:32,025 | INFO     | mean x: 1764130902.7548208
[2025-11-26 08:36:40] 2025-11-26 13:35:32,025 | INFO     | mean y: 2885277.7116620755
[2025-11-26 08:36:40] 2025-11-26 13:35:32,026 | INFO     | intersect: -13997247791.978067
[2025-11-26 08:36:40] 2025-11-26 13:35:32,027 | INFO     | chi2: 15.02244769920138
[2025-11-26 08:36:40] 2025-11-26 13:35:32,027 | INFO     | current chi2=15.02244769920138 (change=22.82760954323582 %)
[2025-11-26 08:36:40] 2025-11-26 13:35:32,027 | INFO     | left removable region: 10
[2025-11-26 08:36:40] 2025-11-26 13:35:32,028 | INFO     | sum of square deviations: 388432243549.81854
[2025-11-26 08:36:40] 2025-11-26 13:35:32,067 | INFO     | sum of deviations: 3205449574240.638
[2025-11-26 08:36:40] 2025-11-26 13:35:32,068 | INFO     | mean x: 1764130872.2727273
[2025-11-26 08:36:40] 2025-11-26 13:35:32,068 | INFO     | mean y: 2909048.7189239333
[2025-11-26 08:36:40] 2025-11-26 13:35:32,068 | INFO     | intersect: -14555183507.534369
[2025-11-26 08:36:40] 2025-11-26 13:35:32,073 | INFO     | chi2: 7.470347618334306
[2025-11-26 08:36:40] 2025-11-26 13:35:32,074 | INFO     | current memory leak: 8.25 B/s (using 1078 data points, chi2=7.47)
[2025-11-26 08:36:40] 2025-11-26 13:35:32,075 | INFO     | could have reported an average CPU frequency of 2959 MHz (40 samples)
[2025-11-26 08:36:40] 2025-11-26 13:35:32,075 | INFO     | ..............................
[2025-11-26 08:36:40] 2025-11-26 13:35:32,075 | INFO     | . Timing measurements:
[2025-11-26 08:36:40] 2025-11-26 13:35:32,075 | INFO     | . get job = 0 s
[2025-11-26 08:36:40] 2025-11-26 13:35:32,075 | INFO     | . initial setup = 4 s
[2025-11-26 08:36:40] 2025-11-26 13:35:32,076 | INFO     | . payload setup = 43 s
[2025-11-26 08:36:40] 2025-11-26 13:35:32,076 | INFO     | . stage-in = 0 s
[2025-11-26 08:36:40] 2025-11-26 13:35:32,076 | INFO     | . payload execution = 66723 s
[2025-11-26 08:36:40] 2025-11-26 13:35:32,076 | INFO     | . stage-out = 7 s
[2025-11-26 08:36:40] 2025-11-26 13:35:32,076 | INFO     | . log creation = 2 s
[2025-11-26 08:36:40] 2025-11-26 13:35:32,076 | INFO     | ..............................
[2025-11-26 08:36:40] 2025-11-26 13:35:32,260 | INFO     | 
[2025-11-26 08:36:40] 2025-11-26 13:35:32,260 | INFO     | job summary report
[2025-11-26 08:36:40] 2025-11-26 13:35:32,260 | INFO     | --------------------------------------------------
[2025-11-26 08:36:40] 2025-11-26 13:35:32,260 | INFO     | PanDA job id: 6895417913
[2025-11-26 08:36:40] 2025-11-26 13:35:32,260 | INFO     | task id: 47556149
[2025-11-26 08:36:40] 2025-11-26 13:35:32,260 | INFO     | errors: (none)
[2025-11-26 08:36:40] 2025-11-26 13:35:32,260 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | pilot state: finished 
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | transexitcode: 0
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | exeerrorcode: 0
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | exeerrordiag: 
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | exitcode: 0
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | exitmsg: OK
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | cpuconsumptiontime: 245899 s
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | nevents: 1000
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | neventsw: 0
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | pid: 3132793
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | pgrp: 3132793
[2025-11-26 08:36:40] 2025-11-26 13:35:32,261 | INFO     | corecount: 8
[2025-11-26 08:36:40] 2025-11-26 13:35:32,262 | INFO     | event service: False
[2025-11-26 08:36:40] 2025-11-26 13:35:32,262 | INFO     | sizes: {0: 2284087, 1: 2284342, 12: 2284342, 23: 2284370, 29: 2284660, 34: 2284688, 66771: 2339642, 66781: 2348692, 66789: 2348882}
[2025-11-26 08:36:40] 2025-11-26 13:35:32,262 | INFO     | --------------------------------------------------
[2025-11-26 08:36:40] 2025-11-26 13:35:32,262 | INFO     | 
[2025-11-26 08:36:40] 2025-11-26 13:35:32,262 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 08:36:40] 2025-11-26 13:35:32,354 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,354 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,354 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,355 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:36:40] 2025-11-26 13:35:32,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:36:40] 2025-11-26 13:35:32,356 | INFO     | job 6895417913 has completed (purged errors)
[2025-11-26 08:36:40] 2025-11-26 13:35:32,378 | INFO     | overall cleanup function is called
[2025-11-26 08:36:40] 2025-11-26 13:35:33,404 | INFO     | --- collectZombieJob: --- 10, [3132793]
[2025-11-26 08:36:40] 2025-11-26 13:35:33,404 | INFO     | zombie collector waiting for pid 3132793
[2025-11-26 08:36:40] 2025-11-26 13:35:33,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:36:40] 2025-11-26 13:35:33,405 | INFO     | collected zombie processes
[2025-11-26 08:36:40] 2025-11-26 13:35:33,406 | INFO     | will attempt to kill all subprocesses of pid=3132793
[2025-11-26 08:36:40] 2025-11-26 13:35:34,661 | INFO     | process IDs to be killed: [3132793] (in reverse order)
[2025-11-26 08:36:40] 2025-11-26 13:35:34,834 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:36:40] 2025-11-26 13:35:34,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:36:40] 2025-11-26 13:35:34,857 | INFO     | did not find any defunct processes belonging to 3132793
[2025-11-26 08:36:40] 2025-11-26 13:35:34,876 | INFO     | did not find any defunct processes belonging to 3132793
[2025-11-26 08:36:40] 2025-11-26 13:35:34,888 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:36:40] 2025-11-26 13:35:34,888 | INFO     | ready for new job
[2025-11-26 08:36:40] 2025-11-26 13:35:34,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:36:40] 2025-11-26 13:35:34,922 | INFO     | ***************************************
[2025-11-26 08:36:40] 2025-11-26 13:35:34,922 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:36:40] 2025-11-26 13:35:34,922 | INFO     | ***************************************
[2025-11-26 08:36:40] 2025-11-26 13:35:34,922 | INFO     | 
[2025-11-26 08:36:40] 2025-11-26 13:35:34,960 | INFO     | architecture information:
[2025-11-26 08:36:40] 2025-11-26 13:35:34,968 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:36:40] 2025-11-26 13:35:35,065 | INFO     | cat /etc/os-release:
[2025-11-26 08:36:40] NAME="CentOS Linux"
[2025-11-26 08:36:40] VERSION="7 (Core)"
[2025-11-26 08:36:40] ID="centos"
[2025-11-26 08:36:40] ID_LIKE="rhel fedora"
[2025-11-26 08:36:40] VERSION_ID="7"
[2025-11-26 08:36:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:36:40] ANSI_COLOR="0;31"
[2025-11-26 08:36:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:36:40] HOME_URL="https://www.centos.org/"
[2025-11-26 08:36:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:36:40] 
[2025-11-26 08:36:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:36:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:36:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:36:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:36:40] 
[2025-11-26 08:36:40] 2025-11-26 13:35:35,066 | INFO     | ***************************************
[2025-11-26 08:36:40] 2025-11-26 13:35:35,569 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 08:36:40] 2025-11-26 13:35:35,593 | INFO     | sufficient remaining disk space (67507322880 B)
[2025-11-26 08:36:40] 2025-11-26 13:35:35,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:36:40] 2025-11-26 13:35:35,594 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:36:40] 2025-11-26 13:35:35,594 | INFO     | update_server=False
[2025-11-26 08:36:40] 2025-11-26 13:35:35,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:36:40] 2025-11-26 13:35:35,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:36:40] 2025-11-26 13:35:35,662 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 08:36:40] 2025-11-26 13:35:35,662 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 08:36:40] 2025-11-26 13:35:35,662 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:36:40] 2025-11-26 13:35:35,662 | INFO     | will abort loop
[2025-11-26 08:36:40] 2025-11-26 13:35:36,023 | INFO     | all payload control threads have been joined
[2025-11-26 08:36:40] 2025-11-26 13:35:36,297 | INFO     | all data control threads have been joined
[2025-11-26 08:36:40] 2025-11-26 13:35:36,600 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:36,668 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:36,680 | INFO     | [job] validate thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:36,681 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:36,712 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:36:40] 2025-11-26 13:35:36,732 | INFO     | all job control threads have been joined
[2025-11-26 08:36:40] 2025-11-26 13:35:37,029 | INFO     | [payload] control thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:37,121 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:37,127 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:37,161 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:37,161 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:37,287 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:36:40] 2025-11-26 13:35:37,303 | INFO     | [data] control thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:37,424 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:37,621 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:37,739 | INFO     | [job] control thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:38,293 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:38,721 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:35:39,610 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:36:40] 2025-11-26 13:36:02,623 | INFO     | 66856s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 08:36:40] 2025-11-26 13:36:04,158 | INFO     | PID=3114459 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:36:40] 2025-11-26 13:36:04,158 | INFO     | .. there are 33 such processes running
[2025-11-26 08:36:40] 2025-11-26 13:36:04,158 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:36:40] 2025-11-26 13:36:04,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:36:40] 2025-11-26 13:36:04,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:36:40] 2025-11-26 13:36:33,933 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:36:40] 2025-11-26 13:36:34,517 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704858916672)>', '<ExcThread(monitor, started 140704487544576)>']
[2025-11-26 08:36:40] 2025-11-26 13:36:35,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:36:40] 2025-11-26 13:36:35,389 | INFO     | [monitor] control thread has ended
[2025-11-26 08:36:40] 2025-11-26 13:36:39,543 | INFO     | all workflow threads have been joined
[2025-11-26 08:36:40] 2025-11-26 13:36:39,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:36:40] 2025-11-26 13:36:39,543 | INFO     | traces error code: 0
[2025-11-26 08:36:40] 2025-11-26 13:36:39,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:36:40] 2025-11-26 13:36:40,138 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:36:40] 2025-11-26 13:36:40,154 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:36:40] 2025-11-26 13:36:40,169 [wrapper] pilotpid: 3114459
[2025-11-26 08:36:40] 2025-11-26 13:36:40,220 [wrapper] Pilot exit status: 0
[2025-11-26 08:36:40] 2025-11-26 13:36:40,263 [wrapper] pandaids: 6895417913
[2025-11-26 08:36:40] 2025-11-26 13:36:40,425 [wrapper] cleanup supervisor_pilot 2408325 3114460
[2025-11-26 08:36:40] 2025-11-26 13:36:40,448 [wrapper] Test setup, not cleaning
[2025-11-26 08:36:40] 2025-11-26 13:36:40,485 [wrapper] apfmon messages muted
[2025-11-26 08:36:40] 2025-11-26 13:36:40,488 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:36:40] 2025-11-26 13:36:40,501 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:36:40]  *** Error codes and diagnostics ***
[2025-11-26 08:36:40]     "exeErrorCode": 0,
[2025-11-26 08:36:40]     "exeErrorDiag": "",
[2025-11-26 08:36:40]     "pilotErrorCode": 0,
[2025-11-26 08:36:40]     "pilotErrorDiag": "",
[2025-11-26 08:36:40]  *** Listing of results directory ***
[2025-11-26 08:36:40] total 1322316
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 02:53 pilot3.tar.gz
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 03:38 queuedata.json
[2025-11-26 08:36:40] -rwx------. 1 boincer umatlas     36292 Nov 24 03:39 runpilot2-wrapper.sh
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas       100 Nov 25 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:36:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 14:00 run_atlas
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas       105 Nov 25 14:00 job.xml
[2025-11-26 08:36:40] -rw-r--r--. 2 boincer umatlas 411172487 Nov 25 14:00 EVNT.47483658._001276.pool.root.1
[2025-11-26 08:36:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 14:00 start_atlas.sh
[2025-11-26 08:36:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 14:00 shared
[2025-11-26 08:36:40] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 14:00 input.tar.gz
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas         0 Nov 25 14:00 boinc_lockfile
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 14:00 pandaJob.out
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas        57 Nov 25 14:00 setup.sh.local
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas    991543 Nov 25 14:01 agis_schedconf.cvmfs.json
[2025-11-26 08:36:40] drwx------. 5 boincer umatlas      4096 Nov 25 14:01 pilot3
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:16 boinc_task_state.xml
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas      6842 Nov 26 08:30 init_data.xml
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas 918831848 Nov 26 08:33 HITS.47556149._002623.pool.root.1
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas      1058 Nov 26 08:35 memory_monitor_summary.json
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas        95 Nov 26 08:35 pilot_heartbeat.json
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:35 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas   2191352 Nov 26 08:35 log.47556149._002623.job.log.tgz.1
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas      8635 Nov 26 08:35 heartbeat.json
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:36 boinc_mmap_file
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:36 wrapper_checkpoint.txt
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas      5126 Nov 26 08:36 pilotlog.txt
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas   7871194 Nov 26 08:36 log.47556149._002623.job.log.1
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas       353 Nov 26 08:36 output.list
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:36 runtime_log
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas  10086400 Nov 26 08:36 result.tar.gz
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas       661 Nov 26 08:36 XfGLDmgHhh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOYLKDmqGQzwn.diag
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 08:36 runtime_log.err
[2025-11-26 08:36:40] -rw-r--r--. 1 boincer umatlas     21805 Nov 26 08:36 stderr.txt
[2025-11-26 08:36:40] HITS file was successfully produced:
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas 918831848 Nov 26 08:33 shared/HITS.pool.root.1
[2025-11-26 08:36:40]  *** Contents of shared directory: ***
[2025-11-26 08:36:40] total 1309288
[2025-11-26 08:36:40] -rw-r--r--. 2 boincer umatlas 411172487 Nov 25 14:00 ATLAS.root_0
[2025-11-26 08:36:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 14:00 start_atlas.sh
[2025-11-26 08:36:40] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 14:00 input.tar.gz
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas 918831848 Nov 26 08:33 HITS.pool.root.1
[2025-11-26 08:36:40] -rw-------. 1 boincer umatlas  10086400 Nov 26 08:36 result.tar.gz
08:36:42 (3104777): run_atlas exited; CPU time 247318.567785
08:36:42 (3104777): called boinc_finish(0)

</stderr_txt>
]]>

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