Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:49:21 (1440979): wrapper (7.7.26015): starting
13:49:21 (1440979): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:49:21] Arguments: --nthreads 8
[2025-11-25 13:49:21] Threads: 8
[2025-11-25 13:49:21] Checking for CVMFS
[2025-11-25 13:49:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:49:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:49:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:49:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:49:22] 2.13.2.0 6969 35653 230024 153293 2 381 39238685 40960000 25977 16776704 0 100951223 99.621 90078552 35883 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 13:49:22] CVMFS is ok
[2025-11-25 13:49:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:49:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:49:22] Further information can be found at the LHC@home message board.
[2025-11-25 13:49:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:49:22] Checking for apptainer binary...
[2025-11-25 13:49:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:49:22] Running /usr/bin/apptainer --version
[2025-11-25 13:49:22] apptainer version 1.4.4-1.el9
[2025-11-25 13:49:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:49:22] c-212-14.aglt2.org
[2025-11-25 13:49:22] apptainer works
[2025-11-25 13:49:22] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:49:22] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:49:22] Starting ATLAS job with PandaID=6896242941
[2025-11-25 13:49:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:50:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:50:54] 2025-11-26 05:55:40,219 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3121.6838854166667
[2025-11-26 02:50:54] 2025-11-26 05:55:40,232 | INFO     | monitor loop #2542: job 0:6896242941 is in state 'finished'
[2025-11-26 02:50:54] 2025-11-26 05:55:40,233 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:50:54] 2025-11-26 05:55:40,332 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896242941/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:50:54] 2025-11-26 05:55:40,332 | INFO     | extracted standard info from prmon json
[2025-11-26 02:50:54] 2025-11-26 05:55:40,332 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:50:54] 2025-11-26 05:55:40,332 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:50:54] 2025-11-26 05:55:40,424 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:50:54] 2025-11-26 05:55:40,425 | INFO     | sum of square deviations: 87137967844.24426
[2025-11-26 02:50:54] 2025-11-26 05:55:40,485 | INFO     | sum of deviations: 1195105093910.2446
[2025-11-26 02:50:54] 2025-11-26 05:55:40,485 | INFO     | mean x: 1764116554.7328243
[2025-11-26 02:50:54] 2025-11-26 05:55:40,485 | INFO     | mean y: 2836021.3328244276
[2025-11-26 02:50:54] 2025-11-26 05:55:40,485 | INFO     | intersect: -24192181753.021313
[2025-11-26 02:50:54] 2025-11-26 05:55:40,486 | INFO     | chi2: 7.989160142166293
[2025-11-26 02:50:54] 2025-11-26 05:55:40,510 | INFO     | sum of square deviations: 85157807344.0389
[2025-11-26 02:50:54] 2025-11-26 05:55:40,544 | INFO     | sum of deviations: 1425081659703.5847
[2025-11-26 02:50:54] 2025-11-26 05:55:40,544 | INFO     | mean x: 1764116402.2384615
[2025-11-26 02:50:54] 2025-11-26 05:55:40,544 | INFO     | mean y: 2853731.5446153847
[2025-11-26 02:50:54] 2025-11-26 05:55:40,544 | INFO     | intersect: -29518924820.780754
[2025-11-26 02:50:54] 2025-11-26 05:55:40,545 | INFO     | chi2: 4.458335745439254
[2025-11-26 02:50:54] 2025-11-26 05:55:40,545 | INFO     | current chi2=4.458335745439254 (change=44.19518865433133 %)
[2025-11-26 02:50:54] 2025-11-26 05:55:40,546 | INFO     | sum of square deviations: 83207801035.7613
[2025-11-26 02:50:54] 2025-11-26 05:55:40,615 | INFO     | sum of deviations: 1470810030108.057
[2025-11-26 02:50:54] 2025-11-26 05:55:40,615 | INFO     | mean x: 1764116249.7410853
[2025-11-26 02:50:54] 2025-11-26 05:55:40,615 | INFO     | mean y: 2857290.7488372093
[2025-11-26 02:50:54] 2025-11-26 05:55:40,615 | INFO     | intersect: -31180275085.032234
[2025-11-26 02:50:54] 2025-11-26 05:55:40,616 | INFO     | chi2: 4.0359645402000925
[2025-11-26 02:50:54] 2025-11-26 05:55:40,616 | INFO     | current chi2=4.0359645402000925 (change=9.473741533962196 %)
[2025-11-26 02:50:54] 2025-11-26 05:55:40,616 | INFO     | right removable region: 644
[2025-11-26 02:50:54] 2025-11-26 05:55:40,617 | INFO     | sum of square deviations: 85157514544.03902
[2025-11-26 02:50:54] 2025-11-26 05:55:40,684 | INFO     | sum of deviations: 959887713902.3143
[2025-11-26 02:50:54] 2025-11-26 05:55:40,685 | INFO     | mean x: 1764116707.2384615
[2025-11-26 02:50:54] 2025-11-26 05:55:40,685 | INFO     | mean y: 2854128.8753846153
[2025-11-26 02:50:54] 2025-11-26 05:55:40,685 | INFO     | intersect: -19882108017.26958
[2025-11-26 02:50:54] 2025-11-26 05:55:40,709 | INFO     | chi2: 4.630204617814517
[2025-11-26 02:50:54] 2025-11-26 05:55:40,710 | INFO     | current chi2=4.630204617814517 (change=42.04391280910013 %)
[2025-11-26 02:50:54] 2025-11-26 05:55:40,710 | INFO     | sum of square deviations: 83207294368.79082
[2025-11-26 02:50:54] 2025-11-26 05:55:40,763 | INFO     | sum of deviations: 866606753853.0012
[2025-11-26 02:50:54] 2025-11-26 05:55:40,763 | INFO     | mean x: 1764116859.7441862
[2025-11-26 02:50:54] 2025-11-26 05:55:40,763 | INFO     | mean y: 2861408.066666667
[2025-11-26 02:50:54] 2025-11-26 05:55:40,763 | INFO     | intersect: -18370474689.9002
[2025-11-26 02:50:54] 2025-11-26 05:55:40,764 | INFO     | chi2: 4.091742578046004
[2025-11-26 02:50:54] 2025-11-26 05:55:40,764 | INFO     | current chi2=4.091742578046004 (change=11.629335725181624 %)
[2025-11-26 02:50:54] 2025-11-26 05:55:40,764 | INFO     | left removable region: 20
[2025-11-26 02:50:54] 2025-11-26 05:55:40,765 | INFO     | sum of square deviations: 75342257805.48558
[2025-11-26 02:50:54] 2025-11-26 05:55:40,804 | INFO     | sum of deviations: 1063656193165.0676
[2025-11-26 02:50:54] 2025-11-26 05:55:40,804 | INFO     | mean x: 1764116829.2451923
[2025-11-26 02:50:54] 2025-11-26 05:55:40,804 | INFO     | mean y: 2889148.189102564
[2025-11-26 02:50:54] 2025-11-26 05:55:40,804 | INFO     | intersect: -24902308088.370903
[2025-11-26 02:50:54] 2025-11-26 05:55:40,805 | INFO     | chi2: 0.04723468265511029
[2025-11-26 02:50:54] 2025-11-26 05:55:40,805 | INFO     | current memory leak: 14.12 B/s (using 624 data points, chi2=0.05)
[2025-11-26 02:50:54] 2025-11-26 05:55:40,823 | INFO     | could have reported an average CPU frequency of 3132 MHz (25 samples)
[2025-11-26 02:50:54] 2025-11-26 05:55:40,823 | INFO     | ..............................
[2025-11-26 02:50:54] 2025-11-26 05:55:40,823 | INFO     | . Timing measurements:
[2025-11-26 02:50:54] 2025-11-26 05:55:40,824 | INFO     | . get job = 0 s
[2025-11-26 02:50:54] 2025-11-26 05:55:40,824 | INFO     | . initial setup = 2 s
[2025-11-26 02:50:54] 2025-11-26 05:55:40,824 | INFO     | . payload setup = 7 s
[2025-11-26 02:50:54] 2025-11-26 05:55:40,824 | INFO     | . stage-in = 0 s
[2025-11-26 02:50:54] 2025-11-26 05:55:40,824 | INFO     | . payload execution = 39920 s
[2025-11-26 02:50:54] 2025-11-26 05:55:40,824 | INFO     | . stage-out = 5 s
[2025-11-26 02:50:54] 2025-11-26 05:55:40,824 | INFO     | . log creation = 1 s
[2025-11-26 02:50:54] 2025-11-26 05:55:40,824 | INFO     | ..............................
[2025-11-26 02:50:54] 2025-11-26 05:55:40,871 | INFO     | time since job start (39964s) is within the limit (172800.0s)
[2025-11-26 02:50:54] 2025-11-26 05:55:41,403 | INFO     | 
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | job summary report
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | --------------------------------------------------
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | PanDA job id: 6896242941
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | task id: 47556185
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | errors: (none)
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | pilot state: finished 
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | transexitcode: 0
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | exeerrorcode: 0
[2025-11-26 02:50:54] 2025-11-26 05:55:41,404 | INFO     | exeerrordiag: 
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | exitcode: 0
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | exitmsg: OK
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | cpuconsumptiontime: 196156 s
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | nevents: 1000
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | neventsw: 0
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | pid: 1453069
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | pgrp: 1453069
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | corecount: 8
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | event service: False
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | sizes: {0: 2284139, 1: 2284338, 7: 2284600, 11: 2284628, 39929: 2328395, 39930: 2328394, 39936: 2337572, 39940: 2337628, 39948: 2337938}
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | --------------------------------------------------
[2025-11-26 02:50:54] 2025-11-26 05:55:41,405 | INFO     | 
[2025-11-26 02:50:54] 2025-11-26 05:55:41,406 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 02:50:54] 2025-11-26 05:55:41,468 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,468 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:50:54] 2025-11-26 05:55:41,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,470 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:50:54] 2025-11-26 05:55:41,470 | INFO     | job 6896242941 has completed (purged errors)
[2025-11-26 02:50:54] 2025-11-26 05:55:41,470 | INFO     | overall cleanup function is called
[2025-11-26 02:50:54] 2025-11-26 05:55:42,486 | INFO     | --- collectZombieJob: --- 10, [1453069]
[2025-11-26 02:50:54] 2025-11-26 05:55:42,487 | INFO     | zombie collector waiting for pid 1453069
[2025-11-26 02:50:54] 2025-11-26 05:55:42,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:50:54] 2025-11-26 05:55:42,487 | INFO     | collected zombie processes
[2025-11-26 02:50:54] 2025-11-26 05:55:42,487 | INFO     | will attempt to kill all subprocesses of pid=1453069
[2025-11-26 02:50:54] 2025-11-26 05:55:44,761 | INFO     | process IDs to be killed: [1453069] (in reverse order)
[2025-11-26 02:50:54] 2025-11-26 05:55:45,084 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:50:54] 2025-11-26 05:55:45,085 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:50:54] 2025-11-26 05:55:45,182 | INFO     | did not find any defunct processes belonging to 1453069
[2025-11-26 02:50:54] 2025-11-26 05:55:45,211 | INFO     | did not find any defunct processes belonging to 1453069
[2025-11-26 02:50:54] 2025-11-26 05:55:45,213 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:50:54] 2025-11-26 05:55:45,213 | INFO     | ready for new job
[2025-11-26 02:50:54] 2025-11-26 05:55:45,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:50:54] 2025-11-26 05:55:45,225 | INFO     | ***************************************
[2025-11-26 02:50:54] 2025-11-26 05:55:45,225 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:50:54] 2025-11-26 05:55:45,225 | INFO     | ***************************************
[2025-11-26 02:50:54] 2025-11-26 05:55:45,225 | INFO     | 
[2025-11-26 02:50:54] 2025-11-26 05:55:45,251 | INFO     | architecture information:
[2025-11-26 02:50:54] 2025-11-26 05:55:45,251 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:50:54] 2025-11-26 05:55:45,268 | INFO     | cat /etc/os-release:
[2025-11-26 02:50:54] NAME="CentOS Linux"
[2025-11-26 02:50:54] VERSION="7 (Core)"
[2025-11-26 02:50:54] ID="centos"
[2025-11-26 02:50:54] ID_LIKE="rhel fedora"
[2025-11-26 02:50:54] VERSION_ID="7"
[2025-11-26 02:50:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:50:54] ANSI_COLOR="0;31"
[2025-11-26 02:50:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:50:54] HOME_URL="https://www.centos.org/"
[2025-11-26 02:50:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:50:54] 
[2025-11-26 02:50:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:50:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:50:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:50:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:50:54] 
[2025-11-26 02:50:54] 2025-11-26 05:55:45,268 | INFO     | ***************************************
[2025-11-26 02:50:54] 2025-11-26 05:55:45,772 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 02:50:54] 2025-11-26 05:55:45,830 | INFO     | sufficient remaining disk space (119267131392 B)
[2025-11-26 02:50:54] 2025-11-26 05:55:45,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:50:54] 2025-11-26 05:55:45,830 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:50:54] 2025-11-26 05:55:45,830 | INFO     | update_server=False
[2025-11-26 02:50:54] 2025-11-26 05:55:45,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:50:54] 2025-11-26 05:55:45,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:50:54] 2025-11-26 05:55:45,966 | INFO     | all payload control threads have been joined
[2025-11-26 02:50:54] 2025-11-26 05:55:46,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:50:54] 2025-11-26 05:55:46,197 | INFO     | all job control threads have been joined
[2025-11-26 02:50:54] 2025-11-26 05:55:46,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:50:54] 2025-11-26 05:55:46,280 | INFO     | aborting loop
[2025-11-26 02:50:54] 2025-11-26 05:55:46,396 | INFO     | all data control threads have been joined
[2025-11-26 02:50:54] 2025-11-26 05:55:46,836 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:46,866 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:50:54] 2025-11-26 05:55:46,949 | INFO     | [job] validate thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:46,972 | INFO     | [payload] control thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:46,997 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,009 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,204 | INFO     | [job] control thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,286 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,402 | INFO     | [data] control thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,510 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,759 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:50:54] 2025-11-26 05:55:47,799 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,837 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,969 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:47,970 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:51,801 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:56,098 | INFO     | job.realtimelogging is not enabled
[2025-11-26 02:50:54] 2025-11-26 05:55:57,104 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:50:54] 2025-11-26 05:55:57,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140699481933632)>', '<ExcThread(monitor, started 140699135620864)>']
[2025-11-26 02:50:54] 2025-11-26 05:56:02,643 | INFO     | all workflow threads have been joined
[2025-11-26 02:50:54] 2025-11-26 05:56:02,644 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:50:54] 2025-11-26 05:56:02,644 | INFO     | traces error code: 0
[2025-11-26 02:50:54] 2025-11-26 05:56:02,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:50:54] 2025-11-26 05:56:15,948 | INFO     | PID=1444683 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:50:55] 2025-11-26 05:56:15,948 | INFO     | .. there are 29 such processes running
[2025-11-26 02:50:55] 2025-11-26 05:56:15,948 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:50:55] 2025-11-26 05:56:15,948 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:50:55] 2025-11-26 05:56:15,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:50:55] 2025-11-26 05:56:15,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:50:55] 2025-11-26 05:56:15,949 | INFO     | [monitor] control thread has ended
[2025-11-26 02:50:55] 2025-11-26 05:56:16,547 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:50:55] 2025-11-26 05:56:16,565 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:50:55] 2025-11-26 05:56:16,588 [wrapper] pilotpid: 1444683
[2025-11-26 02:50:55] 2025-11-26 05:56:16,641 [wrapper] Pilot exit status: 0
[2025-11-26 02:50:55] 2025-11-26 05:56:16,761 [wrapper] pandaids: 6896242941
[2025-11-26 02:50:55] 2025-11-26 05:56:17,177 [wrapper] cleanup supervisor_pilot 3464984 1444684
[2025-11-26 02:50:55] 2025-11-26 05:56:17,180 [wrapper] Test setup, not cleaning
[2025-11-26 02:50:55] 2025-11-26 05:56:17,197 [wrapper] apfmon messages muted
[2025-11-26 02:50:55] 2025-11-26 05:56:17,223 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:50:55] 2025-11-26 05:56:17,279 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:50:55]  *** Error codes and diagnostics ***
[2025-11-26 02:50:55]     "exeErrorCode": 0,
[2025-11-26 02:50:55]     "exeErrorDiag": "",
[2025-11-26 02:50:55]     "pilotErrorCode": 0,
[2025-11-26 02:50:55]     "pilotErrorDiag": "",
[2025-11-26 02:50:55]  *** Listing of results directory ***
[2025-11-26 02:50:55] total 1307740
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 15:01 pilot3.tar.gz
[2025-11-26 02:50:55] -rwx------. 1 boincer umatlas     36292 Nov 24 15:51 runpilot2-wrapper.sh
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 15:51 queuedata.json
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas       100 Nov 25 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:50:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 13:49 run_atlas
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas       105 Nov 25 13:49 job.xml
[2025-11-26 02:50:55] -rw-r--r--. 2 boincer umatlas 408886875 Nov 25 13:49 EVNT.47483658._004244.pool.root.1
[2025-11-26 02:50:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:49 start_atlas.sh
[2025-11-26 02:50:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 13:49 shared
[2025-11-26 02:50:55] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 13:49 input.tar.gz
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas         0 Nov 25 13:49 boinc_lockfile
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 13:49 pandaJob.out
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas        57 Nov 25 13:49 setup.sh.local
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas    991543 Nov 25 13:49 agis_schedconf.cvmfs.json
[2025-11-26 02:50:55] drwx------. 5 boincer umatlas      4096 Nov 25 13:49 pilot3
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas       532 Nov 26 00:46 boinc_task_state.xml
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas 912043964 Nov 26 00:54 HITS.47556185._000077.pool.root.1
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas      1064 Nov 26 00:55 memory_monitor_summary.json
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas   1516240 Nov 26 00:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas   1892314 Nov 26 00:55 log.47556185._000077.job.log.tgz.1
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas      8608 Nov 26 00:55 heartbeat.json
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas        95 Nov 26 00:55 pilot_heartbeat.json
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas       823 Nov 26 00:56 pilotlog.txt
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas   5248200 Nov 26 00:56 log.47556185._000077.job.log.1
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas       353 Nov 26 00:56 output.list
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas       620 Nov 26 00:56 runtime_log
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas   7157760 Nov 26 00:56 result.tar.gz
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas       665 Nov 26 00:56 zGhNDm2hsh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgCJKDm6bSJhn.diag
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 00:56 runtime_log.err
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 02:46 init_data.xml
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas        29 Nov 26 02:50 wrapper_checkpoint.txt
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 02:50 boinc_mmap_file
[2025-11-26 02:50:55] -rw-r--r--. 1 boincer umatlas     21355 Nov 26 02:50 stderr.txt
[2025-11-26 02:50:55] HITS file was successfully produced:
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas 912043964 Nov 26 00:54 shared/HITS.pool.root.1
[2025-11-26 02:50:55]  *** Contents of shared directory: ***
[2025-11-26 02:50:55] total 1297568
[2025-11-26 02:50:55] -rw-r--r--. 2 boincer umatlas 408886875 Nov 25 13:49 ATLAS.root_0
[2025-11-26 02:50:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:49 start_atlas.sh
[2025-11-26 02:50:55] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 13:49 input.tar.gz
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas 912043964 Nov 26 00:54 HITS.pool.root.1
[2025-11-26 02:50:55] -rw-------. 1 boincer umatlas   7157760 Nov 26 00:56 result.tar.gz
02:50:56 (1440979): run_atlas exited; CPU time 196343.506825
02:50:56 (1440979): called boinc_finish(0)

</stderr_txt>
]]>

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