Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:04:28 (1099794): wrapper (7.7.26015): starting
20:04:28 (1099794): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 20:04:28] Arguments: --nthreads 3
[2025-11-25 20:04:28] Threads: 3
[2025-11-25 20:04:28] Checking for CVMFS
[2025-11-25 20:04:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:04:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:04:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:04:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:04:28] 2.9.2.0 411005 423 68368 153293 1 129 35280844 36864000 0 130560 0 2046199 99.998 17299 12418 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 20:04:28] CVMFS is ok
[2025-11-25 20:04:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:04:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:04:28] Further information can be found at the LHC@home message board.
[2025-11-25 20:04:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:04:28] Checking for apptainer binary...
[2025-11-25 20:04:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:04:28] Running /usr/bin/apptainer --version
[2025-11-25 20:04:28] apptainer version 1.4.1-1.1
[2025-11-25 20:04:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:04:28] thA335
[2025-11-25 20:04:28] apptainer works
[2025-11-25 20:04:28] Set ATHENA_PROC_NUMBER=3
[2025-11-25 20:04:28] Set ATHENA_CORE_NUMBER=3
[2025-11-25 20:04:28] Starting ATLAS job with PandaID=6896242904
[2025-11-25 20:04:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:08:48]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:08:48] 2025-11-25 19:08:02,091 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 20:08:48] 2025-11-25 19:08:02,091 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 20:08:48] 2025-11-25 19:08:02,092 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:08:48] 2025-11-25 19:08:02,092 | INFO     | will abort loop
[2025-11-25 20:08:48] 2025-11-25 19:08:02,225 | INFO     | all payload control threads have been joined
[2025-11-25 20:08:48] 2025-11-25 19:08:02,742 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:02,743 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:02,771 | INFO     | [data] control thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,091 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,097 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,158 | INFO     | [job] validate thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,231 | INFO     | [payload] control thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,241 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,255 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,307 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,393 | INFO     | all job control threads have been joined
[2025-11-25 20:08:48] 2025-11-25 19:08:03,394 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,743 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,802 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:03,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:08:48] 2025-11-25 19:08:04,032 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:04,399 | INFO     | [job] control thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:07,884 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:08:48] 2025-11-25 19:08:41,939 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:08:48] 2025-11-25 19:08:43,717 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139801824331584)>', '<ExcThread(monitor, started 139801101588224)>']
[2025-11-25 20:08:48] 2025-11-25 19:08:43,961 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:08:48] 2025-11-25 19:08:43,961 | INFO     | [monitor] control thread has ended
[2025-11-25 20:08:48] 2025-11-25 19:08:48,743 | INFO     | all workflow threads have been joined
[2025-11-25 20:08:48] 2025-11-25 19:08:48,744 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:08:48] 2025-11-25 19:08:48,744 | INFO     | traces error code: 0
[2025-11-25 20:08:48] 2025-11-25 19:08:48,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:08:48] 2025-11-25 19:08:48,792 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:08:48] 2025-11-25 19:08:48,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:08:48] 2025-11-25 19:08:48,798 [wrapper] pilotpid: 1103523
[2025-11-25 20:08:48] 2025-11-25 19:08:48,801 [wrapper] Pilot exit status: 0
[2025-11-25 20:08:48] 2025-11-25 19:08:48,808 [wrapper] pandaids: 6896242904
[2025-11-25 20:08:48] 2025-11-25 19:08:48,824 [wrapper] cleanup supervisor_pilot 1103529 1103524
[2025-11-25 20:08:48] 2025-11-25 19:08:48,826 [wrapper] Test setup, not cleaning
[2025-11-25 20:08:48] 2025-11-25 19:08:48,829 [wrapper] apfmon messages muted
[2025-11-25 20:08:48] 2025-11-25 19:08:48,831 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:08:48] 2025-11-25 19:08:48,834 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:08:48]  *** Error codes and diagnostics ***
[2025-11-25 20:08:48]     "exeErrorCode": 65,
[2025-11-25 20:08:48]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:08:48]     "pilotErrorCode": 1305,
[2025-11-25 20:08:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:08:48]  *** Listing of results directory ***
[2025-11-25 20:08:48] total 404484
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc    576529 Nov 24 21:01 pilot3.tar.gz
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc      5112 Nov 24 21:42 queuedata.json
[2025-11-25 20:08:48] -rwx------ 1 boinc boinc     36292 Nov 24 21:44 runpilot2-wrapper.sh
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc       100 Nov 25 20:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:08:48] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 20:04 run_atlas
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc       105 Nov 25 20:04 job.xml
[2025-11-25 20:08:48] -rw-r--r-- 2 boinc boinc 409986680 Nov 25 20:04 EVNT.47483658._003056.pool.root.1
[2025-11-25 20:08:48] -rw-r--r-- 2 boinc boinc    590106 Nov 25 20:04 input.tar.gz
[2025-11-25 20:08:48] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:04 start_atlas.sh
[2025-11-25 20:08:48] drwxrwx--x 2 boinc boinc      4096 Nov 25 20:04 shared
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:04 boinc_setup_complete
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc      6196 Nov 25 20:04 init_data.xml
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:04 boinc_lockfile
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc      2784 Nov 25 20:04 pandaJob.out
[2025-11-25 20:08:48] -rw------- 1 boinc boinc    991543 Nov 25 20:04 agis_schedconf.cvmfs.json
[2025-11-25 20:08:48] -rw------- 1 boinc boinc   1516240 Nov 25 20:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:08:48] drwx------ 5 boinc boinc      4096 Nov 25 20:04 pilot3
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc       522 Nov 25 20:05 boinc_task_state.xml
[2025-11-25 20:08:48] -rw------- 1 boinc boinc       939 Nov 25 20:05 memory_monitor_summary.json
[2025-11-25 20:08:48] -rw------- 1 boinc boinc     56239 Nov 25 20:05 log.47556173._000383.job.log.tgz.1
[2025-11-25 20:08:48] -rw------- 1 boinc boinc        95 Nov 25 20:07 pilot_heartbeat.json
[2025-11-25 20:08:48] -rw------- 1 boinc boinc      8415 Nov 25 20:08 heartbeat.json
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc      8192 Nov 25 20:08 boinc_mmap_file
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc        22 Nov 25 20:08 wrapper_checkpoint.txt
[2025-11-25 20:08:48] -rw------- 1 boinc boinc      4742 Nov 25 20:08 pilotlog.txt
[2025-11-25 20:08:48] -rw------- 1 boinc boinc     94369 Nov 25 20:08 log.47556173._000383.job.log.1
[2025-11-25 20:08:48] -rw------- 1 boinc boinc       186 Nov 25 20:08 output.list
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc       620 Nov 25 20:08 runtime_log
[2025-11-25 20:08:48] -rw------- 1 boinc boinc    174080 Nov 25 20:08 result.tar.gz
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc      8744 Nov 25 20:08 runtime_log.err
[2025-11-25 20:08:48] -rw------- 1 boinc boinc       649 Nov 25 20:08 MekNDmFbsh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaCJKDmCGa70n.diag
[2025-11-25 20:08:48] -rw-r--r-- 1 boinc boinc      6886 Nov 25 20:08 stderr.txt
[2025-11-25 20:08:48] No HITS result produced
[2025-11-25 20:08:48]  *** Contents of shared directory: ***
[2025-11-25 20:08:48] total 401152
[2025-11-25 20:08:48] -rw-r--r-- 2 boinc boinc 409986680 Nov 25 20:04 ATLAS.root_0
[2025-11-25 20:08:48] -rw-r--r-- 2 boinc boinc    590106 Nov 25 20:04 input.tar.gz
[2025-11-25 20:08:48] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:04 start_atlas.sh
[2025-11-25 20:08:48] -rw------- 1 boinc boinc    174080 Nov 25 20:08 result.tar.gz
20:08:50 (1099794): run_atlas exited; CPU time 32.523999
20:08:50 (1099794): called boinc_finish(0)

</stderr_txt>
]]>

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