Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:29:37 (13998): wrapper (7.7.26015): starting
13:29:37 (13998): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:29:37] Arguments: --nthreads 8
[2025-11-25 13:29:37] Threads: 8
[2025-11-25 13:29:37] Checking for CVMFS
[2025-11-25 13:29:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:29:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:29:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:29:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:29:38] 2.11.2.0 2822 72220 84832 153293 0 81 18005879 20275200 1 130560 0 20358672 99.868 4204084 31815 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 13:29:38] CVMFS is ok
[2025-11-25 13:29:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:29:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:29:38] Further information can be found at the LHC@home message board.
[2025-11-25 13:29:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:29:38] Checking for apptainer binary...
[2025-11-25 13:29:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:29:38] Running /usr/bin/apptainer --version
[2025-11-25 13:29:38] apptainer version 1.3.2-1.el7
[2025-11-25 13:29:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:29:40] c-204-37.aglt2.org
[2025-11-25 13:29:40] apptainer works
[2025-11-25 13:29:40] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:29:40] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:29:40] Starting ATLAS job with PandaID=6894238252
[2025-11-25 13:29:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:14:07 (26664): wrapper (7.7.26015): starting
14:14:07 (26664): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 14:14:07] Arguments: --nthreads 8
[2025-11-25 14:14:07] Threads: 8
[2025-11-25 14:14:07] This job has been restarted, cleaning up previous attempt
[2025-11-25 14:14:07] Checking for CVMFS
[2025-11-25 14:14:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:14:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:14:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:14:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:14:08] 2.11.2.0 2822 72265 84008 153295 4 1 19303171 20275200 1 130560 0 20419758 99.844 4661676 32399 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 14:14:08] CVMFS is ok
[2025-11-25 14:14:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:14:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:14:08] Further information can be found at the LHC@home message board.
[2025-11-25 14:14:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:14:08] Checking for apptainer binary...
[2025-11-25 14:14:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:14:08] Running /usr/bin/apptainer --version
[2025-11-25 14:14:08] apptainer version 1.3.2-1.el7
[2025-11-25 14:14:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:14:10] c-204-37.aglt2.org
[2025-11-25 14:14:10] apptainer works
[2025-11-25 14:14:10] Set ATHENA_PROC_NUMBER=8
[2025-11-25 14:14:10] Set ATHENA_CORE_NUMBER=8
[2025-11-25 14:14:10] Starting ATLAS job with PandaID=6894238252
[2025-11-25 14:14:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:46:12]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:46:12] 2025-11-26 01:45:20,888 | INFO     | monitor loop #1702: job 0:6894238252 is in state 'finished'
[2025-11-25 20:46:12] 2025-11-26 01:45:20,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,750 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 20:46:12] 2025-11-26 01:45:21,753 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-25 20:46:12] 2025-11-26 01:45:21,755 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894238252/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,756 | INFO     | extracted standard info from prmon json
[2025-11-25 20:46:12] 2025-11-26 01:45:21,756 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:46:12] 2025-11-26 01:45:21,757 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:46:12] 2025-11-26 01:45:21,757 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 20:46:12] 2025-11-26 01:45:21,757 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 20:46:12] 2025-11-26 01:45:21,764 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:46:12] 2025-11-26 01:45:21,764 | INFO     | sum of square deviations: 17557761760.0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,768 | INFO     | sum of deviations: -62216782982.000015
[2025-11-25 20:46:12] 2025-11-26 01:45:21,768 | INFO     | mean x: 1764109784.5
[2025-11-25 20:46:12] 2025-11-26 01:45:21,768 | INFO     | mean y: 2562039.4791666665
[2025-11-25 20:46:12] 2025-11-26 01:45:21,768 | INFO     | intersect: 6253770884.829129
[2025-11-25 20:46:12] 2025-11-26 01:45:21,768 | INFO     | chi2: 2.6431120261843333
[2025-11-25 20:46:12] 2025-11-26 01:45:21,769 | INFO     | sum of square deviations: 16880800230.0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,772 | INFO     | sum of deviations: -33913201442.00002
[2025-11-25 20:46:12] 2025-11-26 01:45:21,772 | INFO     | mean x: 1764109632.0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,773 | INFO     | mean y: 2568350.0712401057
[2025-11-25 20:46:12] 2025-11-26 01:45:21,773 | INFO     | intersect: 3546630509.4863286
[2025-11-25 20:46:12] 2025-11-26 01:45:21,773 | INFO     | chi2: 1.7794935171569197
[2025-11-25 20:46:12] 2025-11-26 01:45:21,773 | INFO     | current chi2=1.7794935171569197 (change=32.67430591181397 %)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,774 | INFO     | sum of square deviations: 16221466937.5
[2025-11-25 20:46:12] 2025-11-26 01:45:21,777 | INFO     | sum of deviations: -33326799231.000027
[2025-11-25 20:46:12] 2025-11-26 01:45:21,777 | INFO     | mean x: 1764109479.5
[2025-11-25 20:46:12] 2025-11-26 01:45:21,777 | INFO     | mean y: 2568485.8502673795
[2025-11-25 20:46:12] 2025-11-26 01:45:21,778 | INFO     | intersect: 3626909161.778144
[2025-11-25 20:46:12] 2025-11-26 01:45:21,778 | INFO     | chi2: 1.7789148816744615
[2025-11-25 20:46:12] 2025-11-26 01:45:21,778 | INFO     | current chi2=1.7789148816744615 (change=0.032516863752482736 %)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,778 | INFO     | right removable region: 373
[2025-11-25 20:46:12] 2025-11-26 01:45:21,779 | INFO     | sum of square deviations: 16880800230.0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,782 | INFO     | sum of deviations: -121779772797.99985
[2025-11-25 20:46:12] 2025-11-26 01:45:21,782 | INFO     | mean x: 1764109937.0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,782 | INFO     | mean y: 2575376.751978892
[2025-11-25 20:46:12] 2025-11-26 01:45:21,782 | INFO     | intersect: 12729040022.471788
[2025-11-25 20:46:12] 2025-11-26 01:45:21,783 | INFO     | chi2: 1.2082528064734255
[2025-11-25 20:46:12] 2025-11-26 01:45:21,783 | INFO     | current chi2=1.2082528064734255 (change=54.28673493579872 %)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,784 | INFO     | sum of square deviations: 16221466937.5
[2025-11-25 20:46:12] 2025-11-26 01:45:21,787 | INFO     | sum of deviations: -130532628180.5
[2025-11-25 20:46:12] 2025-11-26 01:45:21,787 | INFO     | mean x: 1764110089.5
[2025-11-25 20:46:12] 2025-11-26 01:45:21,787 | INFO     | mean y: 2577401.168449198
[2025-11-25 20:46:12] 2025-11-26 01:45:21,787 | INFO     | intersect: 14198206395.105858
[2025-11-25 20:46:12] 2025-11-26 01:45:21,788 | INFO     | chi2: 1.1704525301647921
[2025-11-25 20:46:12] 2025-11-26 01:45:21,788 | INFO     | current chi2=1.1704525301647921 (change=3.128507221842298 %)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,788 | INFO     | left removable region: 20
[2025-11-25 20:46:12] 2025-11-26 01:45:21,788 | INFO     | sum of square deviations: 13639518992.0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,791 | INFO     | sum of deviations: -89526476760.00005
[2025-11-25 20:46:12] 2025-11-26 01:45:21,791 | INFO     | mean x: 1764110059.0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,792 | INFO     | mean y: 2581714.402266289
[2025-11-25 20:46:12] 2025-11-26 01:45:21,792 | INFO     | intersect: 11581769975.497053
[2025-11-25 20:46:12] 2025-11-26 01:45:21,792 | INFO     | chi2: 0.2649808512229209
[2025-11-25 20:46:12] 2025-11-26 01:45:21,792 | INFO     | current memory leak: -6.56 B/s (using 353 data points, chi2=0.26)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,793 | INFO     | could have reported an average CPU frequency of 2131 MHz (16 samples)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,793 | INFO     | ..............................
[2025-11-25 20:46:12] 2025-11-26 01:45:21,793 | INFO     | . Timing measurements:
[2025-11-25 20:46:12] 2025-11-26 01:45:21,793 | INFO     | . get job = 0 s
[2025-11-25 20:46:12] 2025-11-26 01:45:21,793 | INFO     | . initial setup = 1 s
[2025-11-25 20:46:12] 2025-11-26 01:45:21,793 | INFO     | . payload setup = 9 s
[2025-11-25 20:46:12] 2025-11-26 01:45:21,793 | INFO     | . stage-in = 0 s
[2025-11-25 20:46:12] 2025-11-26 01:45:21,794 | INFO     | . payload execution = 23410 s
[2025-11-25 20:46:12] 2025-11-26 01:45:21,794 | INFO     | . stage-out = 2 s
[2025-11-25 20:46:12] 2025-11-26 01:45:21,794 | INFO     | . log creation = 0 s
[2025-11-25 20:46:12] 2025-11-26 01:45:21,794 | INFO     | ..............................
[2025-11-25 20:46:12] 2025-11-26 01:45:21,884 | INFO     | 
[2025-11-25 20:46:12] 2025-11-26 01:45:21,884 | INFO     | job summary report
[2025-11-25 20:46:12] 2025-11-26 01:45:21,884 | INFO     | --------------------------------------------------
[2025-11-25 20:46:12] 2025-11-26 01:45:21,884 | INFO     | PanDA job id: 6894238252
[2025-11-25 20:46:12] 2025-11-26 01:45:21,885 | INFO     | task id: 47523675
[2025-11-25 20:46:12] 2025-11-26 01:45:21,885 | INFO     | errors: (none)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,885 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:46:12] 2025-11-26 01:45:21,885 | INFO     | pilot state: finished 
[2025-11-25 20:46:12] 2025-11-26 01:45:21,885 | INFO     | transexitcode: 0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,886 | INFO     | exeerrorcode: 0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,886 | INFO     | exeerrordiag: 
[2025-11-25 20:46:12] 2025-11-26 01:45:21,886 | INFO     | exitcode: 0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,886 | INFO     | exitmsg: OK
[2025-11-25 20:46:12] 2025-11-26 01:45:21,886 | INFO     | cpuconsumptiontime: 177955 s
[2025-11-25 20:46:12] 2025-11-26 01:45:21,886 | INFO     | nevents: 400
[2025-11-25 20:46:12] 2025-11-26 01:45:21,887 | INFO     | neventsw: 0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,887 | INFO     | pid: 4400
[2025-11-25 20:46:12] 2025-11-26 01:45:21,887 | INFO     | pgrp: 4400
[2025-11-25 20:46:12] 2025-11-26 01:45:21,887 | INFO     | corecount: 8
[2025-11-25 20:46:12] 2025-11-26 01:45:21,887 | INFO     | event service: False
[2025-11-25 20:46:12] 2025-11-26 01:45:21,887 | INFO     | sizes: {0: 2283950, 6: 2284212, 11: 2284240, 23423: 2319204, 23424: 2319203, 23428: 2328441, 23434: 2328579}
[2025-11-25 20:46:12] 2025-11-26 01:45:21,887 | INFO     | --------------------------------------------------
[2025-11-25 20:46:12] 2025-11-26 01:45:21,887 | INFO     | 
[2025-11-25 20:46:12] 2025-11-26 01:45:21,888 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 20:46:12] 2025-11-26 01:45:21,916 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,917 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,917 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,917 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,917 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,918 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,918 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,918 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,918 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,918 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,918 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,919 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,919 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,919 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,919 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,919 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,919 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,919 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,920 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:46:12] 2025-11-26 01:45:21,920 | INFO     | job 6894238252 has completed (purged errors)
[2025-11-25 20:46:12] 2025-11-26 01:45:21,920 | INFO     | overall cleanup function is called
[2025-11-25 20:46:12] 2025-11-26 01:45:22,927 | INFO     | --- collectZombieJob: --- 10, [4400]
[2025-11-25 20:46:12] 2025-11-26 01:45:22,927 | INFO     | zombie collector waiting for pid 4400
[2025-11-25 20:46:12] 2025-11-26 01:45:23,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:46:12] 2025-11-26 01:45:23,363 | INFO     | collected zombie processes
[2025-11-25 20:46:12] 2025-11-26 01:45:23,363 | INFO     | will attempt to kill all subprocesses of pid=4400
[2025-11-25 20:46:12] 2025-11-26 01:45:23,453 | INFO     | process IDs to be killed: [4400] (in reverse order)
[2025-11-25 20:46:12] 2025-11-26 01:45:23,510 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:46:12] 2025-11-26 01:45:23,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:46:12] 2025-11-26 01:45:23,515 | INFO     | did not find any defunct processes belonging to 4400
[2025-11-25 20:46:12] 2025-11-26 01:45:23,519 | INFO     | did not find any defunct processes belonging to 4400
[2025-11-25 20:46:12] 2025-11-26 01:45:23,521 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:46:12] 2025-11-26 01:45:23,521 | INFO     | ready for new job
[2025-11-25 20:46:12] 2025-11-26 01:45:23,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:46:12] 2025-11-26 01:45:23,523 | INFO     | ***************************************
[2025-11-25 20:46:12] 2025-11-26 01:45:23,524 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:46:12] 2025-11-26 01:45:23,524 | INFO     | ***************************************
[2025-11-25 20:46:12] 2025-11-26 01:45:23,524 | INFO     | 
[2025-11-25 20:46:12] 2025-11-26 01:45:23,524 | INFO     | architecture information:
[2025-11-25 20:46:12] 2025-11-26 01:45:23,525 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:46:12] 2025-11-26 01:45:23,543 | INFO     | cat /etc/os-release:
[2025-11-25 20:46:12] NAME="CentOS Linux"
[2025-11-25 20:46:12] VERSION="7 (Core)"
[2025-11-25 20:46:12] ID="centos"
[2025-11-25 20:46:12] ID_LIKE="rhel fedora"
[2025-11-25 20:46:12] VERSION_ID="7"
[2025-11-25 20:46:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:46:12] ANSI_COLOR="0;31"
[2025-11-25 20:46:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:46:12] HOME_URL="https://www.centos.org/"
[2025-11-25 20:46:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:46:12] 
[2025-11-25 20:46:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:46:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:46:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:46:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:46:12] 
[2025-11-25 20:46:12] 2025-11-26 01:45:23,543 | INFO     | ***************************************
[2025-11-25 20:46:12] 2025-11-26 01:45:24,046 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 20:46:12] 2025-11-26 01:45:24,067 | INFO     | sufficient remaining disk space (18268291072 B)
[2025-11-25 20:46:12] 2025-11-26 01:45:24,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:46:12] 2025-11-26 01:45:24,067 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:46:12] 2025-11-26 01:45:24,068 | INFO     | update_server=False
[2025-11-25 20:46:12] 2025-11-26 01:45:24,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:46:12] 2025-11-26 01:45:24,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:46:12] 2025-11-26 01:45:24,142 | INFO     | all data control threads have been joined
[2025-11-25 20:46:12] 2025-11-26 01:45:24,399 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:46:12] 2025-11-26 01:45:24,399 | INFO     | aborting loop
[2025-11-25 20:46:12] 2025-11-26 01:45:24,928 | INFO     | all payload control threads have been joined
[2025-11-25 20:46:12] 2025-11-26 01:45:25,071 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:25,148 | INFO     | [data] control thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:25,390 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:25,404 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:25,436 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:25,510 | INFO     | [job] validate thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:25,609 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:25,617 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:25,650 | INFO     | all job control threads have been joined
[2025-11-25 20:46:12] 2025-11-26 01:45:25,932 | INFO     | [payload] control thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:26,074 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:26,215 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:46:12] 2025-11-26 01:45:26,509 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:26,510 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:26,617 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:26,656 | INFO     | [job] control thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:26,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:46:12] 2025-11-26 01:45:27,896 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:30,216 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:46:12] 2025-11-26 01:45:53,210 | INFO     | PID=30356 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 20:46:12] 2025-11-26 01:45:53,211 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:46:12] 2025-11-26 01:45:53,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:46:12] 2025-11-26 01:45:53,211 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:46:12] 2025-11-26 01:46:07,177 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:46:12] 2025-11-26 01:46:07,512 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139637837420352)>', '<ExcThread(monitor, started 139637012023040)>']
[2025-11-25 20:46:12] 2025-11-26 01:46:08,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:46:12] 2025-11-26 01:46:08,287 | INFO     | [monitor] control thread has ended
[2025-11-25 20:46:12] 2025-11-26 01:46:12,520 | INFO     | all workflow threads have been joined
[2025-11-25 20:46:12] 2025-11-26 01:46:12,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:46:12] 2025-11-26 01:46:12,520 | INFO     | traces error code: 0
[2025-11-25 20:46:12] 2025-11-26 01:46:12,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:46:12] 2025-11-26 01:46:12,640 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:46:12] 2025-11-26 01:46:12,644 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:46:12] 2025-11-26 01:46:12,649 [wrapper] pilotpid: 30356
[2025-11-25 20:46:12] 2025-11-26 01:46:12,653 [wrapper] Pilot exit status: 0
[2025-11-25 20:46:12] 2025-11-26 01:46:12,672 [wrapper] pandaids: 6894238252 6894238252
[2025-11-25 20:46:12] 2025-11-26 01:46:12,729 [wrapper] cleanup supervisor_pilot 29371 30357
[2025-11-25 20:46:12] 2025-11-26 01:46:12,735 [wrapper] Test setup, not cleaning
[2025-11-25 20:46:12] 2025-11-26 01:46:12,739 [wrapper] apfmon messages muted
[2025-11-25 20:46:12] 2025-11-26 01:46:12,743 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:46:12] 2025-11-26 01:46:12,748 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:46:12]  *** Error codes and diagnostics ***
[2025-11-25 20:46:12]     "exeErrorCode": 0,
[2025-11-25 20:46:12]     "exeErrorDiag": "",
[2025-11-25 20:46:12]     "pilotErrorCode": 0,
[2025-11-25 20:46:12]     "pilotErrorDiag": "",
[2025-11-25 20:46:12]  *** Listing of results directory ***
[2025-11-25 20:46:12] total 893584
[2025-11-25 20:46:12] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 15:01 pilot3.tar.gz
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 15:16 queuedata.json
[2025-11-25 20:46:12] -rwx------ 1 boincer umatlas     36292 Nov 24 15:17 runpilot2-wrapper.sh
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas       100 Nov 25 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:46:12] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 13:29 run_atlas
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas       105 Nov 25 13:29 job.xml
[2025-11-25 20:46:12] -rw-r--r-- 3 boincer umatlas 281027544 Nov 25 13:29 EVNT.47523673._000002.pool.root.1
[2025-11-25 20:46:12] -rw-r--r-- 3 boincer umatlas 281027544 Nov 25 13:29 ATLAS.root_0
[2025-11-25 20:46:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 13:29 start_atlas.sh
[2025-11-25 20:46:12] drwxrwx--x 2 boincer umatlas      4096 Nov 25 13:29 shared
[2025-11-25 20:46:12] -rw-r--r-- 2 boincer umatlas    589945 Nov 25 13:29 input.tar.gz
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas         0 Nov 25 13:29 boinc_lockfile
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas      2613 Nov 25 14:14 pandaJob.out
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas        57 Nov 25 14:14 setup.sh.local
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas    991893 Nov 25 14:14 agis_schedconf.cvmfs.json
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas      5913 Nov 25 20:36 init_data.xml
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas 341534228 Nov 25 20:44 HITS.47523675._000032.pool.root.1
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas       533 Nov 25 20:44 boinc_task_state.xml
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas      1051 Nov 25 20:45 memory_monitor_summary.json
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas   1516240 Nov 25 20:45 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas    579525 Nov 25 20:45 log.47523675._000032.job.log.tgz.1
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas        96 Nov 25 20:45 pilot_heartbeat.json
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas      7842 Nov 25 20:45 heartbeat.json
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 20:46 boinc_mmap_file
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas        29 Nov 25 20:46 wrapper_checkpoint.txt
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas      4746 Nov 25 20:46 pilotlog.txt
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas   3179079 Nov 25 20:46 log.47523675._000032.job.log.1
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas       357 Nov 25 20:46 output.list
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas       620 Nov 25 20:46 runtime_log
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas   3778560 Nov 25 20:46 result.tar.gz
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas       789 Nov 25 20:46 upKODmKBsh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGCJKDm7Q9QOm.diag
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas      9428 Nov 25 20:46 runtime_log.err
[2025-11-25 20:46:12] -rw-r--r-- 1 boincer umatlas     23346 Nov 25 20:46 stderr.txt
[2025-11-25 20:46:12] HITS file was successfully produced:
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas 341534228 Nov 25 20:44 shared/HITS.pool.root.1
[2025-11-25 20:46:12]  *** Contents of shared directory: ***
[2025-11-25 20:46:12] total 612268
[2025-11-25 20:46:12] -rw-r--r-- 3 boincer umatlas 281027544 Nov 25 13:29 ATLAS.root_0
[2025-11-25 20:46:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 13:29 start_atlas.sh
[2025-11-25 20:46:12] -rw-r--r-- 2 boincer umatlas    589945 Nov 25 13:29 input.tar.gz
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas 341534228 Nov 25 20:44 HITS.pool.root.1
[2025-11-25 20:46:12] -rw------- 1 boincer umatlas   3778560 Nov 25 20:46 result.tar.gz
20:46:14 (26664): run_atlas exited; CPU time 177923.225975
20:46:14 (26664): called boinc_finish(0)

</stderr_txt>
]]>

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