Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:11:42 (206706): wrapper (7.7.26015): starting
14:11:42 (206706): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 14:11:42] Arguments: --nthreads 8
[2025-11-25 14:11:42] Threads: 8
[2025-11-25 14:11:42] Checking for CVMFS
[2025-11-25 14:11:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:11:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:11:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:11:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:11:42] 2.13.3.0 12388 28967 219584 153294 2 134 28595261 32935937 35670 16776704 0 115189398 99.491 138091992 36483 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 14:11:42] CVMFS is ok
[2025-11-25 14:11:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:11:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:11:42] Further information can be found at the LHC@home message board.
[2025-11-25 14:11:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:11:42] Checking for apptainer binary...
[2025-11-25 14:11:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:11:42] Running /usr/bin/apptainer --version
[2025-11-25 14:11:43] apptainer version 1.4.4-1.el9
[2025-11-25 14:11:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:11:43] c7-4-31.aglt2.org
[2025-11-25 14:11:43] apptainer works
[2025-11-25 14:11:43] Set ATHENA_PROC_NUMBER=8
[2025-11-25 14:11:43] Set ATHENA_CORE_NUMBER=8
[2025-11-25 14:11:43] Starting ATLAS job with PandaID=6896242879
[2025-11-25 14:11:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:00:16]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:00:16] 2025-11-26 11:59:25,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:00:16] 2025-11-26 11:59:26,059 | INFO     | PID=210614 has CPU usage=17.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 07:00:16] 2025-11-26 11:59:26,059 | INFO     | .. there are 49 such processes running
[2025-11-26 07:00:16] 2025-11-26 11:59:27,072 | INFO     | time since job start (60450s) is within the limit (172800.0s)
[2025-11-26 07:00:16] 2025-11-26 11:59:27,919 | INFO     | monitor loop #3509: job 0:6896242879 is in state 'finished'
[2025-11-26 07:00:16] 2025-11-26 11:59:27,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:00:16] 2025-11-26 11:59:29,077 | INFO     | time since job start (60452s) is within the limit (172800.0s)
[2025-11-26 07:00:16] 2025-11-26 11:59:30,426 | INFO     | monitor loop #3510: job 0:6896242879 is in state 'finished'
[2025-11-26 07:00:16] 2025-11-26 11:59:30,427 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:00:16] 2025-11-26 11:59:31,087 | INFO     | time since job start (60454s) is within the limit (172800.0s)
[2025-11-26 07:00:16] 2025-11-26 11:59:32,938 | INFO     | monitor loop #3511: job 0:6896242879 is in state 'finished'
[2025-11-26 07:00:16] 2025-11-26 11:59:32,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:00:16] 2025-11-26 11:59:33,105 | INFO     | time since job start (60456s) is within the limit (172800.0s)
[2025-11-26 07:00:16] 2025-11-26 11:59:35,131 | INFO     | time since job start (60458s) is within the limit (172800.0s)
[2025-11-26 07:00:16] 2025-11-26 11:59:35,465 | INFO     | monitor loop #3512: job 0:6896242879 is in state 'finished'
[2025-11-26 07:00:16] 2025-11-26 11:59:35,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:00:16] 2025-11-26 11:59:36,558 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 07:00:16] 2025-11-26 11:59:36,564 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3119.000250000001
[2025-11-26 07:00:16] 2025-11-26 11:59:36,578 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896242879/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:00:16] 2025-11-26 11:59:36,579 | INFO     | extracted standard info from prmon json
[2025-11-26 07:00:16] 2025-11-26 11:59:36,579 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:00:16] 2025-11-26 11:59:36,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:00:16] 2025-11-26 11:59:36,609 | INFO     | fitting pss+swap vs Time
[2025-11-26 07:00:16] 2025-11-26 11:59:36,612 | INFO     | sum of square deviations: 301833241296.7144
[2025-11-26 07:00:16] 2025-11-26 11:59:36,643 | INFO     | sum of deviations: 13053787964193.357
[2025-11-26 07:00:16] 2025-11-26 11:59:36,643 | INFO     | mean x: 1764128147.4157417
[2025-11-26 07:00:16] 2025-11-26 11:59:36,643 | INFO     | mean y: 3446483.4894046416
[2025-11-26 07:00:16] 2025-11-26 11:59:36,643 | INFO     | intersect: -76292175162.08118
[2025-11-26 07:00:16] 2025-11-26 11:59:36,644 | INFO     | chi2: 33.0335313263391
[2025-11-26 07:00:16] 2025-11-26 11:59:36,645 | INFO     | sum of square deviations: 297289016472.7422
[2025-11-26 07:00:16] 2025-11-26 11:59:36,749 | INFO     | sum of deviations: 13494686417452.111
[2025-11-26 07:00:16] 2025-11-26 11:59:36,749 | INFO     | mean x: 1764127994.9269776
[2025-11-26 07:00:16] 2025-11-26 11:59:36,749 | INFO     | mean y: 3461279.293103448
[2025-11-26 07:00:16] 2025-11-26 11:59:36,749 | INFO     | intersect: -80074687500.7876
[2025-11-26 07:00:16] 2025-11-26 11:59:36,750 | INFO     | chi2: 29.465656235248687
[2025-11-26 07:00:16] 2025-11-26 11:59:36,779 | INFO     | current chi2=29.465656235248687 (change=10.80076803125674 %)
[2025-11-26 07:00:16] 2025-11-26 11:59:36,780 | INFO     | right removable region: 985
[2025-11-26 07:00:16] 2025-11-26 11:59:36,781 | INFO     | sum of square deviations: 297287616579.8883
[2025-11-26 07:00:16] 2025-11-26 11:59:36,904 | INFO     | sum of deviations: 12700123732146.932
[2025-11-26 07:00:16] 2025-11-26 11:59:36,904 | INFO     | mean x: 1764128299.9279919
[2025-11-26 07:00:16] 2025-11-26 11:59:36,915 | INFO     | mean y: 3458338.379310345
[2025-11-26 07:00:16] 2025-11-26 11:59:36,916 | INFO     | intersect: -75360083359.7891
[2025-11-26 07:00:16] 2025-11-26 11:59:36,945 | INFO     | chi2: 30.852536628252736
[2025-11-26 07:00:16] 2025-11-26 11:59:36,945 | INFO     | current chi2=30.852536628252736 (change=6.602366173147713 %)
[2025-11-26 07:00:16] 2025-11-26 11:59:36,945 | INFO     | left removable region: 10
[2025-11-26 07:00:16] 2025-11-26 11:59:36,946 | INFO     | sum of square deviations: 287450039127.7192
[2025-11-26 07:00:16] 2025-11-26 11:59:37,072 | INFO     | sum of deviations: 13086428656228.027
[2025-11-26 07:00:16] 2025-11-26 11:59:37,072 | INFO     | mean x: 1764128269.454359
[2025-11-26 07:00:16] 2025-11-26 11:59:37,072 | INFO     | mean y: 3480970.1466666665
[2025-11-26 07:00:16] 2025-11-26 11:59:37,116 | INFO     | intersect: -80310088680.79327
[2025-11-26 07:00:16] 2025-11-26 11:59:37,117 | INFO     | chi2: 26.552974983879437
[2025-11-26 07:00:16] 2025-11-26 11:59:37,117 | INFO     | current memory leak: 45.53 B/s (using 975 data points, chi2=26.55)
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | could have reported an average CPU frequency of 3151 MHz (37 samples)
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | ..............................
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | . Timing measurements:
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | . get job = 0 s
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | . initial setup = 2 s
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | . payload setup = 8 s
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | . stage-in = 0 s
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | . payload execution = 60398 s
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | . stage-out = 10 s
[2025-11-26 07:00:16] 2025-11-26 11:59:37,148 | INFO     | . log creation = 2 s
[2025-11-26 07:00:16] 2025-11-26 11:59:37,149 | INFO     | ..............................
[2025-11-26 07:00:16] 2025-11-26 11:59:37,210 | INFO     | time since job start (60460s) is within the limit (172800.0s)
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | 
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | job summary report
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | --------------------------------------------------
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | PanDA job id: 6896242879
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | task id: 47556173
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | errors: (none)
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | pilot state: finished 
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | transexitcode: 0
[2025-11-26 07:00:16] 2025-11-26 11:59:37,522 | INFO     | exeerrorcode: 0
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | exeerrordiag: 
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | exitcode: 0
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | exitmsg: OK
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | cpuconsumptiontime: 204169 s
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | nevents: 1000
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | neventsw: 0
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | pid: 217574
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | pgrp: 217574
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | corecount: 8
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | event service: False
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | sizes: {0: 2284312, 6: 2284574, 11: 2284602, 60412: 2337732, 60413: 2337731, 60424: 2346781, 60426: 2346965, 60442: 2347211}
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | --------------------------------------------------
[2025-11-26 07:00:16] 2025-11-26 11:59:37,523 | INFO     | 
[2025-11-26 07:00:16] 2025-11-26 11:59:37,524 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 07:00:16] 2025-11-26 11:59:37,662 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,662 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,662 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,662 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,662 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,662 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,662 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,663 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:00:16] 2025-11-26 11:59:37,664 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,664 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:00:16] 2025-11-26 11:59:37,664 | INFO     | job 6896242879 has completed (purged errors)
[2025-11-26 07:00:16] 2025-11-26 11:59:37,664 | INFO     | overall cleanup function is called
[2025-11-26 07:00:16] 2025-11-26 11:59:38,756 | INFO     | --- collectZombieJob: --- 10, [217574]
[2025-11-26 07:00:16] 2025-11-26 11:59:38,757 | INFO     | zombie collector waiting for pid 217574
[2025-11-26 07:00:16] 2025-11-26 11:59:38,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:00:16] 2025-11-26 11:59:38,757 | INFO     | collected zombie processes
[2025-11-26 07:00:16] 2025-11-26 11:59:38,757 | INFO     | will attempt to kill all subprocesses of pid=217574
[2025-11-26 07:00:16] 2025-11-26 11:59:41,305 | INFO     | process IDs to be killed: [217574] (in reverse order)
[2025-11-26 07:00:16] 2025-11-26 11:59:41,607 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:00:16] 2025-11-26 11:59:41,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:00:16] 2025-11-26 11:59:41,647 | INFO     | did not find any defunct processes belonging to 217574
[2025-11-26 07:00:16] 2025-11-26 11:59:41,675 | INFO     | did not find any defunct processes belonging to 217574
[2025-11-26 07:00:16] 2025-11-26 11:59:41,677 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:00:16] 2025-11-26 11:59:41,677 | INFO     | ready for new job
[2025-11-26 07:00:16] 2025-11-26 11:59:41,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:00:16] 2025-11-26 11:59:41,700 | INFO     | ***************************************
[2025-11-26 07:00:16] 2025-11-26 11:59:41,701 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:00:16] 2025-11-26 11:59:41,701 | INFO     | ***************************************
[2025-11-26 07:00:16] 2025-11-26 11:59:41,701 | INFO     | 
[2025-11-26 07:00:16] 2025-11-26 11:59:41,718 | INFO     | architecture information:
[2025-11-26 07:00:16] 2025-11-26 11:59:41,722 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:00:16] 2025-11-26 11:59:41,779 | INFO     | cat /etc/os-release:
[2025-11-26 07:00:16] NAME="CentOS Linux"
[2025-11-26 07:00:16] VERSION="7 (Core)"
[2025-11-26 07:00:16] ID="centos"
[2025-11-26 07:00:16] ID_LIKE="rhel fedora"
[2025-11-26 07:00:16] VERSION_ID="7"
[2025-11-26 07:00:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:00:16] ANSI_COLOR="0;31"
[2025-11-26 07:00:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:00:16] HOME_URL="https://www.centos.org/"
[2025-11-26 07:00:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:00:16] 
[2025-11-26 07:00:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:00:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:00:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:00:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:00:16] 
[2025-11-26 07:00:16] 2025-11-26 11:59:41,779 | INFO     | ***************************************
[2025-11-26 07:00:16] 2025-11-26 11:59:42,284 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 07:00:16] 2025-11-26 11:59:42,524 | INFO     | sufficient remaining disk space (64619544576 B)
[2025-11-26 07:00:16] 2025-11-26 11:59:42,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:00:16] 2025-11-26 11:59:42,524 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:00:16] 2025-11-26 11:59:42,524 | INFO     | update_server=False
[2025-11-26 07:00:16] 2025-11-26 11:59:42,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:00:16] 2025-11-26 11:59:42,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:00:16] 2025-11-26 11:59:42,528 | INFO     | aborting loop
[2025-11-26 07:00:16] 2025-11-26 11:59:42,579 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:00:16] 2025-11-26 11:59:42,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:00:16] 2025-11-26 11:59:43,056 | INFO     | all data control threads have been joined
[2025-11-26 07:00:16] 2025-11-26 11:59:43,530 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:43,534 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:43,607 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:43,649 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:43,891 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:43,891 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:43,996 | INFO     | all payload control threads have been joined
[2025-11-26 07:00:16] 2025-11-26 11:59:44,062 | INFO     | [data] control thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:44,104 | INFO     | all job control threads have been joined
[2025-11-26 07:00:16] 2025-11-26 11:59:44,216 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:44,457 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:44,512 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:00:16] 2025-11-26 11:59:44,649 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:44,970 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:45,002 | INFO     | [payload] control thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:45,006 | INFO     | [job] validate thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:45,007 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:45,110 | INFO     | [job] control thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:45,205 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:00:16] 2025-11-26 11:59:49,234 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:00:16] 2025-11-26 11:59:50,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140018830751552)>', '<ExcThread(monitor, started 140018349766400)>']
[2025-11-26 07:00:16] 2025-11-26 11:59:55,361 | INFO     | all workflow threads have been joined
[2025-11-26 07:00:16] 2025-11-26 11:59:55,362 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:00:16] 2025-11-26 11:59:55,362 | INFO     | traces error code: 0
[2025-11-26 07:00:16] 2025-11-26 11:59:55,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:00:16] 2025-11-26 12:00:15,211 | INFO     | PID=210614 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 07:00:16] 2025-11-26 12:00:15,220 | INFO     | .. there are 49 such processes running
[2025-11-26 07:00:16] 2025-11-26 12:00:15,221 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:00:16] 2025-11-26 12:00:15,221 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:00:16] 2025-11-26 12:00:15,221 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:00:16] 2025-11-26 12:00:15,221 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:00:16] 2025-11-26 12:00:15,221 | INFO     | [monitor] control thread has ended
[2025-11-26 07:00:16] 2025-11-26 12:00:15,675 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:00:16] 2025-11-26 12:00:15,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:00:16] 2025-11-26 12:00:15,730 [wrapper] pilotpid: 210614
[2025-11-26 07:00:16] 2025-11-26 12:00:15,762 [wrapper] Pilot exit status: 0
[2025-11-26 07:00:16] 2025-11-26 12:00:15,873 [wrapper] pandaids: 6896242879
[2025-11-26 07:00:16] 2025-11-26 12:00:16,079 [wrapper] cleanup supervisor_pilot  443901 210615
[2025-11-26 07:00:16] 2025-11-26 12:00:16,097 [wrapper] Test setup, not cleaning
[2025-11-26 07:00:16] 2025-11-26 12:00:16,128 [wrapper] apfmon messages muted
[2025-11-26 07:00:16] 2025-11-26 12:00:16,140 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:00:16] 2025-11-26 12:00:16,143 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:00:16]  *** Error codes and diagnostics ***
[2025-11-26 07:00:16]     "exeErrorCode": 0,
[2025-11-26 07:00:16]     "exeErrorDiag": "",
[2025-11-26 07:00:16]     "pilotErrorCode": 0,
[2025-11-26 07:00:16]     "pilotErrorDiag": "",
[2025-11-26 07:00:16]  *** Listing of results directory ***
[2025-11-26 07:00:16] total 1324740
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 15:01 pilot3.tar.gz
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 15:16 queuedata.json
[2025-11-26 07:00:16] -rwx------. 1 boincer umatlas     36292 Nov 24 15:19 runpilot2-wrapper.sh
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas       100 Nov 25 14:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:00:16] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 14:11 run_atlas
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas       105 Nov 25 14:11 job.xml
[2025-11-26 07:00:16] -rw-r--r--. 2 boincer umatlas 409154770 Nov 25 14:11 EVNT.47483658._003053.pool.root.1
[2025-11-26 07:00:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 14:11 start_atlas.sh
[2025-11-26 07:00:16] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 14:11 shared
[2025-11-26 07:00:16] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 14:11 input.tar.gz
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas         0 Nov 25 14:11 boinc_lockfile
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 14:11 pandaJob.out
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas        57 Nov 25 14:11 setup.sh.local
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas    991543 Nov 25 14:11 agis_schedconf.cvmfs.json
[2025-11-26 07:00:16] drwx------. 5 boincer umatlas      4096 Nov 25 14:11 pilot3
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas       533 Nov 26 06:47 boinc_task_state.xml
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas      6946 Nov 26 06:56 init_data.xml
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas 924270398 Nov 26 06:58 HITS.47556173._000358.pool.root.1
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas      1072 Nov 26 06:59 memory_monitor_summary.json
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas   1516240 Nov 26 06:59 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas   2106473 Nov 26 06:59 log.47556173._000358.job.log.tgz.1
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas      8637 Nov 26 06:59 heartbeat.json
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 07:00 boinc_mmap_file
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas        29 Nov 26 07:00 wrapper_checkpoint.txt
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas       822 Nov 26 07:00 pilotlog.txt
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas        95 Nov 26 07:00 pilot_heartbeat.json
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas   7484574 Nov 26 07:00 log.47556173._000358.job.log.1
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas       353 Nov 26 07:00 output.list
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas       620 Nov 26 07:00 runtime_log
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas   9615360 Nov 26 07:00 result.tar.gz
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 07:00 runtime_log.err
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas       664 Nov 26 07:00 jyCLDmBDsh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNCJKDmCWAW8n.diag
[2025-11-26 07:00:16] -rw-r--r--. 1 boincer umatlas     21844 Nov 26 07:00 stderr.txt
[2025-11-26 07:00:16] HITS file was successfully produced:
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas 924270398 Nov 26 06:58 shared/HITS.pool.root.1
[2025-11-26 07:00:16]  *** Contents of shared directory: ***
[2025-11-26 07:00:16] total 1312172
[2025-11-26 07:00:16] -rw-r--r--. 2 boincer umatlas 409154770 Nov 25 14:11 ATLAS.root_0
[2025-11-26 07:00:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 14:11 start_atlas.sh
[2025-11-26 07:00:16] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 14:11 input.tar.gz
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas 924270398 Nov 26 06:58 HITS.pool.root.1
[2025-11-26 07:00:16] -rw-------. 1 boincer umatlas   9615360 Nov 26 07:00 result.tar.gz
07:00:17 (206706): run_atlas exited; CPU time 205166.898613
07:00:17 (206706): called boinc_finish(0)

</stderr_txt>
]]>

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