Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:44:12 (1288126): wrapper (7.7.26015): starting
05:44:12 (1288126): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 05:44:12] Arguments: --nthreads 3
[2025-11-27 05:44:12] Threads: 3
[2025-11-27 05:44:12] Checking for CVMFS
[2025-11-27 05:44:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:44:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:44:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:44:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:44:13] 2.13.3.0 1129478 1431 57596 153334 3 81 41545075 52428801 0 130560 0 522553 99.979 52830 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-11-27 05:44:13] CVMFS is ok
[2025-11-27 05:44:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:44:13] Checking for apptainer binary...
[2025-11-27 05:44:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:44:13] Running /usr/bin/apptainer --version
[2025-11-27 05:44:13] apptainer version 1.4.4-1.el9
[2025-11-27 05:44:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:44:13] testio004
[2025-11-27 05:44:13] apptainer works
[2025-11-27 05:44:13] Set ATHENA_PROC_NUMBER=3
[2025-11-27 05:44:13] Set ATHENA_CORE_NUMBER=3
[2025-11-27 05:44:13] Starting ATLAS job with PandaID=6891105203
[2025-11-27 05:44:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:20:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:20:40] 2025-11-27 08:20:03,250 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:20:40] 2025-11-27 08:20:03,255 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:20:40] 2025-11-27 08:20:03,256 | INFO     | sum of square deviations: 99230477183.31003
[2025-11-27 17:20:40] 2025-11-27 08:20:03,260 | INFO     | sum of deviations: 361803987237.802
[2025-11-27 17:20:40] 2025-11-27 08:20:03,260 | INFO     | mean x: 1764210716.5497077
[2025-11-27 17:20:40] 2025-11-27 08:20:03,260 | INFO     | mean y: 2189469.5058479533
[2025-11-27 17:20:40] 2025-11-27 08:20:03,261 | INFO     | intersect: -6430294679.453801
[2025-11-27 17:20:40] 2025-11-27 08:20:03,261 | INFO     | chi2: 6.397568304889626
[2025-11-27 17:20:40] 2025-11-27 08:20:03,261 | INFO     | sum of square deviations: 97070242398.2979
[2025-11-27 17:20:40] 2025-11-27 08:20:03,266 | INFO     | sum of deviations: 507905521594.7807
[2025-11-27 17:20:40] 2025-11-27 08:20:03,266 | INFO     | mean x: 1764210564.0500736
[2025-11-27 17:20:40] 2025-11-27 08:20:03,266 | INFO     | mean y: 2199786.388807069
[2025-11-27 17:20:40] 2025-11-27 08:20:03,266 | INFO     | intersect: -9228768063.265877
[2025-11-27 17:20:40] 2025-11-27 08:20:03,266 | INFO     | chi2: 4.225092711054482
[2025-11-27 17:20:40] 2025-11-27 08:20:03,266 | INFO     | current chi2=4.225092711054482 (change=33.95783351269158 %)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,267 | INFO     | sum of square deviations: 94941589600.78467
[2025-11-27 17:20:40] 2025-11-27 08:20:03,271 | INFO     | sum of deviations: 545922970286.6171
[2025-11-27 17:20:40] 2025-11-27 08:20:03,271 | INFO     | mean x: 1764210411.550445
[2025-11-27 17:20:40] 2025-11-27 08:20:03,271 | INFO     | mean y: 2202492.275964392
[2025-11-27 17:20:40] 2025-11-27 08:20:03,271 | INFO     | intersect: -10142171455.26361
[2025-11-27 17:20:40] 2025-11-27 08:20:03,272 | INFO     | chi2: 3.5001765758063783
[2025-11-27 17:20:40] 2025-11-27 08:20:03,272 | INFO     | current chi2=3.5001765758063783 (change=17.157401856566175 %)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,272 | INFO     | right removable region: 673
[2025-11-27 17:20:40] 2025-11-27 08:20:03,272 | INFO     | sum of square deviations: 97070221658.2979
[2025-11-27 17:20:40] 2025-11-27 08:20:03,276 | INFO     | sum of deviations: 208975317435.92386
[2025-11-27 17:20:40] 2025-11-27 08:20:03,277 | INFO     | mean x: 1764210869.0500736
[2025-11-27 17:20:40] 2025-11-27 08:20:03,277 | INFO     | mean y: 2200249.5316642122
[2025-11-27 17:20:40] 2025-11-27 08:20:03,277 | INFO     | intersect: -3795839150.042845
[2025-11-27 17:20:40] 2025-11-27 08:20:03,277 | INFO     | chi2: 4.047148156087544
[2025-11-27 17:20:40] 2025-11-27 08:20:03,277 | INFO     | current chi2=4.047148156087544 (change=36.739273998929704 %)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,277 | INFO     | sum of square deviations: 94941548120.78467
[2025-11-27 17:20:40] 2025-11-27 08:20:03,282 | INFO     | sum of deviations: 105094411262.5892
[2025-11-27 17:20:40] 2025-11-27 08:20:03,282 | INFO     | mean x: 1764211021.550445
[2025-11-27 17:20:40] 2025-11-27 08:20:03,282 | INFO     | mean y: 2207685.203264095
[2025-11-27 17:20:40] 2025-11-27 08:20:03,282 | INFO     | intersect: -1950664606.461267
[2025-11-27 17:20:40] 2025-11-27 08:20:03,282 | INFO     | chi2: 3.0061216844139897
[2025-11-27 17:20:40] 2025-11-27 08:20:03,283 | INFO     | current chi2=3.0061216844139897 (change=25.722470033811028 %)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,283 | INFO     | sum of square deviations: 92844224008.27202
[2025-11-27 17:20:40] 2025-11-27 08:20:03,287 | INFO     | sum of deviations: 100899296401.25278
[2025-11-27 17:20:40] 2025-11-27 08:20:03,287 | INFO     | mean x: 1764211174.050822
[2025-11-27 17:20:40] 2025-11-27 08:20:03,287 | INFO     | mean y: 2207988.9043348283
[2025-11-27 17:20:40] 2025-11-27 08:20:03,287 | INFO     | intersect: -1915064389.2793238
[2025-11-27 17:20:40] 2025-11-27 08:20:03,288 | INFO     | chi2: 3.0044186386921456
[2025-11-27 17:20:40] 2025-11-27 08:20:03,288 | INFO     | current chi2=3.0044186386921456 (change=0.056652587640546176 %)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,288 | INFO     | left removable region: 30
[2025-11-27 17:20:40] 2025-11-27 08:20:03,288 | INFO     | sum of square deviations: 82434539604.20213
[2025-11-27 17:20:40] 2025-11-27 08:20:03,292 | INFO     | sum of deviations: 251797280943.61743
[2025-11-27 17:20:40] 2025-11-27 08:20:03,292 | INFO     | mean x: 1764211296.0528772
[2025-11-27 17:20:40] 2025-11-27 08:20:03,292 | INFO     | mean y: 2224018.4230171074
[2025-11-27 17:20:40] 2025-11-27 08:20:03,292 | INFO     | intersect: -5386580352.76662
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | chi2: 0.05227117837824569
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | current memory leak: 3.05 B/s (using 643 data points, chi2=0.05)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | could have reported an average CPU frequency of 3609 MHz (26 samples)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | ..............................
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | . Timing measurements:
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | . get job = 0 s
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | . initial setup = 5 s
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | . payload setup = 4 s
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | . stage-in = 0 s
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | . payload execution = 41703 s
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | . stage-out = 4 s
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | . log creation = 0 s
[2025-11-27 17:20:40] 2025-11-27 08:20:03,293 | INFO     | ..............................
[2025-11-27 17:20:40] 2025-11-27 08:20:03,329 | INFO     | 
[2025-11-27 17:20:40] 2025-11-27 08:20:03,329 | INFO     | job summary report
[2025-11-27 17:20:40] 2025-11-27 08:20:03,329 | INFO     | --------------------------------------------------
[2025-11-27 17:20:40] 2025-11-27 08:20:03,329 | INFO     | PanDA job id: 6891105203
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | task id: 47483661
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | errors: (none)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | pilot state: finished 
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | transexitcode: 0
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | exeerrorcode: 0
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | exeerrordiag: 
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | exitcode: 0
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | exitmsg: OK
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | cpuconsumptiontime: 116316 s
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | nevents: 1000
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | neventsw: 0
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | pid: 1298337
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | pgrp: 1298337
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | corecount: 3
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | event service: False
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | sizes: {0: 2284304, 2: 2284566, 10: 2284594, 41711: 2328591, 41712: 2328590, 41716: 2337640, 41719: 2337824, 41726: 2338070}
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | --------------------------------------------------
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | 
[2025-11-27 17:20:40] 2025-11-27 08:20:03,330 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-27 17:20:40] 2025-11-27 08:20:03,341 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,342 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:20:40] 2025-11-27 08:20:03,343 | INFO     | job 6891105203 has completed (purged errors)
[2025-11-27 17:20:40] 2025-11-27 08:20:03,343 | INFO     | overall cleanup function is called
[2025-11-27 17:20:40] 2025-11-27 08:20:04,350 | INFO     | --- collectZombieJob: --- 10, [1298337]
[2025-11-27 17:20:40] 2025-11-27 08:20:04,350 | INFO     | zombie collector waiting for pid 1298337
[2025-11-27 17:20:40] 2025-11-27 08:20:04,351 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:20:40] 2025-11-27 08:20:04,351 | INFO     | collected zombie processes
[2025-11-27 17:20:40] 2025-11-27 08:20:04,351 | INFO     | will attempt to kill all subprocesses of pid=1298337
[2025-11-27 17:20:40] 2025-11-27 08:20:04,381 | INFO     | process IDs to be killed: [1298337] (in reverse order)
[2025-11-27 17:20:40] 2025-11-27 08:20:04,400 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:20:40] 2025-11-27 08:20:04,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:20:40] 2025-11-27 08:20:04,401 | INFO     | did not find any defunct processes belonging to 1298337
[2025-11-27 17:20:40] 2025-11-27 08:20:04,402 | INFO     | did not find any defunct processes belonging to 1298337
[2025-11-27 17:20:40] 2025-11-27 08:20:04,403 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:20:40] 2025-11-27 08:20:04,403 | INFO     | ready for new job
[2025-11-27 17:20:40] 2025-11-27 08:20:04,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:20:40] 2025-11-27 08:20:04,405 | INFO     | ***************************************
[2025-11-27 17:20:40] 2025-11-27 08:20:04,405 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:20:40] 2025-11-27 08:20:04,405 | INFO     | ***************************************
[2025-11-27 17:20:40] 2025-11-27 08:20:04,405 | INFO     | 
[2025-11-27 17:20:40] 2025-11-27 08:20:04,405 | INFO     | architecture information:
[2025-11-27 17:20:40] 2025-11-27 08:20:04,405 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:20:40] 2025-11-27 08:20:04,412 | INFO     | cat /etc/os-release:
[2025-11-27 17:20:40] NAME="CentOS Linux"
[2025-11-27 17:20:40] VERSION="7 (Core)"
[2025-11-27 17:20:40] ID="centos"
[2025-11-27 17:20:40] ID_LIKE="rhel fedora"
[2025-11-27 17:20:40] VERSION_ID="7"
[2025-11-27 17:20:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:20:40] ANSI_COLOR="0;31"
[2025-11-27 17:20:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:20:40] HOME_URL="https://www.centos.org/"
[2025-11-27 17:20:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:20:40] 
[2025-11-27 17:20:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:20:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:20:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:20:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:20:40] 
[2025-11-27 17:20:40] 2025-11-27 08:20:04,412 | INFO     | ***************************************
[2025-11-27 17:20:40] 2025-11-27 08:20:04,915 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-27 17:20:40] 2025-11-27 08:20:04,923 | INFO     | sufficient remaining disk space (323261300736 B)
[2025-11-27 17:20:40] 2025-11-27 08:20:04,924 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:20:40] 2025-11-27 08:20:04,924 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:20:40] 2025-11-27 08:20:04,924 | INFO     | update_server=False
[2025-11-27 17:20:40] 2025-11-27 08:20:04,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:20:40] 2025-11-27 08:20:04,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:20:40] 2025-11-27 08:20:04,924 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:20:40] 2025-11-27 08:20:05,162 | INFO     | all data control threads have been joined
[2025-11-27 17:20:40] 2025-11-27 08:20:05,324 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 17:20:40] 2025-11-27 08:20:05,324 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 17:20:40] 2025-11-27 08:20:05,325 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:20:40] 2025-11-27 08:20:05,325 | INFO     | will abort loop
[2025-11-27 17:20:40] 2025-11-27 08:20:05,554 | INFO     | all payload control threads have been joined
[2025-11-27 17:20:40] 2025-11-27 08:20:05,662 | INFO     | all job control threads have been joined
[2025-11-27 17:20:40] 2025-11-27 08:20:05,924 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:05,929 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:05,957 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:05,982 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,029 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,082 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,167 | INFO     | [data] control thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,329 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,557 | INFO     | [payload] control thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,667 | INFO     | [job] control thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,751 | INFO     | [job] validate thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,930 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,953 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:06,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:20:40] 2025-11-27 08:20:07,397 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:07,403 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:10,969 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:20:40] 2025-11-27 08:20:34,421 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:20:40] 2025-11-27 08:20:35,195 | INFO     | PID=1291794 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:20:40] 2025-11-27 08:20:35,195 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:20:40] 2025-11-27 08:20:35,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:20:40] 2025-11-27 08:20:35,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:20:40] 2025-11-27 08:20:35,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140008743569216)>', '<ExcThread(monitor, started 140007729780480)>']
[2025-11-27 17:20:40] 2025-11-27 08:20:36,199 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:20:40] 2025-11-27 08:20:36,199 | INFO     | [monitor] control thread has ended
[2025-11-27 17:20:40] 2025-11-27 08:20:40,385 | INFO     | all workflow threads have been joined
[2025-11-27 17:20:40] 2025-11-27 08:20:40,385 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:20:40] 2025-11-27 08:20:40,385 | INFO     | traces error code: 0
[2025-11-27 17:20:40] 2025-11-27 08:20:40,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:20:40] 2025-11-27 08:20:40,441 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:20:40] 2025-11-27 08:20:40,443 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:20:40] 2025-11-27 08:20:40,445 [wrapper] pilotpid: 1291794
[2025-11-27 17:20:40] 2025-11-27 08:20:40,446 [wrapper] Pilot exit status: 0
[2025-11-27 17:20:40] 2025-11-27 08:20:40,452 [wrapper] pandaids: 6891105203
[2025-11-27 17:20:40] 2025-11-27 08:20:40,464 [wrapper] cleanup supervisor_pilot 1362125 1291795
[2025-11-27 17:20:40] 2025-11-27 08:20:40,465 [wrapper] Test setup, not cleaning
[2025-11-27 17:20:40] 2025-11-27 08:20:40,467 [wrapper] apfmon messages muted
[2025-11-27 17:20:40] 2025-11-27 08:20:40,468 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:20:40] 2025-11-27 08:20:40,470 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:20:40]  *** Error codes and diagnostics ***
[2025-11-27 17:20:40]     "exeErrorCode": 0,
[2025-11-27 17:20:40]     "exeErrorDiag": "",
[2025-11-27 17:20:40]     "pilotErrorCode": 0,
[2025-11-27 17:20:40]     "pilotErrorDiag": "",
[2025-11-27 17:20:40]  *** Listing of results directory ***
[2025-11-27 17:20:40] total 1317432
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc    576529 Nov 18 15:54 pilot3.tar.gz
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc      5112 Nov 18 15:58 queuedata.json
[2025-11-27 17:20:40] -rwx------. 1 boinc boinc     36292 Nov 18 15:59 runpilot2-wrapper.sh
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc       100 Nov 27 05:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:20:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 05:44 run_atlas
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc       105 Nov 27 05:44 job.xml
[2025-11-27 17:20:40] -rw-r--r--. 2 boinc boinc 411318937 Nov 27 05:44 EVNT.47483658._000236.pool.root.1
[2025-11-27 17:20:40] -rw-r--r--. 2 boinc boinc     15120 Nov 27 05:44 start_atlas.sh
[2025-11-27 17:20:40] drwxrwx--x. 2 boinc boinc        68 Nov 27 05:44 shared
[2025-11-27 17:20:40] -rw-r--r--. 2 boinc boinc    590103 Nov 27 05:44 input.tar.gz
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc         0 Nov 27 05:44 boinc_lockfile
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc      2773 Nov 27 05:44 pandaJob.out
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc    991538 Nov 27 05:44 agis_schedconf.cvmfs.json
[2025-11-27 17:20:40] drwx------. 5 boinc boinc      4096 Nov 27 05:44 pilot3
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc      9323 Nov 27 06:55 init_data.xml
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc       532 Nov 27 17:13 boinc_task_state.xml
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc 919817726 Nov 27 17:19 HITS.47483661._002057.pool.root.1
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc        95 Nov 27 17:19 pilot_heartbeat.json
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc      1038 Nov 27 17:19 memory_monitor_summary.json
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc   1516240 Nov 27 17:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc   1324129 Nov 27 17:19 log.47483661._002057.job.log.tgz.1
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc      8580 Nov 27 17:20 heartbeat.json
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc        29 Nov 27 17:20 wrapper_checkpoint.txt
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc      8192 Nov 27 17:20 boinc_mmap_file
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc      4935 Nov 27 17:20 pilotlog.txt
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc   5680745 Nov 27 17:20 log.47483661._002057.job.log.1
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc       353 Nov 27 17:20 output.list
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc       620 Nov 27 17:20 runtime_log
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc   7024640 Nov 27 17:20 result.tar.gz
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc      8662 Nov 27 17:20 runtime_log.err
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc       653 Nov 27 17:20 fUfLDmfrUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKOKODmH9bTQm.diag
[2025-11-27 17:20:40] -rw-r--r--. 1 boinc boinc     20830 Nov 27 17:20 stderr.txt
[2025-11-27 17:20:40] HITS file was successfully produced:
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc 919817726 Nov 27 17:19 shared/HITS.pool.root.1
[2025-11-27 17:20:40]  *** Contents of shared directory: ***
[2025-11-27 17:20:40] total 1307396
[2025-11-27 17:20:40] -rw-r--r--. 2 boinc boinc 411318937 Nov 27 05:44 ATLAS.root_0
[2025-11-27 17:20:40] -rw-r--r--. 2 boinc boinc     15120 Nov 27 05:44 start_atlas.sh
[2025-11-27 17:20:40] -rw-r--r--. 2 boinc boinc    590103 Nov 27 05:44 input.tar.gz
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc 919817726 Nov 27 17:19 HITS.pool.root.1
[2025-11-27 17:20:40] -rw-------. 1 boinc boinc   7024640 Nov 27 17:20 result.tar.gz
17:20:42 (1288126): run_atlas exited; CPU time 116359.830338
17:20:42 (1288126): called boinc_finish(0)

</stderr_txt>
]]>

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