Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:48:38 (345886): wrapper (7.7.26015): starting
15:48:38 (345886): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 15:48:38] Arguments: --nthreads 8
[2025-11-25 15:48:38] Threads: 8
[2025-11-25 15:48:38] Checking for CVMFS
[2025-11-25 15:48:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:48:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:48:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:48:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:48:39] 2.13.2.0 6699 34897 239908 153297 2 329 24111583 40960001 24408 16776704 0 88786289 99.615 89600689 38006 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 15:48:39] CVMFS is ok
[2025-11-25 15:48:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:48:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:48:39] Further information can be found at the LHC@home message board.
[2025-11-25 15:48:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:48:39] Checking for apptainer binary...
[2025-11-25 15:48:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:48:39] Running /usr/bin/apptainer --version
[2025-11-25 15:48:39] apptainer version 1.4.4-1.el9
[2025-11-25 15:48:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:48:39] c-212-4.aglt2.org
[2025-11-25 15:48:39] apptainer works
[2025-11-25 15:48:39] Set ATHENA_PROC_NUMBER=8
[2025-11-25 15:48:39] Set ATHENA_CORE_NUMBER=8
[2025-11-25 15:48:39] Starting ATLAS job with PandaID=6891105196
[2025-11-25 15:48:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:57:17]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:57:17] 2025-11-26 15:56:30,146 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 10:57:17] 2025-11-26 15:56:30,835 | INFO     | PID=349782 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:57:17] 2025-11-26 15:56:30,836 | INFO     | .. there are 25 such processes running
[2025-11-26 10:57:17] 2025-11-26 15:56:31,836 | INFO     | time since job start (68852s) is within the limit (172800.0s)
[2025-11-26 10:57:17] 2025-11-26 15:56:32,085 | INFO     | monitor loop #4126: job 0:6891105196 is in state 'finished'
[2025-11-26 10:57:17] 2025-11-26 15:56:32,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:57:17] 2025-11-26 15:56:33,844 | INFO     | time since job start (68854s) is within the limit (172800.0s)
[2025-11-26 10:57:17] 2025-11-26 15:56:34,588 | INFO     | monitor loop #4127: job 0:6891105196 is in state 'finished'
[2025-11-26 10:57:17] 2025-11-26 15:56:34,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:57:17] 2025-11-26 15:56:35,850 | INFO     | time since job start (68856s) is within the limit (172800.0s)
[2025-11-26 10:57:17] 2025-11-26 15:56:37,092 | INFO     | monitor loop #4128: job 0:6891105196 is in state 'finished'
[2025-11-26 10:57:17] 2025-11-26 15:56:37,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:57:17] 2025-11-26 15:56:37,861 | INFO     | time since job start (68858s) is within the limit (172800.0s)
[2025-11-26 10:57:17] 2025-11-26 15:56:39,599 | INFO     | monitor loop #4129: job 0:6891105196 is in state 'finished'
[2025-11-26 10:57:17] 2025-11-26 15:56:39,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:57:17] 2025-11-26 15:56:39,867 | INFO     | time since job start (68860s) is within the limit (172800.0s)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,682 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 10:57:17] 2025-11-26 15:56:41,688 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3127.409114583333
[2025-11-26 10:57:17] 2025-11-26 15:56:41,701 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891105196/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,701 | INFO     | extracted standard info from prmon json
[2025-11-26 10:57:17] 2025-11-26 15:56:41,702 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:57:17] 2025-11-26 15:56:41,702 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:57:17] 2025-11-26 15:56:41,715 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:57:17] 2025-11-26 15:56:41,716 | INFO     | sum of square deviations: 445043224018.53125
[2025-11-26 10:57:17] 2025-11-26 15:56:41,737 | INFO     | sum of deviations: 19487417969149.266
[2025-11-26 10:57:17] 2025-11-26 15:56:41,737 | INFO     | mean x: 1764138147.72961
[2025-11-26 10:57:17] 2025-11-26 15:56:41,738 | INFO     | mean y: 3392646.925531915
[2025-11-26 10:57:17] 2025-11-26 15:56:41,738 | INFO     | intersect: -77244154523.22575
[2025-11-26 10:57:17] 2025-11-26 15:56:41,739 | INFO     | chi2: 90.75111243007696
[2025-11-26 10:57:17] 2025-11-26 15:56:41,740 | INFO     | sum of square deviations: 439151529678.87445
[2025-11-26 10:57:17] 2025-11-26 15:56:41,762 | INFO     | sum of deviations: 19914980710084.234
[2025-11-26 10:57:17] 2025-11-26 15:56:41,762 | INFO     | mean x: 1764137995.2333035
[2025-11-26 10:57:17] 2025-11-26 15:56:41,762 | INFO     | mean y: 3403710.1861086376
[2025-11-26 10:57:17] 2025-11-26 15:56:41,762 | INFO     | intersect: -79998080448.79753
[2025-11-26 10:57:17] 2025-11-26 15:56:41,763 | INFO     | chi2: 87.58714590160365
[2025-11-26 10:57:17] 2025-11-26 15:56:41,763 | INFO     | current chi2=87.58714590160365 (change=3.4864217569907168 %)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,764 | INFO     | right removable region: 1122
[2025-11-26 10:57:17] 2025-11-26 15:56:41,765 | INFO     | sum of square deviations: 439150820735.933
[2025-11-26 10:57:17] 2025-11-26 15:56:41,790 | INFO     | sum of deviations: 18992667434594.277
[2025-11-26 10:57:17] 2025-11-26 15:56:41,790 | INFO     | mean x: 1764138300.2350845
[2025-11-26 10:57:17] 2025-11-26 15:56:41,790 | INFO     | mean y: 3405449.1807658058
[2025-11-26 10:57:17] 2025-11-26 15:56:41,790 | INFO     | intersect: -76293143396.71742
[2025-11-26 10:57:17] 2025-11-26 15:56:41,791 | INFO     | chi2: 87.11292894769961
[2025-11-26 10:57:17] 2025-11-26 15:56:41,792 | INFO     | current chi2=87.11292894769961 (change=4.0089684687672955 %)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,792 | INFO     | left removable region: 10
[2025-11-26 10:57:17] 2025-11-26 15:56:41,793 | INFO     | sum of square deviations: 426371947372.9783
[2025-11-26 10:57:17] 2025-11-26 15:56:41,813 | INFO     | sum of deviations: 18921756583139.824
[2025-11-26 10:57:17] 2025-11-26 15:56:41,813 | INFO     | mean x: 1764138269.7455037
[2025-11-26 10:57:17] 2025-11-26 15:56:41,814 | INFO     | mean y: 3428042.4163669064
[2025-11-26 10:57:17] 2025-11-26 15:56:41,814 | INFO     | intersect: -78286419882.1364
[2025-11-26 10:57:17] 2025-11-26 15:56:41,814 | INFO     | chi2: 80.88817979346321
[2025-11-26 10:57:17] 2025-11-26 15:56:41,815 | INFO     | current memory leak: 44.38 B/s (using 1112 data points, chi2=80.89)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | could have reported an average CPU frequency of 3136 MHz (41 samples)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | ..............................
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | . Timing measurements:
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | . get job = 0 s
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | . initial setup = 3 s
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | . payload setup = 8 s
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | . stage-in = 0 s
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | . payload execution = 68814 s
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | . stage-out = 3 s
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | . log creation = 0 s
[2025-11-26 10:57:17] 2025-11-26 15:56:41,816 | INFO     | ..............................
[2025-11-26 10:57:17] 2025-11-26 15:56:41,881 | INFO     | 
[2025-11-26 10:57:17] 2025-11-26 15:56:41,881 | INFO     | job summary report
[2025-11-26 10:57:17] 2025-11-26 15:56:41,881 | INFO     | --------------------------------------------------
[2025-11-26 10:57:17] 2025-11-26 15:56:41,881 | INFO     | PanDA job id: 6891105196
[2025-11-26 10:57:17] 2025-11-26 15:56:41,881 | INFO     | task id: 47483661
[2025-11-26 10:57:17] 2025-11-26 15:56:41,881 | INFO     | errors: (none)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,881 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:57:17] 2025-11-26 15:56:41,881 | INFO     | pilot state: finished 
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | transexitcode: 0
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | exeerrorcode: 0
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | exeerrordiag: 
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | exitcode: 0
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | exitmsg: OK
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | cpuconsumptiontime: 201297 s
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | nevents: 1000
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | neventsw: 0
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | pid: 356625
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | pgrp: 356625
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | corecount: 8
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | event service: False
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | sizes: {0: 2284077, 1: 2284332, 8: 2284594, 12: 2284622, 68826: 2341354, 68827: 2341353, 68830: 2350531, 68832: 2350587, 68845: 2350929}
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | --------------------------------------------------
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | 
[2025-11-26 10:57:17] 2025-11-26 15:56:41,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 10:57:17] 2025-11-26 15:56:41,888 | INFO     | time since job start (68862s) is within the limit (172800.0s)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,904 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,904 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:57:17] 2025-11-26 15:56:41,904 | INFO     | job 6891105196 has completed (purged errors)
[2025-11-26 10:57:17] 2025-11-26 15:56:41,904 | INFO     | overall cleanup function is called
[2025-11-26 10:57:17] 2025-11-26 15:56:42,923 | INFO     | --- collectZombieJob: --- 10, [356625]
[2025-11-26 10:57:17] 2025-11-26 15:56:42,923 | INFO     | zombie collector waiting for pid 356625
[2025-11-26 10:57:17] 2025-11-26 15:56:42,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:57:17] 2025-11-26 15:56:42,925 | INFO     | collected zombie processes
[2025-11-26 10:57:17] 2025-11-26 15:56:42,925 | INFO     | will attempt to kill all subprocesses of pid=356625
[2025-11-26 10:57:17] 2025-11-26 15:56:43,344 | INFO     | process IDs to be killed: [356625] (in reverse order)
[2025-11-26 10:57:17] 2025-11-26 15:56:43,496 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:57:17] 2025-11-26 15:56:43,496 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:57:17] 2025-11-26 15:56:43,511 | INFO     | did not find any defunct processes belonging to 356625
[2025-11-26 10:57:17] 2025-11-26 15:56:43,527 | INFO     | did not find any defunct processes belonging to 356625
[2025-11-26 10:57:17] 2025-11-26 15:56:43,530 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:57:17] 2025-11-26 15:56:43,531 | INFO     | ready for new job
[2025-11-26 10:57:17] 2025-11-26 15:56:43,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:57:17] 2025-11-26 15:56:43,535 | INFO     | ***************************************
[2025-11-26 10:57:17] 2025-11-26 15:56:43,535 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:57:17] 2025-11-26 15:56:43,535 | INFO     | ***************************************
[2025-11-26 10:57:17] 2025-11-26 15:56:43,535 | INFO     | 
[2025-11-26 10:57:17] 2025-11-26 15:56:43,540 | INFO     | architecture information:
[2025-11-26 10:57:17] 2025-11-26 15:56:43,540 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:57:17] 2025-11-26 15:56:43,576 | INFO     | cat /etc/os-release:
[2025-11-26 10:57:17] NAME="CentOS Linux"
[2025-11-26 10:57:17] VERSION="7 (Core)"
[2025-11-26 10:57:17] ID="centos"
[2025-11-26 10:57:17] ID_LIKE="rhel fedora"
[2025-11-26 10:57:17] VERSION_ID="7"
[2025-11-26 10:57:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:57:17] ANSI_COLOR="0;31"
[2025-11-26 10:57:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:57:17] HOME_URL="https://www.centos.org/"
[2025-11-26 10:57:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:57:17] 
[2025-11-26 10:57:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:57:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:57:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:57:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:57:17] 
[2025-11-26 10:57:17] 2025-11-26 15:56:43,576 | INFO     | ***************************************
[2025-11-26 10:57:17] 2025-11-26 15:56:44,080 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 10:57:17] 2025-11-26 15:56:44,105 | INFO     | sufficient remaining disk space (121816219648 B)
[2025-11-26 10:57:17] 2025-11-26 15:56:44,105 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:57:17] 2025-11-26 15:56:44,106 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:57:17] 2025-11-26 15:56:44,106 | INFO     | update_server=False
[2025-11-26 10:57:17] 2025-11-26 15:56:44,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:57:17] 2025-11-26 15:56:44,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:57:17] 2025-11-26 15:56:44,107 | INFO     | aborting loop
[2025-11-26 10:57:17] 2025-11-26 15:56:44,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:57:17] 2025-11-26 15:56:44,159 | INFO     | all payload control threads have been joined
[2025-11-26 10:57:17] 2025-11-26 15:56:44,260 | INFO     | all job control threads have been joined
[2025-11-26 10:57:17] 2025-11-26 15:56:44,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:57:17] 2025-11-26 15:56:45,111 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:45,112 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:45,156 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:45,165 | INFO     | [payload] control thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:45,184 | INFO     | all data control threads have been joined
[2025-11-26 10:57:17] 2025-11-26 15:56:45,260 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:45,266 | INFO     | [job] control thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:45,485 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:45,603 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:45,864 | INFO     | [job] validate thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:46,190 | INFO     | [data] control thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:46,427 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:46,523 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:46,543 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:46,895 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:57:17] 2025-11-26 15:56:46,905 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:47,901 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:56:48,116 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:57:17] 2025-11-26 15:57:01,897 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:57:17] 2025-11-26 15:57:01,943 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140681234425664)>', '<ExcThread(monitor, started 140680294815488)>']
[2025-11-26 10:57:17] 2025-11-26 15:57:06,969 | INFO     | all workflow threads have been joined
[2025-11-26 10:57:17] 2025-11-26 15:57:06,969 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:57:17] 2025-11-26 15:57:06,969 | INFO     | traces error code: 0
[2025-11-26 10:57:17] 2025-11-26 15:57:06,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:57:17] 2025-11-26 15:57:15,745 | INFO     | PID=349782 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 10:57:17] 2025-11-26 15:57:15,745 | INFO     | .. there are 25 such processes running
[2025-11-26 10:57:17] 2025-11-26 15:57:15,746 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:57:17] 2025-11-26 15:57:15,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:57:17] 2025-11-26 15:57:15,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:57:17] 2025-11-26 15:57:15,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:57:17] 2025-11-26 15:57:15,746 | INFO     | [monitor] control thread has ended
[2025-11-26 10:57:17] 2025-11-26 15:57:16,171 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:57:17] 2025-11-26 15:57:16,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:57:17] 2025-11-26 15:57:16,209 [wrapper] pilotpid: 349782
[2025-11-26 10:57:17] 2025-11-26 15:57:16,222 [wrapper] Pilot exit status: 0
[2025-11-26 10:57:17] 2025-11-26 15:57:16,314 [wrapper] pandaids: 6891105196
[2025-11-26 10:57:17] 2025-11-26 15:57:16,556 [wrapper] cleanup supervisor_pilot  520652 349783
[2025-11-26 10:57:17] 2025-11-26 15:57:16,569 [wrapper] Test setup, not cleaning
[2025-11-26 10:57:17] 2025-11-26 15:57:16,584 [wrapper] apfmon messages muted
[2025-11-26 10:57:17] 2025-11-26 15:57:16,599 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:57:17] 2025-11-26 15:57:16,619 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:57:17]  *** Error codes and diagnostics ***
[2025-11-26 10:57:17]     "exeErrorCode": 0,
[2025-11-26 10:57:17]     "exeErrorDiag": "",
[2025-11-26 10:57:17]     "pilotErrorCode": 0,
[2025-11-26 10:57:17]     "pilotErrorDiag": "",
[2025-11-26 10:57:17]  *** Listing of results directory ***
[2025-11-26 10:57:17] total 1318624
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:58 queuedata.json
[2025-11-26 10:57:17] -rwx------. 1 boincer umatlas     36292 Nov 18 01:59 runpilot2-wrapper.sh
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas       100 Nov 25 15:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:57:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 15:48 run_atlas
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas       105 Nov 25 15:48 job.xml
[2025-11-26 10:57:17] -rw-r--r--. 2 boincer umatlas 411156688 Nov 25 15:48 EVNT.47483658._000235.pool.root.1
[2025-11-26 10:57:17] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 15:48 start_atlas.sh
[2025-11-26 10:57:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 15:48 shared
[2025-11-26 10:57:17] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 15:48 input.tar.gz
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas         0 Nov 25 15:48 boinc_lockfile
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas      2773 Nov 25 15:48 pandaJob.out
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas    991893 Nov 25 15:48 agis_schedconf.cvmfs.json
[2025-11-26 10:57:17] drwx------. 5 boincer umatlas      4096 Nov 25 15:48 pilot3
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 10:49 init_data.xml
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas       533 Nov 26 10:50 boinc_task_state.xml
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas 913381195 Nov 26 10:55 HITS.47483661._002050.pool.root.1
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas      1076 Nov 26 10:56 memory_monitor_summary.json
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas   1516240 Nov 26 10:56 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas   2240828 Nov 26 10:56 log.47483661._002050.job.log.tgz.1
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas      8640 Nov 26 10:56 heartbeat.json
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 10:57 boinc_mmap_file
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas        29 Nov 26 10:57 wrapper_checkpoint.txt
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas       822 Nov 26 10:57 pilotlog.txt
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas        95 Nov 26 10:57 pilot_heartbeat.json
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas   8665616 Nov 26 10:57 log.47483661._002050.job.log.1
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas       353 Nov 26 10:57 output.list
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas       620 Nov 26 10:57 runtime_log
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas  10926080 Nov 26 10:57 result.tar.gz
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas       665 Nov 26 10:57 THVLDmfrUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEOKODm7qZx8n.diag
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas      8699 Nov 26 10:57 runtime_log.err
[2025-11-26 10:57:17] -rw-r--r--. 1 boincer umatlas     20491 Nov 26 10:57 stderr.txt
[2025-11-26 10:57:17] HITS file was successfully produced:
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas 913381195 Nov 26 10:55 shared/HITS.pool.root.1
[2025-11-26 10:57:17]  *** Contents of shared directory: ***
[2025-11-26 10:57:17] total 1304776
[2025-11-26 10:57:17] -rw-r--r--. 2 boincer umatlas 411156688 Nov 25 15:48 ATLAS.root_0
[2025-11-26 10:57:17] -rw-r--r--. 2 boincer umatlas     15120 Nov 25 15:48 start_atlas.sh
[2025-11-26 10:57:17] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 15:48 input.tar.gz
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas 913381195 Nov 26 10:55 HITS.pool.root.1
[2025-11-26 10:57:17] -rw-------. 1 boincer umatlas  10926080 Nov 26 10:57 result.tar.gz
10:57:19 (345886): run_atlas exited; CPU time 202169.625592
10:57:19 (345886): called boinc_finish(0)

</stderr_txt>
]]>

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