Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:58:09 (16822): wrapper (7.7.26015): starting
12:58:09 (16822): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 12:58:09] Arguments: --nthreads 12
[2025-11-25 12:58:09] Threads: 12
[2025-11-25 12:58:09] Checking for CVMFS
[2025-11-25 12:58:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:58:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:58:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:58:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:58:09] 2.11.2.0 3009 71838 99912 153292 1 81 15761448 20275201 1 130560 0 29522237 99.913 3770273 34596 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 12:58:09] CVMFS is ok
[2025-11-25 12:58:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:58:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:58:09] Further information can be found at the LHC@home message board.
[2025-11-25 12:58:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:58:09] Checking for apptainer binary...
[2025-11-25 12:58:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:58:09] Running /usr/bin/apptainer --version
[2025-11-25 12:58:09] apptainer version 1.3.2-1.el7
[2025-11-25 12:58:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:58:11] c-115-42.aglt2.org
[2025-11-25 12:58:11] apptainer works
[2025-11-25 12:58:11] Set ATHENA_PROC_NUMBER=12
[2025-11-25 12:58:11] Set ATHENA_CORE_NUMBER=12
[2025-11-25 12:58:11] Starting ATLAS job with PandaID=6896219302
[2025-11-25 12:58:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:33:11]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:33:11] 2025-11-26 00:32:21,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:33:11] 2025-11-26 00:32:21,526 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 19:33:11] 2025-11-26 00:32:21,530 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2025-11-25 19:33:11] 2025-11-26 00:32:21,532 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896219302/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:33:11] 2025-11-26 00:32:21,533 | INFO     | extracted standard info from prmon json
[2025-11-25 19:33:11] 2025-11-26 00:32:21,534 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:33:11] 2025-11-26 00:32:21,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:33:11] 2025-11-26 00:32:21,540 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:33:11] 2025-11-26 00:32:21,541 | INFO     | sum of square deviations: 17972492167.602036
[2025-11-25 19:33:11] 2025-11-26 00:32:21,544 | INFO     | sum of deviations: 336431315465.3645
[2025-11-25 19:33:11] 2025-11-26 00:32:21,544 | INFO     | mean x: 1764105307.2351422
[2025-11-25 19:33:11] 2025-11-26 00:32:21,544 | INFO     | mean y: 4093480.19379845
[2025-11-25 19:33:11] 2025-11-26 00:32:21,544 | INFO     | intersect: -33018609414.75687
[2025-11-25 19:33:11] 2025-11-26 00:32:21,545 | INFO     | chi2: 5.449819797864011
[2025-11-25 19:33:11] 2025-11-26 00:32:21,545 | INFO     | sum of square deviations: 17284869819.822037
[2025-11-25 19:33:11] 2025-11-26 00:32:21,548 | INFO     | sum of deviations: 503064673561.4969
[2025-11-25 19:33:11] 2025-11-26 00:32:21,548 | INFO     | mean x: 1764105154.73822
[2025-11-25 19:33:11] 2025-11-26 00:32:21,548 | INFO     | mean y: 4130392.554973822
[2025-11-25 19:33:11] 2025-11-26 00:32:21,548 | INFO     | intersect: -51338980261.296265
[2025-11-25 19:33:11] 2025-11-26 00:32:21,549 | INFO     | chi2: 2.7911567790308314
[2025-11-25 19:33:11] 2025-11-26 00:32:21,549 | INFO     | current chi2=2.7911567790308314 (change=48.78442072296059 %)
[2025-11-25 19:33:11] 2025-11-26 00:32:21,549 | INFO     | sum of square deviations: 16615015247.03449
[2025-11-25 19:33:11] 2025-11-26 00:32:21,552 | INFO     | sum of deviations: 535300615838.1724
[2025-11-25 19:33:11] 2025-11-26 00:32:21,552 | INFO     | mean x: 1764105002.2413793
[2025-11-25 19:33:11] 2025-11-26 00:32:21,552 | INFO     | mean y: 4137657.5145888594
[2025-11-25 19:33:11] 2025-11-26 00:32:21,552 | INFO     | intersect: -56831590752.157364
[2025-11-25 19:33:11] 2025-11-26 00:32:21,553 | INFO     | chi2: 2.4377739246099557
[2025-11-25 19:33:11] 2025-11-26 00:32:21,553 | INFO     | current chi2=2.4377739246099557 (change=12.660802756611195 %)
[2025-11-25 19:33:11] 2025-11-26 00:32:21,553 | INFO     | right removable region: 376
[2025-11-25 19:33:11] 2025-11-26 00:32:21,553 | INFO     | sum of square deviations: 17284837672.29575
[2025-11-25 19:33:11] 2025-11-26 00:32:21,556 | INFO     | sum of deviations: 190972151125.51846
[2025-11-25 19:33:11] 2025-11-26 00:32:21,556 | INFO     | mean x: 1764105459.7356021
[2025-11-25 19:33:11] 2025-11-26 00:32:21,557 | INFO     | mean y: 4125611.0942408377
[2025-11-25 19:33:11] 2025-11-26 00:32:21,557 | INFO     | intersect: -19486657053.18019
[2025-11-25 19:33:11] 2025-11-26 00:32:21,557 | INFO     | chi2: 3.1382665771557554
[2025-11-25 19:33:11] 2025-11-26 00:32:21,557 | INFO     | current chi2=3.1382665771557554 (change=42.415223006350416 %)
[2025-11-25 19:33:11] 2025-11-26 00:32:21,558 | INFO     | sum of square deviations: 16614927894.514555
[2025-11-25 19:33:11] 2025-11-26 00:32:21,560 | INFO     | sum of deviations: 161246890902.51965
[2025-11-25 19:33:11] 2025-11-26 00:32:21,561 | INFO     | mean x: 1764105612.2387269
[2025-11-25 19:33:11] 2025-11-26 00:32:21,561 | INFO     | mean y: 4132364.416445623
[2025-11-25 19:33:11] 2025-11-26 00:32:21,561 | INFO     | intersect: -17116408091.921885
[2025-11-25 19:33:11] 2025-11-26 00:32:21,561 | INFO     | chi2: 3.0987257705420324
[2025-11-25 19:33:11] 2025-11-26 00:32:21,561 | INFO     | current chi2=3.0987257705420324 (change=1.2599569106573256 %)
[2025-11-25 19:33:11] 2025-11-26 00:32:21,561 | INFO     | left removable region: 20
[2025-11-25 19:33:11] 2025-11-26 00:32:21,562 | INFO     | sum of square deviations: 13990270887.738813
[2025-11-25 19:33:11] 2025-11-26 00:32:21,564 | INFO     | sum of deviations: 320301157438.4213
[2025-11-25 19:33:11] 2025-11-26 00:32:21,565 | INFO     | mean x: 1764105581.744382
[2025-11-25 19:33:11] 2025-11-26 00:32:21,565 | INFO     | mean y: 4187626.9606741574
[2025-11-25 19:33:11] 2025-11-26 00:32:21,565 | INFO     | intersect: -40384241175.480545
[2025-11-25 19:33:11] 2025-11-26 00:32:21,565 | INFO     | chi2: 0.0369191391902661
[2025-11-25 19:33:11] 2025-11-26 00:32:21,565 | INFO     | current memory leak: 22.89 B/s (using 356 data points, chi2=0.04)
[2025-11-25 19:33:11] 2025-11-26 00:32:21,566 | INFO     | could have reported an average CPU frequency of 2551 MHz (17 samples)
[2025-11-25 19:33:11] 2025-11-26 00:32:21,566 | INFO     | ..............................
[2025-11-25 19:33:11] 2025-11-26 00:32:21,566 | INFO     | . Timing measurements:
[2025-11-25 19:33:11] 2025-11-26 00:32:21,567 | INFO     | . get job = 0 s
[2025-11-25 19:33:11] 2025-11-26 00:32:21,567 | INFO     | . initial setup = 2 s
[2025-11-25 19:33:11] 2025-11-26 00:32:21,567 | INFO     | . payload setup = 7 s
[2025-11-25 19:33:11] 2025-11-26 00:32:21,567 | INFO     | . stage-in = 0 s
[2025-11-25 19:33:11] 2025-11-26 00:32:21,567 | INFO     | . payload execution = 23597 s
[2025-11-25 19:33:11] 2025-11-26 00:32:21,567 | INFO     | . stage-out = 3 s
[2025-11-25 19:33:11] 2025-11-26 00:32:21,567 | INFO     | . log creation = 0 s
[2025-11-25 19:33:11] 2025-11-26 00:32:21,567 | INFO     | ..............................
[2025-11-25 19:33:11] 2025-11-26 00:32:21,660 | INFO     | time since job start (23635s) is within the limit (172800.0s)
[2025-11-25 19:33:11] 2025-11-26 00:32:22,068 | INFO     | 
[2025-11-25 19:33:11] 2025-11-26 00:32:22,069 | INFO     | job summary report
[2025-11-25 19:33:11] 2025-11-26 00:32:22,069 | INFO     | --------------------------------------------------
[2025-11-25 19:33:11] 2025-11-26 00:32:22,069 | INFO     | PanDA job id: 6896219302
[2025-11-25 19:33:11] 2025-11-26 00:32:22,069 | INFO     | task id: 47556149
[2025-11-25 19:33:11] 2025-11-26 00:32:22,069 | INFO     | errors: (none)
[2025-11-25 19:33:11] 2025-11-26 00:32:22,070 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:33:11] 2025-11-26 00:32:22,070 | INFO     | pilot state: finished 
[2025-11-25 19:33:11] 2025-11-26 00:32:22,070 | INFO     | transexitcode: 0
[2025-11-25 19:33:11] 2025-11-26 00:32:22,070 | INFO     | exeerrorcode: 0
[2025-11-25 19:33:11] 2025-11-26 00:32:22,070 | INFO     | exeerrordiag: 
[2025-11-25 19:33:11] 2025-11-26 00:32:22,071 | INFO     | exitcode: 0
[2025-11-25 19:33:11] 2025-11-26 00:32:22,071 | INFO     | exitmsg: OK
[2025-11-25 19:33:11] 2025-11-26 00:32:22,071 | INFO     | cpuconsumptiontime: 272971 s
[2025-11-25 19:33:11] 2025-11-26 00:32:22,071 | INFO     | nevents: 1000
[2025-11-25 19:33:11] 2025-11-26 00:32:22,071 | INFO     | neventsw: 0
[2025-11-25 19:33:11] 2025-11-26 00:32:22,071 | INFO     | pid: 27054
[2025-11-25 19:33:11] 2025-11-26 00:32:22,072 | INFO     | pgrp: 27054
[2025-11-25 19:33:11] 2025-11-26 00:32:22,072 | INFO     | corecount: 12
[2025-11-25 19:33:11] 2025-11-26 00:32:22,072 | INFO     | event service: False
[2025-11-25 19:33:11] 2025-11-26 00:32:22,072 | INFO     | sizes: {0: 2283486, 1: 2284342, 6: 2284604, 12: 2284632, 23608: 2320673, 23612: 2329667, 23615: 2329851, 23620: 2330161}
[2025-11-25 19:33:11] 2025-11-26 00:32:22,072 | INFO     | --------------------------------------------------
[2025-11-25 19:33:11] 2025-11-26 00:32:22,072 | INFO     | 
[2025-11-25 19:33:11] 2025-11-26 00:32:22,073 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 19:33:11] 2025-11-26 00:32:22,097 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,097 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,098 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,098 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,098 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,098 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,098 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,099 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,099 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,099 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,099 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,100 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,100 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:33:11] 2025-11-26 00:32:22,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,101 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:33:11] 2025-11-26 00:32:22,101 | INFO     | job 6896219302 has completed (purged errors)
[2025-11-25 19:33:11] 2025-11-26 00:32:22,101 | INFO     | overall cleanup function is called
[2025-11-25 19:33:11] 2025-11-26 00:32:22,775 | INFO     | PID=20495 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 19:33:11] 2025-11-26 00:32:23,115 | INFO     | --- collectZombieJob: --- 10, [27054]
[2025-11-25 19:33:11] 2025-11-26 00:32:23,115 | INFO     | zombie collector waiting for pid 27054
[2025-11-25 19:33:11] 2025-11-26 00:32:23,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:33:11] 2025-11-26 00:32:23,115 | INFO     | collected zombie processes
[2025-11-25 19:33:11] 2025-11-26 00:32:23,116 | INFO     | will attempt to kill all subprocesses of pid=27054
[2025-11-25 19:33:11] 2025-11-26 00:32:23,203 | INFO     | process IDs to be killed: [27054] (in reverse order)
[2025-11-25 19:33:11] 2025-11-26 00:32:23,252 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:33:11] 2025-11-26 00:32:23,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:33:11] 2025-11-26 00:32:23,256 | INFO     | did not find any defunct processes belonging to 27054
[2025-11-25 19:33:11] 2025-11-26 00:32:23,258 | INFO     | did not find any defunct processes belonging to 27054
[2025-11-25 19:33:11] 2025-11-26 00:32:23,261 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:33:11] 2025-11-26 00:32:23,261 | INFO     | ready for new job
[2025-11-25 19:33:11] 2025-11-26 00:32:23,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:33:11] 2025-11-26 00:32:23,263 | INFO     | ***************************************
[2025-11-25 19:33:11] 2025-11-26 00:32:23,264 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:33:11] 2025-11-26 00:32:23,264 | INFO     | ***************************************
[2025-11-25 19:33:11] 2025-11-26 00:32:23,264 | INFO     | 
[2025-11-25 19:33:11] 2025-11-26 00:32:23,264 | INFO     | architecture information:
[2025-11-25 19:33:11] 2025-11-26 00:32:23,265 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:33:11] 2025-11-26 00:32:23,281 | INFO     | cat /etc/os-release:
[2025-11-25 19:33:11] NAME="CentOS Linux"
[2025-11-25 19:33:11] VERSION="7 (Core)"
[2025-11-25 19:33:11] ID="centos"
[2025-11-25 19:33:11] ID_LIKE="rhel fedora"
[2025-11-25 19:33:11] VERSION_ID="7"
[2025-11-25 19:33:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:33:11] ANSI_COLOR="0;31"
[2025-11-25 19:33:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:33:11] HOME_URL="https://www.centos.org/"
[2025-11-25 19:33:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:33:11] 
[2025-11-25 19:33:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:33:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:33:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:33:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:33:11] 
[2025-11-25 19:33:11] 2025-11-26 00:32:23,281 | INFO     | ***************************************
[2025-11-25 19:33:11] 2025-11-26 00:32:23,784 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 19:33:11] 2025-11-26 00:32:23,800 | INFO     | sufficient remaining disk space (17440964608 B)
[2025-11-25 19:33:11] 2025-11-26 00:32:23,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:33:11] 2025-11-26 00:32:23,801 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:33:11] 2025-11-26 00:32:23,801 | INFO     | update_server=False
[2025-11-25 19:33:11] 2025-11-26 00:32:23,801 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:33:11] 2025-11-26 00:32:23,802 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:33:11] 2025-11-26 00:32:23,902 | INFO     | all data control threads have been joined
[2025-11-25 19:33:11] 2025-11-26 00:32:23,951 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:33:11] 2025-11-26 00:32:24,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:33:11] 2025-11-26 00:32:24,573 | INFO     | aborting loop
[2025-11-25 19:33:11] 2025-11-26 00:32:24,579 | INFO     | all job control threads have been joined
[2025-11-25 19:33:11] 2025-11-26 00:32:24,761 | INFO     | all payload control threads have been joined
[2025-11-25 19:33:11] 2025-11-26 00:32:24,807 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:24,908 | INFO     | [data] control thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,006 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,149 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,359 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,508 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,575 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,578 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,584 | INFO     | [job] control thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,766 | INFO     | [payload] control thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:25,956 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:26,012 | INFO     | [job] validate thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:26,013 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:26,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:33:11] 2025-11-26 00:32:27,657 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:27,808 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:34,175 | INFO     | job.realtimelogging is not enabled
[2025-11-25 19:33:11] 2025-11-26 00:32:35,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:33:11] 2025-11-26 00:32:54,969 | INFO     | PID=20495 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 19:33:11] 2025-11-26 00:32:54,969 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:33:11] 2025-11-26 00:32:54,969 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:33:11] 2025-11-26 00:32:54,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:33:11] 2025-11-26 00:33:04,513 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:33:11] 2025-11-26 00:33:05,909 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781417207616)>', '<ExcThread(monitor, started 139780826318592)>']
[2025-11-25 19:33:11] 2025-11-26 00:33:06,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:33:11] 2025-11-26 00:33:06,025 | INFO     | [monitor] control thread has ended
[2025-11-25 19:33:11] 2025-11-26 00:33:10,910 | INFO     | all workflow threads have been joined
[2025-11-25 19:33:11] 2025-11-26 00:33:10,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:33:11] 2025-11-26 00:33:10,910 | INFO     | traces error code: 0
[2025-11-25 19:33:11] 2025-11-26 00:33:10,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:33:11] 2025-11-26 00:33:11,012 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:33:11] 2025-11-26 00:33:11,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:33:11] 2025-11-26 00:33:11,020 [wrapper] pilotpid: 20495
[2025-11-25 19:33:11] 2025-11-26 00:33:11,023 [wrapper] Pilot exit status: 0
[2025-11-25 19:33:11] 2025-11-26 00:33:11,036 [wrapper] pandaids: 6896219302
[2025-11-25 19:33:11] 2025-11-26 00:33:11,080 [wrapper] cleanup supervisor_pilot   467 20496
[2025-11-25 19:33:11] 2025-11-26 00:33:11,083 [wrapper] Test setup, not cleaning
[2025-11-25 19:33:11] 2025-11-26 00:33:11,087 [wrapper] apfmon messages muted
[2025-11-25 19:33:11] 2025-11-26 00:33:11,091 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:33:11] 2025-11-26 00:33:11,094 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:33:11]  *** Error codes and diagnostics ***
[2025-11-25 19:33:11]     "exeErrorCode": 0,
[2025-11-25 19:33:11]     "exeErrorDiag": "",
[2025-11-25 19:33:11]     "pilotErrorCode": 0,
[2025-11-25 19:33:11]     "pilotErrorDiag": "",
[2025-11-25 19:33:11]  *** Listing of results directory ***
[2025-11-25 19:33:11] total 1338884
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 14:57 queuedata.json
[2025-11-25 19:33:11] -rwx------ 1 boincer umatlas     36292 Nov 24 14:57 runpilot2-wrapper.sh
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas       100 Nov 25 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:33:11] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 12:58 run_atlas
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas       105 Nov 25 12:58 job.xml
[2025-11-25 19:33:11] -rw-r--r-- 2 boincer umatlas 412979922 Nov 25 12:58 EVNT.47483658._001412.pool.root.1
[2025-11-25 19:33:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 12:58 start_atlas.sh
[2025-11-25 19:33:11] drwxrwx--x 2 boincer umatlas      4096 Nov 25 12:58 shared
[2025-11-25 19:33:11] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 12:58 input.tar.gz
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas         0 Nov 25 12:58 boinc_lockfile
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 12:58 pandaJob.out
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas        57 Nov 25 12:58 setup.sh.local
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas    991543 Nov 25 12:58 agis_schedconf.cvmfs.json
[2025-11-25 19:33:11] drwx------ 5 boincer umatlas      4096 Nov 25 12:58 pilot3
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas       533 Nov 25 19:23 boinc_task_state.xml
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas      5955 Nov 25 19:31 init_data.xml
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas 943192049 Nov 25 19:31 HITS.47556149._003989.pool.root.1
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas      1064 Nov 25 19:32 memory_monitor_summary.json
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas   1516240 Nov 25 19:32 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas   2151924 Nov 25 19:32 log.47556149._003989.job.log.tgz.1
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas        95 Nov 25 19:32 pilot_heartbeat.json
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas      8667 Nov 25 19:32 heartbeat.json
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 19:33 boinc_mmap_file
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas        29 Nov 25 19:33 wrapper_checkpoint.txt
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas      4818 Nov 25 19:33 pilotlog.txt
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas   3307824 Nov 25 19:33 log.47556149._003989.job.log.1
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas       353 Nov 25 19:33 output.list
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas       620 Nov 25 19:33 runtime_log
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas   5478400 Nov 25 19:33 result.tar.gz
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas       669 Nov 25 19:33 zeNKDmAsrh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmztLKDmcflDZm.diag
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas      9345 Nov 25 19:33 runtime_log.err
[2025-11-25 19:33:11] -rw-r--r-- 1 boincer umatlas     21403 Nov 25 19:33 stderr.txt
[2025-11-25 19:33:11] HITS file was successfully produced:
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas 943192049 Nov 25 19:31 shared/HITS.pool.root.1
[2025-11-25 19:33:11]  *** Contents of shared directory: ***
[2025-11-25 19:33:11] total 1330348
[2025-11-25 19:33:11] -rw-r--r-- 2 boincer umatlas 412979922 Nov 25 12:58 ATLAS.root_0
[2025-11-25 19:33:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 12:58 start_atlas.sh
[2025-11-25 19:33:11] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 12:58 input.tar.gz
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas 943192049 Nov 25 19:31 HITS.pool.root.1
[2025-11-25 19:33:11] -rw------- 1 boincer umatlas   5478400 Nov 25 19:33 result.tar.gz
19:33:12 (16822): run_atlas exited; CPU time 269468.654508
19:33:12 (16822): called boinc_finish(0)

</stderr_txt>
]]>

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