Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:51:30 (980724): wrapper (7.7.26015): starting
09:51:30 (980724): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 09:51:30] Arguments: --nthreads 8
[2025-11-25 09:51:30] Threads: 8
[2025-11-25 09:51:30] Checking for CVMFS
[2025-11-25 09:51:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:51:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:51:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:51:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:51:30] 2.11.3.0 3082052 27267 181552 153292 1 85 26196133 45568001 17619 130560 0 184537534 99.803 111925373 22969 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 09:51:30] CVMFS is ok
[2025-11-25 09:51:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:51:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:51:30] Further information can be found at the LHC@home message board.
[2025-11-25 09:51:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:51:30] Checking for apptainer binary...
[2025-11-25 09:51:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:51:30] Running /usr/bin/apptainer --version
[2025-11-25 09:51:30] apptainer version 1.4.1-1.el9
[2025-11-25 09:51:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:51:31] wns0019.triumf.lcg
[2025-11-25 09:51:31] apptainer works
[2025-11-25 09:51:31] Set ATHENA_PROC_NUMBER=8
[2025-11-25 09:51:31] Set ATHENA_CORE_NUMBER=8
[2025-11-25 09:51:31] Starting ATLAS job with PandaID=6896715650
[2025-11-25 09:51:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 09:58:08]  *** The last 200 lines of the pilot log: ***
[2025-11-25 09:58:08] 2025-11-25 17:57:32,983 | WARNING  | wrong length of table data, x=[1764093153.0, 1764093214.0, 1764093275.0], y=[805.0, 610967.0, 933048.0] (must be same and length>=4)
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | ..............................
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . Timing measurements:
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . get job = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . initial setup = 3 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . payload setup = 11 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . stage-in = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . payload execution = 181 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . stage-out = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . log creation = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | ..............................
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 09:58:08] 2025-11-25 17:57:32,985 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896715650/pilotlog.txt
[2025-11-25 09:58:08] 2025-11-25 17:57:33,024 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 09:58:08] - Log from pilotlog.txt -
[2025-11-25 09:58:08] 2025-11-25 17:57:32,981 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896715650/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | INFO     | extracted standard info from prmon json
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 09:58:08] 2025-11-25 17:57:32,983 | WARNING  | wrong length of table data, x=[1764093153.0, 1764093214.0, 1764093275.0], y=[805.0, 610967.0, 933048.0] (must be same and length>=4)
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | ..............................
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . Timing measurements:
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . get job = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . initial setup = 3 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . payload setup = 11 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . stage-in = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . payload execution = 181 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . stage-out = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . log creation = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | ..............................
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 09:58:08] 2025-11-25 17:57:32,985 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896715650/pilotlog.txt
[2025-11-25 09:58:08] 2025-11-25 17:57:33,025 | WARNING  | 
[2025-11-25 09:58:08] [begin log extracts]
[2025-11-25 09:58:08] - Log from pilotlog.txt -
[2025-11-25 09:58:08] 2025-11-25 17:57:32,981 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896715650/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | INFO     | extracted standard info from prmon json
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 09:58:08] 2025-11-25 17:57:32,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 09:58:08] 2025-11-25 17:57:32,983 | WARNING  | wrong length of table data, x=[1764093153.0, 1764093214.0, 1764093275.0], y=[805.0, 610967.0, 933048.0] (must be same and length>=4)
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | ..............................
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . Timing measurements:
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . get job = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . initial setup = 3 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . payload setup = 11 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . stage-in = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . payload execution = 181 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . stage-out = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | . log creation = 0 s
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | ..............................
[2025-11-25 09:58:08] 2025-11-25 17:57:32,984 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 09:58:08] 2025-11-25 17:57:32,985 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896715650/pilotlog.txt
[2025-11-25 09:58:08] [end log extracts]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,026 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 09:58:08] 2025-11-25 17:57:33,027 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 09:58:08] 2025-11-25 17:57:33,435 | INFO     | time since job start (342s) is within the limit (172800.0s)
[2025-11-25 09:58:08] 2025-11-25 17:57:33,780 | INFO     | 
[2025-11-25 09:58:08] 2025-11-25 17:57:33,780 | INFO     | job summary report
[2025-11-25 09:58:08] 2025-11-25 17:57:33,780 | INFO     | --------------------------------------------------
[2025-11-25 09:58:08] 2025-11-25 17:57:33,780 | INFO     | PanDA job id: 6896715650
[2025-11-25 09:58:08] 2025-11-25 17:57:33,780 | INFO     | task id: 47556173
[2025-11-25 09:58:08] 2025-11-25 17:57:33,780 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 09:55:19,349 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 09:58:08] 2025-11-25 17:57:33,780 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 09:58:08] 2025-11-25 17:57:33,780 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | pilot state: failed 
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | transexitcode: 65
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | exeerrorcode: 65
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | exitcode: 65
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | cpuconsumptiontime: 50 s
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | nevents: 0
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | neventsw: 0
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | pid: 998344
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | pgrp: 998344
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | corecount: 8
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | event service: False
[2025-11-25 09:58:08] 2025-11-25 17:57:33,781 | INFO     | sizes: {0: 2283434, 1: 2284116, 2: 2284315, 12: 2284577, 13: 2284605, 193: 2310075, 194: 2310179, 195: 2314497, 199: 2314525, 321: 2314719}
[2025-11-25 09:58:08] 2025-11-25 17:57:33,782 | INFO     | --------------------------------------------------
[2025-11-25 09:58:08] 2025-11-25 17:57:33,782 | INFO     | 
[2025-11-25 09:58:08] 2025-11-25 17:57:33,782 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 09:58:08] 2025-11-25 17:57:33,972 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,972 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,972 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,973 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,974 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,974 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 09:58:08] 2025-11-25 17:57:33,974 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,974 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 09:58:08] 2025-11-25 17:57:33,974 | INFO     | job 6896715650 has completed (purged errors)
[2025-11-25 09:58:08] 2025-11-25 17:57:33,974 | INFO     | overall cleanup function is called
[2025-11-25 09:58:08] 2025-11-25 17:57:34,993 | INFO     | --- collectZombieJob: --- 10, [998344]
[2025-11-25 09:58:08] 2025-11-25 17:57:34,993 | INFO     | zombie collector waiting for pid 998344
[2025-11-25 09:58:08] 2025-11-25 17:57:34,993 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 09:58:08] 2025-11-25 17:57:34,993 | INFO     | collected zombie processes
[2025-11-25 09:58:08] 2025-11-25 17:57:34,993 | INFO     | will attempt to kill all subprocesses of pid=998344
[2025-11-25 09:58:08] 2025-11-25 17:57:35,593 | INFO     | process IDs to be killed: [998344] (in reverse order)
[2025-11-25 09:58:08] 2025-11-25 17:57:35,656 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 09:58:08] 2025-11-25 17:57:35,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 09:58:08] 2025-11-25 17:57:35,677 | INFO     | did not find any defunct processes belonging to 998344
[2025-11-25 09:58:08] 2025-11-25 17:57:35,683 | INFO     | did not find any defunct processes belonging to 998344
[2025-11-25 09:58:08] 2025-11-25 17:57:35,684 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 09:58:08] 2025-11-25 17:57:35,684 | INFO     | ready for new job
[2025-11-25 09:58:08] 2025-11-25 17:57:35,684 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 09:58:08] 2025-11-25 17:57:35,685 | INFO     | ***************************************
[2025-11-25 09:58:08] 2025-11-25 17:57:35,686 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 09:58:08] 2025-11-25 17:57:35,686 | INFO     | ***************************************
[2025-11-25 09:58:08] 2025-11-25 17:57:35,686 | INFO     | 
[2025-11-25 09:58:08] 2025-11-25 17:57:35,687 | INFO     | architecture information:
[2025-11-25 09:58:08] 2025-11-25 17:57:35,732 | INFO     | executing command: cat /etc/os-release
[2025-11-25 09:58:08] 2025-11-25 17:57:35,748 | INFO     | cat /etc/os-release:
[2025-11-25 09:58:08] NAME="CentOS Linux"
[2025-11-25 09:58:08] VERSION="7 (Core)"
[2025-11-25 09:58:08] ID="centos"
[2025-11-25 09:58:08] ID_LIKE="rhel fedora"
[2025-11-25 09:58:08] VERSION_ID="7"
[2025-11-25 09:58:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 09:58:08] ANSI_COLOR="0;31"
[2025-11-25 09:58:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 09:58:08] HOME_URL="https://www.centos.org/"
[2025-11-25 09:58:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 09:58:08] 
[2025-11-25 09:58:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 09:58:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 09:58:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 09:58:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 09:58:08] 
[2025-11-25 09:58:08] 2025-11-25 17:57:35,748 | INFO     | ***************************************
[2025-11-25 09:58:08] 2025-11-25 17:57:36,251 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 09:58:08] 2025-11-25 17:57:36,270 | INFO     | sufficient remaining disk space (1277866016768 B)
[2025-11-25 09:58:08] 2025-11-25 17:57:36,270 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 09:58:08] 2025-11-25 17:57:36,270 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 09:58:08] 2025-11-25 17:57:36,270 | INFO     | update_server=False
[2025-11-25 09:58:08] 2025-11-25 17:57:36,271 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 09:58:08] 2025-11-25 17:57:36,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:58:08] 2025-11-25 17:57:36,271 | INFO     | aborting loop
[2025-11-25 09:58:08] 2025-11-25 17:57:36,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 09:58:08] 2025-11-25 17:57:36,307 | INFO     | all data control threads have been joined
[2025-11-25 09:58:08] 2025-11-25 17:57:36,466 | INFO     | all job control threads have been joined
[2025-11-25 09:58:08] 2025-11-25 17:57:36,954 | INFO     | all payload control threads have been joined
[2025-11-25 09:58:08] 2025-11-25 17:57:37,276 | INFO     | [job] retrieve thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:37,278 | INFO     | [job] job monitor thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:37,313 | INFO     | [data] control thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:37,452 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:37,472 | INFO     | [job] control thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:37,761 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:37,959 | INFO     | [payload] control thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:38,188 | INFO     | [job] validate thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:38,189 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:38,282 | INFO     | [data] copytool_out thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:38,323 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:58:08] 2025-11-25 17:57:38,464 | INFO     | [payload] validate_post thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:38,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 09:58:08] 2025-11-25 17:57:38,787 | INFO     | [data] copytool_in thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:38,790 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:38,809 | INFO     | [payload] failed_post thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:39,329 | INFO     | [job] queue monitor thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:42,605 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 09:58:08] 2025-11-25 17:57:51,475 | INFO     | [monitor] cgroup control has ended
[2025-11-25 09:58:08] 2025-11-25 17:57:52,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140236524017472)>', '<ExcThread(monitor, started 140236203988736)>']
[2025-11-25 09:58:08] 2025-11-25 17:57:57,457 | INFO     | all workflow threads have been joined
[2025-11-25 09:58:08] 2025-11-25 17:57:57,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 09:58:08] 2025-11-25 17:57:57,457 | INFO     | traces error code: 0
[2025-11-25 09:58:08] 2025-11-25 17:57:57,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 09:58:08] 2025-11-25 17:58:07,258 | INFO     | PID=984425 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 09:58:08] 2025-11-25 17:58:07,259 | INFO     | .. there are 19 such processes running
[2025-11-25 09:58:08] 2025-11-25 17:58:07,259 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 09:58:08] 2025-11-25 17:58:07,259 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 09:58:08] 2025-11-25 17:58:07,259 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 09:58:08] 2025-11-25 17:58:07,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 09:58:08] 2025-11-25 17:58:07,260 | INFO     | [monitor] control thread has ended
[2025-11-25 09:58:08] 2025-11-25 17:58:07,386 [wrapper] ==== pilot stdout END ====
[2025-11-25 09:58:08] 2025-11-25 17:58:07,424 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 09:58:08] 2025-11-25 17:58:07,461 [wrapper] pilotpid: 984425
[2025-11-25 09:58:08] 2025-11-25 17:58:07,482 [wrapper] Pilot exit status: 0
[2025-11-25 09:58:08] 2025-11-25 17:58:07,588 [wrapper] pandaids: 6896715650
[2025-11-25 09:58:08] 2025-11-25 17:58:07,881 [wrapper] cleanup supervisor_pilot  984431 984426
[2025-11-25 09:58:08] 2025-11-25 17:58:07,884 [wrapper] Test setup, not cleaning
[2025-11-25 09:58:08] 2025-11-25 17:58:07,887 [wrapper] apfmon messages muted
[2025-11-25 09:58:08] 2025-11-25 17:58:07,890 [wrapper] ==== wrapper stdout END ====
[2025-11-25 09:58:08] 2025-11-25 17:58:07,900 [wrapper] ==== wrapper stderr END ====
[2025-11-25 09:58:08]  *** Error codes and diagnostics ***
[2025-11-25 09:58:08]     "exeErrorCode": 65,
[2025-11-25 09:58:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 09:58:08]     "pilotErrorCode": 1305,
[2025-11-25 09:58:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 09:58:08]  *** Listing of results directory ***
[2025-11-25 09:58:08] total 404456
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc    576529 Nov 24 23:04 pilot3.tar.gz
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc      5112 Nov 24 23:12 queuedata.json
[2025-11-25 09:58:08] -rwx------. 1 boinc boinc     36292 Nov 24 23:16 runpilot2-wrapper.sh
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc       100 Nov 25 09:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 09:58:08] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 09:51 run_atlas
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc       105 Nov 25 09:51 job.xml
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc      6445 Nov 25 09:51 init_data.xml
[2025-11-25 09:58:08] -rw-r--r--. 2 boinc boinc 409929475 Nov 25 09:51 EVNT.47483658._003072.pool.root.1
[2025-11-25 09:58:08] -rw-r--r--. 2 boinc boinc     15847 Nov 25 09:51 start_atlas.sh
[2025-11-25 09:58:08] drwxrwx--x. 2 boinc boinc      4096 Nov 25 09:51 shared
[2025-11-25 09:58:08] -rw-r--r--. 2 boinc boinc    590103 Nov 25 09:51 input.tar.gz
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc         0 Nov 25 09:51 boinc_lockfile
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc      2784 Nov 25 09:51 pandaJob.out
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc    991543 Nov 25 09:51 agis_schedconf.cvmfs.json
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc   1516240 Nov 25 09:51 agis_ddmendpoints.agis.ALL.json
[2025-11-25 09:58:08] drwx------. 5 boinc boinc      4096 Nov 25 09:51 pilot3
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc       524 Nov 25 09:54 boinc_task_state.xml
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc      1008 Nov 25 09:55 memory_monitor_summary.json
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc     49919 Nov 25 09:55 log.47556173._000547.job.log.tgz.1
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc     10333 Nov 25 09:57 heartbeat.json
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc        95 Nov 25 09:58 pilot_heartbeat.json
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc       822 Nov 25 09:58 pilotlog.txt
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc        23 Nov 25 09:58 wrapper_checkpoint.txt
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc      8192 Nov 25 09:58 boinc_mmap_file
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc    108827 Nov 25 09:58 log.47556173._000547.job.log.1
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc       186 Nov 25 09:58 output.list
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc       620 Nov 25 09:58 runtime_log
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc    184320 Nov 25 09:58 result.tar.gz
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc      8634 Nov 25 09:58 runtime_log.err
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc       647 Nov 25 09:58 KRqKDm7S2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsEMKDmOKiVAn.diag
[2025-11-25 09:58:08] -rw-r--r--. 1 boinc boinc     22582 Nov 25 09:58 stderr.txt
[2025-11-25 09:58:08] No HITS result produced
[2025-11-25 09:58:08]  *** Contents of shared directory: ***
[2025-11-25 09:58:08] total 401104
[2025-11-25 09:58:08] -rw-r--r--. 2 boinc boinc 409929475 Nov 25 09:51 ATLAS.root_0
[2025-11-25 09:58:08] -rw-r--r--. 2 boinc boinc     15847 Nov 25 09:51 start_atlas.sh
[2025-11-25 09:58:08] -rw-r--r--. 2 boinc boinc    590103 Nov 25 09:51 input.tar.gz
[2025-11-25 09:58:08] -rw-------. 1 boinc boinc    184320 Nov 25 09:58 result.tar.gz
09:58:09 (980724): run_atlas exited; CPU time 52.202423
09:58:09 (980724): called boinc_finish(0)

</stderr_txt>
]]>

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