Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:28:33 (885858): wrapper (7.7.26015): starting
18:28:33 (885858): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:28:33] Arguments: --nthreads 8
[2025-11-25 18:28:33] Threads: 8
[2025-11-25 18:28:33] Checking for CVMFS
[2025-11-25 18:28:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:28:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:28:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:28:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:28:33] 2.13.2.0 7153 35056 225912 153302 3 235 37229361 40960001 26476 16776704 0 123141027 99.553 135063920 34191 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 18:28:33] CVMFS is ok
[2025-11-25 18:28:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:28:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:28:33] Further information can be found at the LHC@home message board.
[2025-11-25 18:28:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:28:33] Checking for apptainer binary...
[2025-11-25 18:28:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:28:33] Running /usr/bin/apptainer --version
[2025-11-25 18:28:33] apptainer version 1.4.4-1.el9
[2025-11-25 18:28:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:28:33] c-212-15.aglt2.org
[2025-11-25 18:28:33] apptainer works
[2025-11-25 18:28:33] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:28:33] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:28:33] Starting ATLAS job with PandaID=6895401416
[2025-11-25 18:28:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:09:06 (2477719): wrapper (7.7.26015): starting
20:09:06 (2477719): wrapper: running run_atlas (--nthreads 10)
[2025-11-25 20:09:06] Arguments: --nthreads 10
[2025-11-25 20:09:06] Threads: 10
[2025-11-25 20:09:06] This job has been restarted, cleaning up previous attempt
[2025-11-25 20:09:06] Checking for CVMFS
[2025-11-25 20:09:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:09:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:09:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:09:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:09:06] 2.13.2.0 7153 35156 237876 153303 3 378 39472829 40960001 23445 16776704 0 124656470 99.555 135736746 34090 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 20:09:06] CVMFS is ok
[2025-11-25 20:09:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:09:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:09:06] Further information can be found at the LHC@home message board.
[2025-11-25 20:09:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:09:06] Checking for apptainer binary...
[2025-11-25 20:09:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:09:06] Running /usr/bin/apptainer --version
[2025-11-25 20:09:07] apptainer version 1.4.4-1.el9
[2025-11-25 20:09:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:09:07] c-212-15.aglt2.org
[2025-11-25 20:09:07] apptainer works
[2025-11-25 20:09:07] Set ATHENA_PROC_NUMBER=10
[2025-11-25 20:09:07] Set ATHENA_CORE_NUMBER=10
[2025-11-25 20:09:07] Starting ATLAS job with PandaID=6895401416
[2025-11-25 20:09:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:03:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:03:37] 2025-11-26 10:03:01,536 | INFO     | monitor loop #2143: job 0:6895401416 is in state 'finished'
[2025-11-26 05:03:37] 2025-11-26 10:03:01,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,499 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 05:03:37] 2025-11-26 10:03:02,513 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3293.3981041666666
[2025-11-26 05:03:37] 2025-11-26 10:03:02,526 | INFO     | time since job start (32025s) is within the limit (172800.0s)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,527 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895401416/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,530 | INFO     | extracted standard info from prmon json
[2025-11-26 05:03:37] 2025-11-26 10:03:02,531 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:03:37] 2025-11-26 10:03:02,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:03:37] 2025-11-26 10:03:02,551 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:03:37] 2025-11-26 10:03:02,552 | INFO     | sum of square deviations: 44870647079.87827
[2025-11-26 05:03:37] 2025-11-26 10:03:02,557 | INFO     | sum of deviations: 304434427794.6286
[2025-11-26 05:03:37] 2025-11-26 10:03:02,557 | INFO     | mean x: 1764135370.1752381
[2025-11-26 05:03:37] 2025-11-26 10:03:02,557 | INFO     | mean y: 3147106.9714285713
[2025-11-26 05:03:37] 2025-11-26 10:03:02,557 | INFO     | intersect: -11966003705.930574
[2025-11-26 05:03:37] 2025-11-26 10:03:02,558 | INFO     | chi2: 8.154002018378327
[2025-11-26 05:03:37] 2025-11-26 10:03:02,558 | INFO     | sum of square deviations: 43601006797.90584
[2025-11-26 05:03:37] 2025-11-26 10:03:02,563 | INFO     | sum of deviations: 516885341070.64417
[2025-11-26 05:03:37] 2025-11-26 10:03:02,564 | INFO     | mean x: 1764135217.6865385
[2025-11-26 05:03:37] 2025-11-26 10:03:02,564 | INFO     | mean y: 3172610.1634615385
[2025-11-26 05:03:37] 2025-11-26 10:03:02,564 | INFO     | intersect: -20910464497.235584
[2025-11-26 05:03:37] 2025-11-26 10:03:02,564 | INFO     | chi2: 4.263522168156194
[2025-11-26 05:03:37] 2025-11-26 10:03:02,564 | INFO     | current chi2=4.263522168156194 (change=47.712520078525486 %)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,565 | INFO     | sum of square deviations: 42355553015.79813
[2025-11-26 05:03:37] 2025-11-26 10:03:02,570 | INFO     | sum of deviations: 659041729642.9711
[2025-11-26 05:03:37] 2025-11-26 10:03:02,570 | INFO     | mean x: 1764135065.1980584
[2025-11-26 05:03:37] 2025-11-26 10:03:02,571 | INFO     | mean y: 3189967.9708737866
[2025-11-26 05:03:37] 2025-11-26 10:03:02,571 | INFO     | intersect: -27446307014.35617
[2025-11-26 05:03:37] 2025-11-26 10:03:02,571 | INFO     | chi2: 2.0686213240211515
[2025-11-26 05:03:37] 2025-11-26 10:03:02,571 | INFO     | current chi2=2.0686213240211515 (change=51.48092955933312 %)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,571 | INFO     | sum of square deviations: 41133865295.49794
[2025-11-26 05:03:37] 2025-11-26 10:03:02,576 | INFO     | sum of deviations: 657831949988.2234
[2025-11-26 05:03:37] 2025-11-26 10:03:02,576 | INFO     | mean x: 1764134912.6980393
[2025-11-26 05:03:37] 2025-11-26 10:03:02,576 | INFO     | mean y: 3189806.4235294117
[2025-11-26 05:03:37] 2025-11-26 10:03:02,576 | INFO     | intersect: -28209678138.896244
[2025-11-26 05:03:37] 2025-11-26 10:03:02,577 | INFO     | chi2: 2.015834282173427
[2025-11-26 05:03:37] 2025-11-26 10:03:02,577 | INFO     | current chi2=2.015834282173427 (change=2.5517982066003575 %)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,577 | INFO     | right removable region: 509
[2025-11-26 05:03:37] 2025-11-26 10:03:02,577 | INFO     | sum of square deviations: 43600694114.64435
[2025-11-26 05:03:37] 2025-11-26 10:03:02,582 | INFO     | sum of deviations: 169071003448.00946
[2025-11-26 05:03:37] 2025-11-26 10:03:02,582 | INFO     | mean x: 1764135522.6826923
[2025-11-26 05:03:37] 2025-11-26 10:03:02,582 | INFO     | mean y: 3163314.678846154
[2025-11-26 05:03:37] 2025-11-26 10:03:02,582 | INFO     | intersect: -6837648949.7768755
[2025-11-26 05:03:37] 2025-11-26 10:03:02,583 | INFO     | chi2: 6.374195956121504
[2025-11-26 05:03:37] 2025-11-26 10:03:02,583 | INFO     | current chi2=6.374195956121504 (change=21.827392956799777 %)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,583 | INFO     | left removable region: 10
[2025-11-26 05:03:37] 2025-11-26 10:03:02,583 | INFO     | sum of square deviations: 38529173556.32442
[2025-11-26 05:03:37] 2025-11-26 10:03:02,588 | INFO     | sum of deviations: 482577969692.6472
[2025-11-26 05:03:37] 2025-11-26 10:03:02,588 | INFO     | mean x: 1764135187.208417
[2025-11-26 05:03:37] 2025-11-26 10:03:02,588 | INFO     | mean y: 3211647.4649298596
[2025-11-26 05:03:37] 2025-11-26 10:03:02,589 | INFO     | intersect: -22092584818.604168
[2025-11-26 05:03:37] 2025-11-26 10:03:02,589 | INFO     | chi2: 0.12881160367790367
[2025-11-26 05:03:37] 2025-11-26 10:03:02,589 | INFO     | current memory leak: 12.53 B/s (using 499 data points, chi2=0.13)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | could have reported an average CPU frequency of 3331 MHz (21 samples)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | ..............................
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | . Timing measurements:
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | . get job = 0 s
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | . initial setup = 1 s
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | . payload setup = 7 s
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | . stage-in = 0 s
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | . payload execution = 31988 s
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | . stage-out = 4 s
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | . log creation = 0 s
[2025-11-26 05:03:37] 2025-11-26 10:03:02,590 | INFO     | ..............................
[2025-11-26 05:03:37] 2025-11-26 10:03:02,660 | INFO     | 
[2025-11-26 05:03:37] 2025-11-26 10:03:02,660 | INFO     | job summary report
[2025-11-26 05:03:37] 2025-11-26 10:03:02,660 | INFO     | --------------------------------------------------
[2025-11-26 05:03:37] 2025-11-26 10:03:02,660 | INFO     | PanDA job id: 6895401416
[2025-11-26 05:03:37] 2025-11-26 10:03:02,660 | INFO     | task id: 47556149
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | errors: (none)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | pilot state: finished 
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | transexitcode: 0
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | exeerrorcode: 0
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | exeerrordiag: 
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | exitcode: 0
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | exitmsg: OK
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | cpuconsumptiontime: 186543 s
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | nevents: 1000
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | neventsw: 0
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | pid: 2532449
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | pgrp: 2532449
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | corecount: 10
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | event service: False
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 31996: 2324016, 31997: 2324015, 32001: 2333249, 32009: 2333439}
[2025-11-26 05:03:37] 2025-11-26 10:03:02,661 | INFO     | --------------------------------------------------
[2025-11-26 05:03:37] 2025-11-26 10:03:02,662 | INFO     | 
[2025-11-26 05:03:37] 2025-11-26 10:03:02,662 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 05:03:37] 2025-11-26 10:03:02,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,683 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:03:37] 2025-11-26 10:03:02,683 | INFO     | job 6895401416 has completed (purged errors)
[2025-11-26 05:03:37] 2025-11-26 10:03:02,683 | INFO     | overall cleanup function is called
[2025-11-26 05:03:37] 2025-11-26 10:03:03,701 | INFO     | --- collectZombieJob: --- 10, [2532449]
[2025-11-26 05:03:37] 2025-11-26 10:03:03,701 | INFO     | zombie collector waiting for pid 2532449
[2025-11-26 05:03:37] 2025-11-26 10:03:03,701 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:03:37] 2025-11-26 10:03:03,701 | INFO     | collected zombie processes
[2025-11-26 05:03:37] 2025-11-26 10:03:03,701 | INFO     | will attempt to kill all subprocesses of pid=2532449
[2025-11-26 05:03:37] 2025-11-26 10:03:04,351 | INFO     | process IDs to be killed: [2532449] (in reverse order)
[2025-11-26 05:03:37] 2025-11-26 10:03:04,595 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:03:37] 2025-11-26 10:03:04,595 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:03:37] 2025-11-26 10:03:04,632 | INFO     | did not find any defunct processes belonging to 2532449
[2025-11-26 05:03:37] 2025-11-26 10:03:04,655 | INFO     | did not find any defunct processes belonging to 2532449
[2025-11-26 05:03:37] 2025-11-26 10:03:04,656 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:03:37] 2025-11-26 10:03:04,656 | INFO     | ready for new job
[2025-11-26 05:03:37] 2025-11-26 10:03:04,657 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:03:37] 2025-11-26 10:03:04,659 | INFO     | ***************************************
[2025-11-26 05:03:37] 2025-11-26 10:03:04,662 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:03:37] 2025-11-26 10:03:04,662 | INFO     | ***************************************
[2025-11-26 05:03:37] 2025-11-26 10:03:04,663 | INFO     | 
[2025-11-26 05:03:37] 2025-11-26 10:03:04,667 | INFO     | architecture information:
[2025-11-26 05:03:37] 2025-11-26 10:03:04,668 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:03:37] 2025-11-26 10:03:04,688 | INFO     | cat /etc/os-release:
[2025-11-26 05:03:37] NAME="CentOS Linux"
[2025-11-26 05:03:37] VERSION="7 (Core)"
[2025-11-26 05:03:37] ID="centos"
[2025-11-26 05:03:37] ID_LIKE="rhel fedora"
[2025-11-26 05:03:37] VERSION_ID="7"
[2025-11-26 05:03:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:03:37] ANSI_COLOR="0;31"
[2025-11-26 05:03:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:03:37] HOME_URL="https://www.centos.org/"
[2025-11-26 05:03:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:03:37] 
[2025-11-26 05:03:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:03:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:03:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:03:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:03:37] 
[2025-11-26 05:03:37] 2025-11-26 10:03:04,688 | INFO     | ***************************************
[2025-11-26 05:03:37] 2025-11-26 10:03:05,191 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 05:03:37] 2025-11-26 10:03:05,208 | INFO     | sufficient remaining disk space (117498183680 B)
[2025-11-26 05:03:37] 2025-11-26 10:03:05,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:03:37] 2025-11-26 10:03:05,209 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:03:37] 2025-11-26 10:03:05,209 | INFO     | update_server=False
[2025-11-26 05:03:37] 2025-11-26 10:03:05,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:03:37] 2025-11-26 10:03:05,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:03:37] 2025-11-26 10:03:05,209 | INFO     | aborting loop
[2025-11-26 05:03:37] 2025-11-26 10:03:05,672 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:03:37] 2025-11-26 10:03:05,729 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:03:37] 2025-11-26 10:03:05,830 | INFO     | all data control threads have been joined
[2025-11-26 05:03:37] 2025-11-26 10:03:05,944 | INFO     | all job control threads have been joined
[2025-11-26 05:03:37] 2025-11-26 10:03:06,222 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:06,222 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:06,239 | INFO     | all payload control threads have been joined
[2025-11-26 05:03:37] 2025-11-26 10:03:06,502 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:06,510 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:06,734 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:06,808 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:06,837 | INFO     | [data] control thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:06,949 | INFO     | [job] control thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:07,245 | INFO     | [payload] control thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:07,259 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:07,414 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:07,530 | INFO     | [job] validate thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:07,682 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:07,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:03:37] 2025-11-26 10:03:07,733 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:08,690 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:09,746 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:03:37] 2025-11-26 10:03:12,547 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:03:37] 2025-11-26 10:03:13,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140095229658944)>', '<ExcThread(monitor, started 140094870624000)>']
[2025-11-26 05:03:37] 2025-11-26 10:03:18,786 | INFO     | all workflow threads have been joined
[2025-11-26 05:03:37] 2025-11-26 10:03:18,786 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:03:37] 2025-11-26 10:03:18,786 | INFO     | traces error code: 0
[2025-11-26 05:03:37] 2025-11-26 10:03:18,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:03:37] 2025-11-26 10:03:36,486 | INFO     | PID=2496676 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:03:37] 2025-11-26 10:03:36,486 | INFO     | .. there are 56 such processes running
[2025-11-26 05:03:37] 2025-11-26 10:03:36,487 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:03:37] 2025-11-26 10:03:36,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:03:37] 2025-11-26 10:03:36,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:03:37] 2025-11-26 10:03:36,487 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:03:37] 2025-11-26 10:03:36,488 | INFO     | [monitor] control thread has ended
[2025-11-26 05:03:37] 2025-11-26 10:03:36,667 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:03:37] 2025-11-26 10:03:36,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:03:37] 2025-11-26 10:03:36,679 [wrapper] pilotpid: 2496676
[2025-11-26 05:03:37] 2025-11-26 10:03:36,682 [wrapper] Pilot exit status: 0
[2025-11-26 05:03:37] 2025-11-26 10:03:36,696 [wrapper] pandaids: 6895401416 6895401416
[2025-11-26 05:03:37] 2025-11-26 10:03:36,835 [wrapper] cleanup supervisor_pilot 4184399 2496677
[2025-11-26 05:03:37] 2025-11-26 10:03:36,838 [wrapper] Test setup, not cleaning
[2025-11-26 05:03:37] 2025-11-26 10:03:36,841 [wrapper] apfmon messages muted
[2025-11-26 05:03:37] 2025-11-26 10:03:36,843 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:03:37] 2025-11-26 10:03:36,845 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:03:37]  *** Error codes and diagnostics ***
[2025-11-26 05:03:37]     "exeErrorCode": 0,
[2025-11-26 05:03:37]     "exeErrorDiag": "",
[2025-11-26 05:03:37]     "pilotErrorCode": 0,
[2025-11-26 05:03:37]     "pilotErrorDiag": "",
[2025-11-26 05:03:37]  *** Listing of results directory ***
[2025-11-26 05:03:37] total 1722896
[2025-11-26 05:03:37] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 01:55 pilot3.tar.gz
[2025-11-26 05:03:37] -rwx------. 1 boincer umatlas     36292 Nov 24 02:29 runpilot2-wrapper.sh
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 02:29 queuedata.json
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:03:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:28 run_atlas
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:28 job.xml
[2025-11-26 05:03:37] -rw-r--r--. 3 boincer umatlas 412299287 Nov 25 18:28 EVNT.47483658._001261.pool.root.1
[2025-11-26 05:03:37] -rw-r--r--. 3 boincer umatlas 412299287 Nov 25 18:28 ATLAS.root_0
[2025-11-26 05:03:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:28 start_atlas.sh
[2025-11-26 05:03:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:28 shared
[2025-11-26 05:03:37] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 18:28 input.tar.gz
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:28 boinc_lockfile
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 20:09 pandaJob.out
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas        57 Nov 25 20:09 setup.sh.local
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas    991877 Nov 25 20:09 agis_schedconf.cvmfs.json
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas       533 Nov 26 04:51 boinc_task_state.xml
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 04:55 init_data.xml
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas 922979474 Nov 26 05:00 HITS.47556149._002480.pool.root.1
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas      1063 Nov 26 05:02 memory_monitor_summary.json
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas   1516240 Nov 26 05:02 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas   2014025 Nov 26 05:02 log.47556149._002480.job.log.tgz.1
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas      7929 Nov 26 05:03 heartbeat.json
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 05:03 boinc_mmap_file
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas        29 Nov 26 05:03 wrapper_checkpoint.txt
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas        96 Nov 26 05:03 pilot_heartbeat.json
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas       823 Nov 26 05:03 pilotlog.txt
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas   4359061 Nov 26 05:03 log.47556149._002480.job.log.1
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas       353 Nov 26 05:03 output.list
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas       620 Nov 26 05:03 runtime_log
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas   6389760 Nov 26 05:03 result.tar.gz
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas       789 Nov 26 05:03 sWcLDmhBgh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLWLKDm6x98Qm.diag
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas      9430 Nov 26 05:03 runtime_log.err
[2025-11-26 05:03:37] -rw-r--r--. 1 boincer umatlas     23504 Nov 26 05:03 stderr.txt
[2025-11-26 05:03:37] HITS file was successfully produced:
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas 922979474 Nov 26 05:00 shared/HITS.pool.root.1
[2025-11-26 05:03:37]  *** Contents of shared directory: ***
[2025-11-26 05:03:37] total 1310832
[2025-11-26 05:03:37] -rw-r--r--. 3 boincer umatlas 412299287 Nov 25 18:28 ATLAS.root_0
[2025-11-26 05:03:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:28 start_atlas.sh
[2025-11-26 05:03:37] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 18:28 input.tar.gz
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas 922979474 Nov 26 05:00 HITS.pool.root.1
[2025-11-26 05:03:37] -rw-------. 1 boincer umatlas   6389760 Nov 26 05:03 result.tar.gz
05:03:39 (2477719): run_atlas exited; CPU time 186807.984743
05:03:39 (2477719): called boinc_finish(0)

</stderr_txt>
]]>

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