Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:42:00 (2922863): wrapper (7.7.26015): starting
12:42:00 (2922863): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:42:00] Arguments: --nthreads 8
[2025-11-25 12:42:00] Threads: 8
[2025-11-25 12:42:00] Checking for CVMFS
[2025-11-25 12:42:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:42:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:42:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:42:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:42:01] 2.13.3.0 10954 28922 394592 153291 0 384 21763738 32935937 21558 16776704 26 128027805 99.458 190000602 39656 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 12:42:01] CVMFS is ok
[2025-11-25 12:42:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:42:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:42:01] Further information can be found at the LHC@home message board.
[2025-11-25 12:42:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:42:01] Checking for apptainer binary...
[2025-11-25 12:42:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:42:01] Running /usr/bin/apptainer --version
[2025-11-25 12:42:01] apptainer version 1.4.4-1.el9
[2025-11-25 12:42:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:42:01] c7-11-13.aglt2.org
[2025-11-25 12:42:01] apptainer works
[2025-11-25 12:42:01] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:42:01] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:42:01] Starting ATLAS job with PandaID=6895418041
[2025-11-25 12:42:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:15:40]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:15:40] 2025-11-26 11:14:24,028 | INFO     | monitor loop #3928: job 0:6895418041 is in state 'finished'
[2025-11-26 06:15:40] 2025-11-26 11:14:24,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:15:40] 2025-11-26 11:14:24,308 | INFO     | time since job start (63123s) is within the limit (172800.0s)
[2025-11-26 06:15:40] 2025-11-26 11:14:24,308 | INFO     | 63126s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 06:15:40] 2025-11-26 11:14:26,322 | INFO     | time since job start (63125s) is within the limit (172800.0s)
[2025-11-26 06:15:40] 2025-11-26 11:14:26,542 | INFO     | monitor loop #3929: job 0:6895418041 is in state 'finished'
[2025-11-26 06:15:40] 2025-11-26 11:14:26,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:15:40] 2025-11-26 11:14:28,328 | INFO     | time since job start (63127s) is within the limit (172800.0s)
[2025-11-26 06:15:40] 2025-11-26 11:14:29,047 | INFO     | monitor loop #3930: job 0:6895418041 is in state 'finished'
[2025-11-26 06:15:40] 2025-11-26 11:14:29,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:15:40] 2025-11-26 11:14:30,355 | INFO     | time since job start (63129s) is within the limit (172800.0s)
[2025-11-26 06:15:40] 2025-11-26 11:14:31,576 | INFO     | monitor loop #3931: job 0:6895418041 is in state 'finished'
[2025-11-26 06:15:40] 2025-11-26 11:14:31,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:15:40] 2025-11-26 11:14:32,372 | INFO     | time since job start (63131s) is within the limit (172800.0s)
[2025-11-26 06:15:40] 2025-11-26 11:14:34,087 | INFO     | monitor loop #3932: job 0:6895418041 is in state 'finished'
[2025-11-26 06:15:40] 2025-11-26 11:14:34,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:15:40] 2025-11-26 11:14:34,380 | INFO     | time since job start (63133s) is within the limit (172800.0s)
[2025-11-26 06:15:40] 2025-11-26 11:14:35,969 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 06:15:40] 2025-11-26 11:14:35,973 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3271.5919218750005
[2025-11-26 06:15:40] 2025-11-26 11:14:35,985 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895418041/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:15:40] 2025-11-26 11:14:35,986 | INFO     | extracted standard info from prmon json
[2025-11-26 06:15:40] 2025-11-26 11:14:35,986 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:15:40] 2025-11-26 11:14:35,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:15:40] 2025-11-26 11:14:36,001 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:15:40] 2025-11-26 11:14:36,002 | INFO     | sum of square deviations: 342812067727.67065
[2025-11-26 06:15:40] 2025-11-26 11:14:36,031 | INFO     | sum of deviations: 713647856397.0115
[2025-11-26 06:15:40] 2025-11-26 11:14:36,031 | INFO     | mean x: 1764124100.4187622
[2025-11-26 06:15:40] 2025-11-26 11:14:36,031 | INFO     | mean y: 2891308.64893617
[2025-11-26 06:15:40] 2025-11-26 11:14:36,032 | INFO     | intersect: -3669568039.2007265
[2025-11-26 06:15:40] 2025-11-26 11:14:36,033 | INFO     | chi2: 16.59204131841567
[2025-11-26 06:15:40] 2025-11-26 11:14:36,034 | INFO     | sum of square deviations: 337863770736.6785
[2025-11-26 06:15:40] 2025-11-26 11:14:36,053 | INFO     | sum of deviations: 1072942094560.6022
[2025-11-26 06:15:40] 2025-11-26 11:14:36,053 | INFO     | mean x: 1764123947.9280856
[2025-11-26 06:15:40] 2025-11-26 11:14:36,053 | INFO     | mean y: 2902380.3459669584
[2025-11-26 06:15:40] 2025-11-26 11:14:36,054 | INFO     | intersect: -5599363999.465663
[2025-11-26 06:15:40] 2025-11-26 11:14:36,054 | INFO     | chi2: 13.085578307533233
[2025-11-26 06:15:40] 2025-11-26 11:14:36,055 | INFO     | current chi2=13.085578307533233 (change=21.13340332024475 %)
[2025-11-26 06:15:40] 2025-11-26 11:14:36,055 | INFO     | right removable region: 1028
[2025-11-26 06:15:40] 2025-11-26 11:14:36,056 | INFO     | sum of square deviations: 337862560496.67847
[2025-11-26 06:15:40] 2025-11-26 11:14:36,076 | INFO     | sum of deviations: 401712850671.2086
[2025-11-26 06:15:40] 2025-11-26 11:14:36,077 | INFO     | mean x: 1764124252.9280856
[2025-11-26 06:15:40] 2025-11-26 11:14:36,077 | INFO     | mean y: 2900910.705539359
[2025-11-26 06:15:40] 2025-11-26 11:14:36,077 | INFO     | intersect: -2094612887.6276276
[2025-11-26 06:15:40] 2025-11-26 11:14:36,078 | INFO     | chi2: 14.028632239929577
[2025-11-26 06:15:40] 2025-11-26 11:14:36,078 | INFO     | current chi2=14.028632239929577 (change=15.44963051436559 %)
[2025-11-26 06:15:40] 2025-11-26 11:14:36,078 | INFO     | left removable region: 10
[2025-11-26 06:15:40] 2025-11-26 11:14:36,079 | INFO     | sum of square deviations: 327143865226.7239
[2025-11-26 06:15:40] 2025-11-26 11:14:36,099 | INFO     | sum of deviations: 759119315916.415
[2025-11-26 06:15:40] 2025-11-26 11:14:36,099 | INFO     | mean x: 1764124222.4390962
[2025-11-26 06:15:40] 2025-11-26 11:14:36,099 | INFO     | mean y: 2916858.974459725
[2025-11-26 06:15:40] 2025-11-26 11:14:36,099 | INFO     | intersect: -4090636208.271469
[2025-11-26 06:15:40] 2025-11-26 11:14:36,100 | INFO     | chi2: 9.66509568598231
[2025-11-26 06:15:40] 2025-11-26 11:14:36,100 | INFO     | current memory leak: 2.32 B/s (using 1018 data points, chi2=9.67)
[2025-11-26 06:15:40] 2025-11-26 11:14:36,101 | INFO     | could have reported an average CPU frequency of 3283 MHz (38 samples)
[2025-11-26 06:15:40] 2025-11-26 11:14:36,101 | INFO     | ..............................
[2025-11-26 06:15:40] 2025-11-26 11:14:36,101 | INFO     | . Timing measurements:
[2025-11-26 06:15:40] 2025-11-26 11:14:36,103 | INFO     | . get job = 0 s
[2025-11-26 06:15:40] 2025-11-26 11:14:36,103 | INFO     | . initial setup = 3 s
[2025-11-26 06:15:40] 2025-11-26 11:14:36,103 | INFO     | . payload setup = 11 s
[2025-11-26 06:15:40] 2025-11-26 11:14:36,103 | INFO     | . stage-in = 0 s
[2025-11-26 06:15:40] 2025-11-26 11:14:36,103 | INFO     | . payload execution = 63060 s
[2025-11-26 06:15:40] 2025-11-26 11:14:36,103 | INFO     | . stage-out = 6 s
[2025-11-26 06:15:40] 2025-11-26 11:14:36,103 | INFO     | . log creation = 2 s
[2025-11-26 06:15:40] 2025-11-26 11:14:36,103 | INFO     | ..............................
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | 
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | job summary report
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | --------------------------------------------------
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | PanDA job id: 6895418041
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | task id: 47556149
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | errors: (none)
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | pilot state: finished 
[2025-11-26 06:15:40] 2025-11-26 11:14:36,355 | INFO     | transexitcode: 0
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | exeerrorcode: 0
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | exeerrordiag: 
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | exitcode: 0
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | exitmsg: OK
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | cpuconsumptiontime: 200016 s
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | nevents: 1000
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | neventsw: 0
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | pid: 2933881
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | pgrp: 2933881
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | corecount: 8
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | event service: False
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | sizes: {0: 2284144, 1: 2284343, 11: 2284343, 13: 2284633, 22: 2284689, 63076: 2339412, 63083: 2348462, 63106: 2348652}
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | --------------------------------------------------
[2025-11-26 06:15:40] 2025-11-26 11:14:36,356 | INFO     | 
[2025-11-26 06:15:40] 2025-11-26 11:14:36,357 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 06:15:40] 2025-11-26 11:14:36,377 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,377 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,377 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,378 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,379 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:15:40] 2025-11-26 11:14:36,379 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,379 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:15:40] 2025-11-26 11:14:36,379 | INFO     | job 6895418041 has completed (purged errors)
[2025-11-26 06:15:40] 2025-11-26 11:14:36,379 | INFO     | overall cleanup function is called
[2025-11-26 06:15:40] 2025-11-26 11:14:37,397 | INFO     | --- collectZombieJob: --- 10, [2933881]
[2025-11-26 06:15:40] 2025-11-26 11:14:37,397 | INFO     | zombie collector waiting for pid 2933881
[2025-11-26 06:15:40] 2025-11-26 11:14:37,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:15:40] 2025-11-26 11:14:37,397 | INFO     | collected zombie processes
[2025-11-26 06:15:40] 2025-11-26 11:14:37,397 | INFO     | will attempt to kill all subprocesses of pid=2933881
[2025-11-26 06:15:40] 2025-11-26 11:14:37,893 | INFO     | process IDs to be killed: [2933881] (in reverse order)
[2025-11-26 06:15:40] 2025-11-26 11:14:38,169 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:15:40] 2025-11-26 11:14:38,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:15:40] 2025-11-26 11:14:38,188 | INFO     | did not find any defunct processes belonging to 2933881
[2025-11-26 06:15:40] 2025-11-26 11:14:38,205 | INFO     | did not find any defunct processes belonging to 2933881
[2025-11-26 06:15:40] 2025-11-26 11:14:38,207 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:15:40] 2025-11-26 11:14:38,207 | INFO     | ready for new job
[2025-11-26 06:15:40] 2025-11-26 11:14:38,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:15:40] 2025-11-26 11:14:38,212 | INFO     | ***************************************
[2025-11-26 06:15:40] 2025-11-26 11:14:38,212 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:15:40] 2025-11-26 11:14:38,212 | INFO     | ***************************************
[2025-11-26 06:15:40] 2025-11-26 11:14:38,212 | INFO     | 
[2025-11-26 06:15:40] 2025-11-26 11:14:38,215 | INFO     | architecture information:
[2025-11-26 06:15:40] 2025-11-26 11:14:38,216 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:15:40] 2025-11-26 11:14:38,449 | INFO     | cat /etc/os-release:
[2025-11-26 06:15:40] NAME="CentOS Linux"
[2025-11-26 06:15:40] VERSION="7 (Core)"
[2025-11-26 06:15:40] ID="centos"
[2025-11-26 06:15:40] ID_LIKE="rhel fedora"
[2025-11-26 06:15:40] VERSION_ID="7"
[2025-11-26 06:15:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:15:40] ANSI_COLOR="0;31"
[2025-11-26 06:15:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:15:40] HOME_URL="https://www.centos.org/"
[2025-11-26 06:15:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:15:40] 
[2025-11-26 06:15:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:15:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:15:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:15:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:15:40] 
[2025-11-26 06:15:40] 2025-11-26 11:14:38,449 | INFO     | ***************************************
[2025-11-26 06:15:40] 2025-11-26 11:14:38,953 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 06:15:40] 2025-11-26 11:14:39,185 | INFO     | sufficient remaining disk space (86628106240 B)
[2025-11-26 06:15:40] 2025-11-26 11:14:39,185 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:15:40] 2025-11-26 11:14:39,186 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:15:40] 2025-11-26 11:14:39,186 | INFO     | update_server=False
[2025-11-26 06:15:40] 2025-11-26 11:14:39,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:15:40] 2025-11-26 11:14:39,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:15:40] 2025-11-26 11:14:39,506 | INFO     | all job control threads have been joined
[2025-11-26 06:15:40] 2025-11-26 11:14:40,072 | INFO     | all payload control threads have been joined
[2025-11-26 06:15:40] 2025-11-26 11:14:40,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:15:40] 2025-11-26 11:14:40,113 | INFO     | aborting loop
[2025-11-26 06:15:40] 2025-11-26 11:14:40,192 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:40,230 | INFO     | all data control threads have been joined
[2025-11-26 06:15:40] 2025-11-26 11:14:40,335 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:40,513 | INFO     | [job] control thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:40,644 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:40,668 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:40,790 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,078 | INFO     | [payload] control thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,118 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,194 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,236 | INFO     | [data] control thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,369 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:15:40] 2025-11-26 11:14:41,547 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,547 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,548 | INFO     | [job] validate thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,554 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:41,555 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:15:40] 2025-11-26 11:14:42,379 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:14:45,583 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:15:40] 2025-11-26 11:15:08,345 | INFO     | PID=2926803 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 06:15:40] 2025-11-26 11:15:08,345 | INFO     | .. there are 35 such processes running
[2025-11-26 06:15:40] 2025-11-26 11:15:08,347 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:15:40] 2025-11-26 11:15:08,347 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:15:40] 2025-11-26 11:15:08,347 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:15:40] 2025-11-26 11:15:12,459 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:15:40] 2025-11-26 11:15:13,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755623913280)>', '<ExcThread(monitor, started 139755140409088)>']
[2025-11-26 06:15:40] 2025-11-26 11:15:14,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:15:40] 2025-11-26 11:15:14,381 | INFO     | [monitor] control thread has ended
[2025-11-26 06:15:40] 2025-11-26 11:15:18,512 | INFO     | all workflow threads have been joined
[2025-11-26 06:15:40] 2025-11-26 11:15:18,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:15:40] 2025-11-26 11:15:18,514 | INFO     | traces error code: 0
[2025-11-26 06:15:40] 2025-11-26 11:15:18,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:15:40] 2025-11-26 11:15:18,647 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:15:40] 2025-11-26 11:15:18,650 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:15:40] 2025-11-26 11:15:18,653 [wrapper] pilotpid: 2926803
[2025-11-26 06:15:40] 2025-11-26 11:15:18,691 [wrapper] Pilot exit status: 0
[2025-11-26 06:15:40] 2025-11-26 11:15:18,733 [wrapper] pandaids: 6895418041
[2025-11-26 06:15:40] 2025-11-26 11:15:20,053 [wrapper] cleanup supervisor_pilot 2422610 2926804
[2025-11-26 06:15:40] 2025-11-26 11:15:20,105 [wrapper] Test setup, not cleaning
[2025-11-26 06:15:40] 2025-11-26 11:15:20,145 [wrapper] apfmon messages muted
[2025-11-26 06:15:40] 2025-11-26 11:15:20,191 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:15:40] 2025-11-26 11:15:20,231 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:15:40]  *** Error codes and diagnostics ***
[2025-11-26 06:15:40]     "exeErrorCode": 0,
[2025-11-26 06:15:40]     "exeErrorDiag": "",
[2025-11-26 06:15:40]     "pilotErrorCode": 0,
[2025-11-26 06:15:40]     "pilotErrorDiag": "",
[2025-11-26 06:15:40]  *** Listing of results directory ***
[2025-11-26 06:15:40] total 1327040
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 03:46 pilot3.tar.gz
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 03:50 queuedata.json
[2025-11-26 06:15:40] -rwx------. 1 boincer umatlas     36292 Nov 24 03:51 runpilot2-wrapper.sh
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas       100 Nov 25 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:15:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 12:41 run_atlas
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas       105 Nov 25 12:41 job.xml
[2025-11-26 06:15:40] -rw-r--r--. 2 boincer umatlas 410313832 Nov 25 12:42 EVNT.47483658._001283.pool.root.1
[2025-11-26 06:15:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:42 start_atlas.sh
[2025-11-26 06:15:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 12:42 shared
[2025-11-26 06:15:40] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 12:42 input.tar.gz
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas         0 Nov 25 12:42 boinc_lockfile
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 12:42 pandaJob.out
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas        57 Nov 25 12:42 setup.sh.local
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas    991543 Nov 25 12:42 agis_schedconf.cvmfs.json
[2025-11-26 06:15:40] drwx------. 5 boincer umatlas      4096 Nov 25 12:42 pilot3
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas       533 Nov 26 04:55 boinc_task_state.xml
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas 923944436 Nov 26 06:12 HITS.47556149._002694.pool.root.1
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas      6905 Nov 26 06:13 init_data.xml
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas      1049 Nov 26 06:14 memory_monitor_summary.json
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas   1516240 Nov 26 06:14 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas   2172941 Nov 26 06:14 log.47556149._002694.job.log.tgz.1
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas      8577 Nov 26 06:14 heartbeat.json
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas        95 Nov 26 06:15 pilot_heartbeat.json
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas      4824 Nov 26 06:15 pilotlog.txt
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas   8175774 Nov 26 06:15 log.47556149._002694.job.log.1
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas       353 Nov 26 06:15 output.list
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas       620 Nov 26 06:15 runtime_log
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas  10373120 Nov 26 06:15 result.tar.gz
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 06:15 runtime_log.err
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas       660 Nov 26 06:15 l84LDm4Shh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwYLKDm2UmCzn.diag
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas        29 Nov 26 06:15 wrapper_checkpoint.txt
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 06:15 boinc_mmap_file
[2025-11-26 06:15:40] -rw-r--r--. 1 boincer umatlas     21789 Nov 26 06:15 stderr.txt
[2025-11-26 06:15:40] HITS file was successfully produced:
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas 923944436 Nov 26 06:12 shared/HITS.pool.root.1
[2025-11-26 06:15:40]  *** Contents of shared directory: ***
[2025-11-26 06:15:40] total 1313728
[2025-11-26 06:15:40] -rw-r--r--. 2 boincer umatlas 410313832 Nov 25 12:42 ATLAS.root_0
[2025-11-26 06:15:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:42 start_atlas.sh
[2025-11-26 06:15:40] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 12:42 input.tar.gz
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas 923944436 Nov 26 06:12 HITS.pool.root.1
[2025-11-26 06:15:40] -rw-------. 1 boincer umatlas  10373120 Nov 26 06:15 result.tar.gz
06:15:41 (2922863): run_atlas exited; CPU time 200699.853792
06:15:41 (2922863): called boinc_finish(0)

</stderr_txt>
]]>

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