Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:49:44 (1522912): wrapper (7.7.26015): starting
14:49:44 (1522912): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 14:49:44] Arguments: --nthreads 8
[2025-11-25 14:49:44] Threads: 8
[2025-11-25 14:49:44] Checking for CVMFS
[2025-11-25 14:49:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:49:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:49:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:49:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:49:45] 2.13.2.0 3557600 21849 213976 153295 3 560 25946867 40960000 35950 16776704 0 212328123 99.679 184690088 49095 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 14:49:45] CVMFS is ok
[2025-11-25 14:49:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:49:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:49:45] Further information can be found at the LHC@home message board.
[2025-11-25 14:49:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:49:45] Checking for apptainer binary...
[2025-11-25 14:49:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:49:45] Running /usr/bin/apptainer --version
[2025-11-25 14:49:46] apptainer version 1.4.4-1.el9
[2025-11-25 14:49:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:49:46] c-208-40.aglt2.org
[2025-11-25 14:49:46] apptainer works
[2025-11-25 14:49:46] Set ATHENA_PROC_NUMBER=8
[2025-11-25 14:49:46] Set ATHENA_CORE_NUMBER=8
[2025-11-25 14:49:46] Starting ATLAS job with PandaID=6895369427
[2025-11-25 14:49:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:42:39]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:42:40] 2025-11-26 09:40:57,281 | INFO     | .. there are 48 such processes running
[2025-11-26 04:42:40] 2025-11-26 09:40:57,389 | INFO     | monitor loop #2955: job 0:6895369427 is in state 'finished'
[2025-11-26 04:42:40] 2025-11-26 09:40:57,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:42:40] 2025-11-26 09:40:58,285 | INFO     | time since job start (49814s) is within the limit (172800.0s)
[2025-11-26 04:42:40] 2025-11-26 09:40:59,914 | INFO     | monitor loop #2956: job 0:6895369427 is in state 'finished'
[2025-11-26 04:42:40] 2025-11-26 09:40:59,914 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:42:40] 2025-11-26 09:41:00,293 | INFO     | time since job start (49816s) is within the limit (172800.0s)
[2025-11-26 04:42:40] 2025-11-26 09:41:02,303 | INFO     | time since job start (49818s) is within the limit (172800.0s)
[2025-11-26 04:42:40] 2025-11-26 09:41:02,419 | INFO     | monitor loop #2957: job 0:6895369427 is in state 'finished'
[2025-11-26 04:42:40] 2025-11-26 09:41:02,419 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:42:40] 2025-11-26 09:41:04,311 | INFO     | time since job start (49820s) is within the limit (172800.0s)
[2025-11-26 04:42:40] 2025-11-26 09:41:04,935 | INFO     | monitor loop #2958: job 0:6895369427 is in state 'finished'
[2025-11-26 04:42:40] 2025-11-26 09:41:04,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:42:40] 2025-11-26 09:41:06,320 | INFO     | time since job start (49822s) is within the limit (172800.0s)
[2025-11-26 04:42:40] 2025-11-26 09:41:07,445 | INFO     | monitor loop #2959: job 0:6895369427 is in state 'finished'
[2025-11-26 04:42:40] 2025-11-26 09:41:07,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:42:40] 2025-11-26 09:41:07,708 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 04:42:40] 2025-11-26 09:41:07,734 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9944296875
[2025-11-26 04:42:40] 2025-11-26 09:41:07,822 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895369427/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:42:40] 2025-11-26 09:41:07,822 | INFO     | extracted standard info from prmon json
[2025-11-26 04:42:40] 2025-11-26 09:41:07,822 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:42:40] 2025-11-26 09:41:07,822 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:42:40] 2025-11-26 09:41:07,868 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:42:40] 2025-11-26 09:41:07,884 | INFO     | sum of square deviations: 167250978053.76404
[2025-11-26 04:42:40] 2025-11-26 09:41:07,935 | INFO     | sum of deviations: 66295943268.00229
[2025-11-26 04:42:40] 2025-11-26 09:41:07,935 | INFO     | mean x: 1764125173.7616708
[2025-11-26 04:42:40] 2025-11-26 09:41:07,935 | INFO     | mean y: 2729609.262899263
[2025-11-26 04:42:40] 2025-11-26 09:41:07,935 | INFO     | intersect: -696544881.076778
[2025-11-26 04:42:40] 2025-11-26 09:41:07,936 | INFO     | chi2: 45.82336658986011
[2025-11-26 04:42:40] 2025-11-26 09:41:07,936 | INFO     | sum of square deviations: 164188483859.08044
[2025-11-26 04:42:40] 2025-11-26 09:41:07,976 | INFO     | sum of deviations: 331631152983.8691
[2025-11-26 04:42:40] 2025-11-26 09:41:07,976 | INFO     | mean x: 1764125021.2744129
[2025-11-26 04:42:40] 2025-11-26 09:41:07,977 | INFO     | mean y: 2742814.563658838
[2025-11-26 04:42:40] 2025-11-26 09:41:07,977 | INFO     | intersect: -3560471858.3670735
[2025-11-26 04:42:40] 2025-11-26 09:41:07,977 | INFO     | chi2: 41.81825825280158
[2025-11-26 04:42:40] 2025-11-26 09:41:07,977 | INFO     | current chi2=41.81825825280158 (change=8.740318826650308 %)
[2025-11-26 04:42:40] 2025-11-26 09:41:07,977 | INFO     | right removable region: 808
[2025-11-26 04:42:40] 2025-11-26 09:41:07,994 | INFO     | sum of square deviations: 164187410255.53027
[2025-11-26 04:42:40] 2025-11-26 09:41:08,017 | INFO     | sum of deviations: -251787831912.60434
[2025-11-26 04:42:40] 2025-11-26 09:41:08,034 | INFO     | mean x: 1764125326.2756488
[2025-11-26 04:42:40] 2025-11-26 09:41:08,034 | INFO     | mean y: 2745441.4870210136
[2025-11-26 04:42:40] 2025-11-26 09:41:08,034 | INFO     | intersect: 2708100806.0290475
[2025-11-26 04:42:40] 2025-11-26 09:41:08,035 | INFO     | chi2: 41.48870753421189
[2025-11-26 04:42:40] 2025-11-26 09:41:08,035 | INFO     | current chi2=41.48870753421189 (change=9.459494965626117 %)
[2025-11-26 04:42:40] 2025-11-26 09:41:08,035 | INFO     | left removable region: 10
[2025-11-26 04:42:40] 2025-11-26 09:41:08,035 | INFO     | sum of square deviations: 157580985120.89352
[2025-11-26 04:42:40] 2025-11-26 09:41:08,079 | INFO     | sum of deviations: -210696836295.07983
[2025-11-26 04:42:40] 2025-11-26 09:41:08,079 | INFO     | mean x: 1764125295.8057644
[2025-11-26 04:42:40] 2025-11-26 09:41:08,079 | INFO     | mean y: 2775011.9736842103
[2025-11-26 04:42:40] 2025-11-26 09:41:08,079 | INFO     | intersect: 2361534340.513468
[2025-11-26 04:42:40] 2025-11-26 09:41:08,080 | INFO     | chi2: 33.78566549373817
[2025-11-26 04:42:40] 2025-11-26 09:41:08,080 | INFO     | current memory leak: -1.34 B/s (using 798 data points, chi2=33.79)
[2025-11-26 04:42:40] 2025-11-26 09:41:08,080 | INFO     | could have reported an average CPU frequency of 3799 MHz (31 samples)
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | ..............................
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | . Timing measurements:
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | . get job = 0 s
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | . initial setup = 4 s
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | . payload setup = 38 s
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | . stage-in = 0 s
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | . payload execution = 49659 s
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | . stage-out = 12 s
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | . log creation = 4 s
[2025-11-26 04:42:40] 2025-11-26 09:41:08,081 | INFO     | ..............................
[2025-11-26 04:42:40] 2025-11-26 09:41:08,362 | INFO     | time since job start (49824s) is within the limit (172800.0s)
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | 
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | job summary report
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | --------------------------------------------------
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | PanDA job id: 6895369427
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | task id: 47556137
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | errors: (none)
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | pilot state: finished 
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | transexitcode: 0
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | exeerrorcode: 0
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | exeerrordiag: 
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | exitcode: 0
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | exitmsg: OK
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | cpuconsumptiontime: 144265 s
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | nevents: 1000
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | neventsw: 0
[2025-11-26 04:42:40] 2025-11-26 09:41:08,477 | INFO     | pid: 1552389
[2025-11-26 04:42:40] 2025-11-26 09:41:08,478 | INFO     | pgrp: 1552389
[2025-11-26 04:42:40] 2025-11-26 09:41:08,478 | INFO     | corecount: 8
[2025-11-26 04:42:40] 2025-11-26 09:41:08,478 | INFO     | event service: False
[2025-11-26 04:42:40] 2025-11-26 09:41:08,478 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 22: 2284320, 24: 2284610, 33: 2284638, 49703: 2332978, 49704: 2332977, 49717: 2342111, 49762: 2342301}
[2025-11-26 04:42:40] 2025-11-26 09:41:08,478 | INFO     | --------------------------------------------------
[2025-11-26 04:42:40] 2025-11-26 09:41:08,478 | INFO     | 
[2025-11-26 04:42:40] 2025-11-26 09:41:08,478 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 04:42:40] 2025-11-26 09:41:08,583 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,583 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,583 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,583 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,583 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,583 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,583 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,584 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,584 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,584 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,584 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | job 6895369427 has completed (purged errors)
[2025-11-26 04:42:40] 2025-11-26 09:41:08,600 | INFO     | overall cleanup function is called
[2025-11-26 04:42:40] 2025-11-26 09:41:09,639 | INFO     | --- collectZombieJob: --- 10, [1552389]
[2025-11-26 04:42:40] 2025-11-26 09:41:09,639 | INFO     | zombie collector waiting for pid 1552389
[2025-11-26 04:42:40] 2025-11-26 09:41:09,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:42:40] 2025-11-26 09:41:09,639 | INFO     | collected zombie processes
[2025-11-26 04:42:40] 2025-11-26 09:41:09,639 | INFO     | will attempt to kill all subprocesses of pid=1552389
[2025-11-26 04:42:40] 2025-11-26 09:41:12,469 | INFO     | process IDs to be killed: [1552389] (in reverse order)
[2025-11-26 04:42:40] 2025-11-26 09:41:15,653 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:42:40] 2025-11-26 09:41:15,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:42:40] 2025-11-26 09:41:15,807 | INFO     | did not find any defunct processes belonging to 1552389
[2025-11-26 04:42:40] 2025-11-26 09:41:15,931 | INFO     | did not find any defunct processes belonging to 1552389
[2025-11-26 04:42:40] 2025-11-26 09:41:15,944 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:42:40] 2025-11-26 09:41:15,944 | INFO     | ready for new job
[2025-11-26 04:42:40] 2025-11-26 09:41:15,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:42:40] 2025-11-26 09:41:15,958 | INFO     | ***************************************
[2025-11-26 04:42:40] 2025-11-26 09:41:15,958 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:42:40] 2025-11-26 09:41:15,958 | INFO     | ***************************************
[2025-11-26 04:42:40] 2025-11-26 09:41:15,958 | INFO     | 
[2025-11-26 04:42:40] 2025-11-26 09:41:15,979 | INFO     | architecture information:
[2025-11-26 04:42:40] 2025-11-26 09:41:15,986 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:42:40] 2025-11-26 09:41:16,065 | INFO     | cat /etc/os-release:
[2025-11-26 04:42:40] NAME="CentOS Linux"
[2025-11-26 04:42:40] VERSION="7 (Core)"
[2025-11-26 04:42:40] ID="centos"
[2025-11-26 04:42:40] ID_LIKE="rhel fedora"
[2025-11-26 04:42:40] VERSION_ID="7"
[2025-11-26 04:42:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:42:40] ANSI_COLOR="0;31"
[2025-11-26 04:42:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:42:40] HOME_URL="https://www.centos.org/"
[2025-11-26 04:42:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:42:40] 
[2025-11-26 04:42:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:42:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:42:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:42:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:42:40] 
[2025-11-26 04:42:40] 2025-11-26 09:41:16,065 | INFO     | ***************************************
[2025-11-26 04:42:40] 2025-11-26 09:41:16,569 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 04:42:40] 2025-11-26 09:41:16,644 | INFO     | sufficient remaining disk space (155357020160 B)
[2025-11-26 04:42:40] 2025-11-26 09:41:16,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:42:40] 2025-11-26 09:41:16,644 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:42:40] 2025-11-26 09:41:16,644 | INFO     | update_server=False
[2025-11-26 04:42:40] 2025-11-26 09:41:16,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:42:40] 2025-11-26 09:41:16,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:42:40] 2025-11-26 09:41:16,645 | INFO     | aborting loop
[2025-11-26 04:42:40] 2025-11-26 09:41:16,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:42:40] 2025-11-26 09:41:16,722 | INFO     | all job control threads have been joined
[2025-11-26 04:42:40] 2025-11-26 09:41:17,254 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:42:40] 2025-11-26 09:41:17,438 | INFO     | all data control threads have been joined
[2025-11-26 04:42:40] 2025-11-26 09:41:17,658 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:17,664 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:17,721 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:17,736 | INFO     | [job] control thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:17,771 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:17,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:42:40] 2025-11-26 09:41:17,776 | INFO     | all payload control threads have been joined
[2025-11-26 04:42:40] 2025-11-26 09:41:17,783 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:17,783 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:18,263 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:18,444 | INFO     | [data] control thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:18,777 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:18,782 | INFO     | [payload] control thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:18,785 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:18,864 | INFO     | [job] validate thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:19,173 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:19,269 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:20,659 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:42:40] 2025-11-26 09:41:43,671 | INFO     | PID=1532167 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:42:40] 2025-11-26 09:41:43,671 | INFO     | .. there are 47 such processes running
[2025-11-26 04:42:40] 2025-11-26 09:41:43,675 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:42:40] 2025-11-26 09:41:43,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:42:40] 2025-11-26 09:41:43,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:42:40] 2025-11-26 09:42:11,784 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:42:40] 2025-11-26 09:42:11,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139798268933952)>', '<ExcThread(monitor, started 139797024732928)>']
[2025-11-26 04:42:40] 2025-11-26 09:42:11,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:42:40] 2025-11-26 09:42:11,919 | INFO     | [monitor] control thread has ended
[2025-11-26 04:42:40] 2025-11-26 09:42:16,823 | INFO     | all workflow threads have been joined
[2025-11-26 04:42:40] 2025-11-26 09:42:16,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:42:40] 2025-11-26 09:42:16,823 | INFO     | traces error code: 0
[2025-11-26 04:42:40] 2025-11-26 09:42:16,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:42:40] 2025-11-26 09:42:17,914 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:42:40] 2025-11-26 09:42:17,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:42:40] 2025-11-26 09:42:17,985 [wrapper] pilotpid: 1532167
[2025-11-26 04:42:40] 2025-11-26 09:42:18,022 [wrapper] Pilot exit status: 0
[2025-11-26 04:42:40] 2025-11-26 09:42:18,177 [wrapper] pandaids: 6895369427
[2025-11-26 04:42:40] 2025-11-26 09:42:18,786 [wrapper] cleanup supervisor_pilot 3333533 1532168
[2025-11-26 04:42:40] 2025-11-26 09:42:18,834 [wrapper] Test setup, not cleaning
[2025-11-26 04:42:40] 2025-11-26 09:42:18,875 [wrapper] apfmon messages muted
[2025-11-26 04:42:40] 2025-11-26 09:42:18,929 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:42:40] 2025-11-26 09:42:18,978 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:42:40]  *** Error codes and diagnostics ***
[2025-11-26 04:42:40]     "exeErrorCode": 0,
[2025-11-26 04:42:40]     "exeErrorDiag": "",
[2025-11-26 04:42:40]     "pilotErrorCode": 0,
[2025-11-26 04:42:40]     "pilotErrorDiag": "",
[2025-11-26 04:42:40]  *** Listing of results directory ***
[2025-11-26 04:42:40] total 1336276
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 15:13 queuedata.json
[2025-11-26 04:42:40] -rwx------. 1 boincer umatlas     36292 Nov 23 15:15 runpilot2-wrapper.sh
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas       100 Nov 25 14:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:42:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 14:49 run_atlas
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas       105 Nov 25 14:49 job.xml
[2025-11-26 04:42:40] -rw-r--r--. 2 boincer umatlas 411233115 Nov 25 14:49 EVNT.47483658._000884.pool.root.1
[2025-11-26 04:42:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 14:49 start_atlas.sh
[2025-11-26 04:42:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 14:49 shared
[2025-11-26 04:42:40] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 14:49 input.tar.gz
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas         0 Nov 25 14:49 boinc_lockfile
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 14:49 pandaJob.out
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas        57 Nov 25 14:49 setup.sh.local
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas    991893 Nov 25 14:50 agis_schedconf.cvmfs.json
[2025-11-26 04:42:40] drwx------. 5 boincer umatlas      4096 Nov 25 14:50 pilot3
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas       532 Nov 26 03:49 boinc_task_state.xml
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas 936586798 Nov 26 04:38 HITS.47556137._008705.pool.root.1
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas      1074 Nov 26 04:40 memory_monitor_summary.json
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas      7176 Nov 26 04:40 init_data.xml
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas   1516240 Nov 26 04:40 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas   2001975 Nov 26 04:40 log.47556137._008705.job.log.tgz.1
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas      8643 Nov 26 04:41 heartbeat.json
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas        95 Nov 26 04:41 pilot_heartbeat.json
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas      4825 Nov 26 04:42 pilotlog.txt
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas   6299090 Nov 26 04:42 log.47556137._008705.job.log.1
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas       353 Nov 26 04:42 output.list
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas       620 Nov 26 04:42 runtime_log
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas   8325120 Nov 26 04:42 result.tar.gz
[2025-11-26 04:42:40] -rw-------. 1 boincer umatlas       665 Nov 26 04:42 X0OODmtfVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6ALKDmyWAbkn.diag
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 04:42 runtime_log.err
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas        29 Nov 26 04:42 wrapper_checkpoint.txt
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 04:42 boinc_mmap_file
[2025-11-26 04:42:40] -rw-r--r--. 1 boincer umatlas     21780 Nov 26 04:42 stderr.txt
[2025-11-26 04:42:43] HITS file was successfully produced:
[2025-11-26 04:42:43] -rw-------. 1 boincer umatlas 936586798 Nov 26 04:38 shared/HITS.pool.root.1
[2025-11-26 04:42:43]  *** Contents of shared directory: ***
[2025-11-26 04:42:43] total 1324968
[2025-11-26 04:42:43] -rw-r--r--. 2 boincer umatlas 411233115 Nov 25 14:49 ATLAS.root_0
[2025-11-26 04:42:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 14:49 start_atlas.sh
[2025-11-26 04:42:43] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 14:49 input.tar.gz
[2025-11-26 04:42:43] -rw-------. 1 boincer umatlas 936586798 Nov 26 04:38 HITS.pool.root.1
[2025-11-26 04:42:43] -rw-------. 1 boincer umatlas   8325120 Nov 26 04:42 result.tar.gz
04:42:44 (1522912): run_atlas exited; CPU time 144892.123517
04:42:44 (1522912): called boinc_finish(0)

</stderr_txt>
]]>

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