Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:49:19 (3096020): wrapper (7.7.26015): starting
13:49:19 (3096020): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:49:19] Arguments: --nthreads 8
[2025-11-25 13:49:19] Threads: 8
[2025-11-25 13:49:19] Checking for CVMFS
[2025-11-25 13:49:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:49:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:49:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:49:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:49:21] 2.13.2.0 14352 33308 115800 153293 3 386 39985970 40960001 31338 16776704 0 259499018 99.686 199815752 47716 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 13:49:21] CVMFS is ok
[2025-11-25 13:49:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:49:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:49:21] Further information can be found at the LHC@home message board.
[2025-11-25 13:49:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:49:21] Checking for apptainer binary...
[2025-11-25 13:49:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:49:21] Running /usr/bin/apptainer --version
[2025-11-25 13:49:23] apptainer version 1.4.4-1.el9
[2025-11-25 13:49:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:49:24] c-208-36.aglt2.org
[2025-11-25 13:49:24] apptainer works
[2025-11-25 13:49:24] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:49:24] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:49:24] Starting ATLAS job with PandaID=6895369440
[2025-11-25 13:49:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:04:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:04:18] 2025-11-26 08:03:30,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:04:18] 2025-11-26 08:03:31,737 | INFO     | time since job start (47572s) is within the limit (172800.0s)
[2025-11-26 03:04:18] 2025-11-26 08:03:33,013 | INFO     | monitor loop #2918: job 0:6895369440 is in state 'finished'
[2025-11-26 03:04:18] 2025-11-26 08:03:33,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:04:18] 2025-11-26 08:03:35,534 | INFO     | monitor loop #2919: job 0:6895369440 is in state 'finished'
[2025-11-26 03:04:18] 2025-11-26 08:03:35,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:04:18] 2025-11-26 08:03:37,081 | INFO     | PID=3101582 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 03:04:18] 2025-11-26 08:03:37,081 | INFO     | .. there are 35 such processes running
[2025-11-26 03:04:18] 2025-11-26 08:03:38,056 | INFO     | monitor loop #2920: job 0:6895369440 is in state 'finished'
[2025-11-26 03:04:18] 2025-11-26 08:03:38,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:04:18] 2025-11-26 08:03:38,102 | INFO     | time since job start (47579s) is within the limit (172800.0s)
[2025-11-26 03:04:18] 2025-11-26 08:03:40,118 | INFO     | time since job start (47581s) is within the limit (172800.0s)
[2025-11-26 03:04:18] 2025-11-26 08:03:40,562 | INFO     | monitor loop #2921: job 0:6895369440 is in state 'finished'
[2025-11-26 03:04:18] 2025-11-26 08:03:40,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:04:18] 2025-11-26 08:03:42,127 | INFO     | time since job start (47583s) is within the limit (172800.0s)
[2025-11-26 03:04:18] 2025-11-26 08:03:42,662 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 03:04:18] 2025-11-26 08:03:42,671 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.972257812499
[2025-11-26 03:04:18] 2025-11-26 08:03:42,689 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895369440/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:04:18] 2025-11-26 08:03:42,724 | INFO     | extracted standard info from prmon json
[2025-11-26 03:04:18] 2025-11-26 08:03:42,724 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:04:18] 2025-11-26 08:03:42,724 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:04:18] 2025-11-26 08:03:42,797 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:04:18] 2025-11-26 08:03:42,814 | INFO     | sum of square deviations: 145451717457.377
[2025-11-26 03:04:18] 2025-11-26 08:03:42,845 | INFO     | sum of deviations: -342904976429.0531
[2025-11-26 03:04:18] 2025-11-26 08:03:42,845 | INFO     | mean x: 1764120449.028314
[2025-11-26 03:04:18] 2025-11-26 08:03:42,845 | INFO     | mean y: 2789784.7297297297
[2025-11-26 03:04:18] 2025-11-26 08:03:42,845 | INFO     | intersect: 4161734701.7557607
[2025-11-26 03:04:18] 2025-11-26 08:03:42,892 | INFO     | chi2: 43.07943391520625
[2025-11-26 03:04:18] 2025-11-26 08:03:42,892 | INFO     | sum of square deviations: 142662136501.67352
[2025-11-26 03:04:18] 2025-11-26 08:03:42,952 | INFO     | sum of deviations: -90256979024.19095
[2025-11-26 03:04:18] 2025-11-26 08:03:42,995 | INFO     | mean x: 1764120296.5414507
[2025-11-26 03:04:18] 2025-11-26 08:03:42,995 | INFO     | mean y: 2803591.3497409327
[2025-11-26 03:04:18] 2025-11-26 08:03:42,995 | INFO     | intersect: 1118896287.741004
[2025-11-26 03:04:18] 2025-11-26 08:03:42,995 | INFO     | chi2: 39.36036143408611
[2025-11-26 03:04:18] 2025-11-26 08:03:42,996 | INFO     | current chi2=39.36036143408611 (change=8.63305791909995 %)
[2025-11-26 03:04:18] 2025-11-26 08:03:42,996 | INFO     | right removable region: 771
[2025-11-26 03:04:18] 2025-11-26 08:03:42,996 | INFO     | sum of square deviations: 142661175141.67343
[2025-11-26 03:04:18] 2025-11-26 08:03:43,121 | INFO     | sum of deviations: -656851908602.0853
[2025-11-26 03:04:18] 2025-11-26 08:03:43,121 | INFO     | mean x: 1764120601.5414507
[2025-11-26 03:04:18] 2025-11-26 08:03:43,121 | INFO     | mean y: 2806940.737046632
[2025-11-26 03:04:18] 2025-11-26 08:03:43,121 | INFO     | intersect: 8125311069.670638
[2025-11-26 03:04:18] 2025-11-26 08:03:43,121 | INFO     | chi2: 38.625044097010395
[2025-11-26 03:04:18] 2025-11-26 08:03:43,121 | INFO     | current chi2=38.625044097010395 (change=10.33994510457933 %)
[2025-11-26 03:04:18] 2025-11-26 08:03:43,121 | INFO     | left removable region: 10
[2025-11-26 03:04:18] 2025-11-26 08:03:43,122 | INFO     | sum of square deviations: 136649203158.16806
[2025-11-26 03:04:18] 2025-11-26 08:03:43,136 | INFO     | monitor loop #2922: job 0:6895369440 is in state 'finished'
[2025-11-26 03:04:18] 2025-11-26 08:03:43,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:04:18] 2025-11-26 08:03:43,137 | INFO     | sum of deviations: -619114592298.1079
[2025-11-26 03:04:18] 2025-11-26 08:03:43,137 | INFO     | mean x: 1764120571.0709593
[2025-11-26 03:04:18] 2025-11-26 08:03:43,137 | INFO     | mean y: 2838416.5019710907
[2025-11-26 03:04:18] 2025-11-26 08:03:43,138 | INFO     | intersect: 7995514282.010797
[2025-11-26 03:04:18] 2025-11-26 08:03:43,138 | INFO     | chi2: 31.12420431741331
[2025-11-26 03:04:18] 2025-11-26 08:03:43,138 | INFO     | current memory leak: -4.53 B/s (using 761 data points, chi2=31.12)
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | could have reported an average CPU frequency of 3794 MHz (29 samples)
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | ..............................
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | . Timing measurements:
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | . get job = 0 s
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | . initial setup = 6 s
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | . payload setup = 43 s
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | . stage-in = 0 s
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | . payload execution = 47428 s
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | . stage-out = 6 s
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | . log creation = 2 s
[2025-11-26 03:04:18] 2025-11-26 08:03:43,139 | INFO     | ..............................
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | 
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | job summary report
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | --------------------------------------------------
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | PanDA job id: 6895369440
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | task id: 47556137
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | errors: (none)
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | pilot state: finished 
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | transexitcode: 0
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | exeerrorcode: 0
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | exeerrordiag: 
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | exitcode: 0
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | exitmsg: OK
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | cpuconsumptiontime: 142021 s
[2025-11-26 03:04:18] 2025-11-26 08:03:43,623 | INFO     | nevents: 1000
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | neventsw: 0
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | pid: 3117864
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | pgrp: 3117864
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | corecount: 8
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | event service: False
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | sizes: {0: 2283487, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 31: 2284689, 34: 2284845, 47473: 2330465, 47474: 2330464, 47480: 2339514, 47483: 2339570, 475
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | --------------------------------------------------
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | 
[2025-11-26 03:04:18] 2025-11-26 08:03:43,624 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,807 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | job 6895369440 has completed (purged errors)
[2025-11-26 03:04:18] 2025-11-26 08:03:43,808 | INFO     | overall cleanup function is called
[2025-11-26 03:04:18] 2025-11-26 08:03:44,830 | INFO     | --- collectZombieJob: --- 10, [3117864]
[2025-11-26 03:04:18] 2025-11-26 08:03:44,830 | INFO     | zombie collector waiting for pid 3117864
[2025-11-26 03:04:18] 2025-11-26 08:03:44,830 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:04:18] 2025-11-26 08:03:44,830 | INFO     | collected zombie processes
[2025-11-26 03:04:18] 2025-11-26 08:03:44,830 | INFO     | will attempt to kill all subprocesses of pid=3117864
[2025-11-26 03:04:18] 2025-11-26 08:03:45,748 | INFO     | process IDs to be killed: [3117864] (in reverse order)
[2025-11-26 03:04:18] 2025-11-26 08:03:46,188 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:04:18] 2025-11-26 08:03:46,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:04:18] 2025-11-26 08:03:46,225 | INFO     | did not find any defunct processes belonging to 3117864
[2025-11-26 03:04:18] 2025-11-26 08:03:46,244 | INFO     | did not find any defunct processes belonging to 3117864
[2025-11-26 03:04:18] 2025-11-26 08:03:46,252 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:04:18] 2025-11-26 08:03:46,252 | INFO     | ready for new job
[2025-11-26 03:04:18] 2025-11-26 08:03:46,252 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:04:18] 2025-11-26 08:03:46,255 | INFO     | ***************************************
[2025-11-26 03:04:18] 2025-11-26 08:03:46,255 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:04:18] 2025-11-26 08:03:46,255 | INFO     | ***************************************
[2025-11-26 03:04:18] 2025-11-26 08:03:46,255 | INFO     | 
[2025-11-26 03:04:18] 2025-11-26 08:03:46,264 | INFO     | architecture information:
[2025-11-26 03:04:18] 2025-11-26 08:03:46,269 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:04:18] 2025-11-26 08:03:46,309 | INFO     | cat /etc/os-release:
[2025-11-26 03:04:18] NAME="CentOS Linux"
[2025-11-26 03:04:18] VERSION="7 (Core)"
[2025-11-26 03:04:18] ID="centos"
[2025-11-26 03:04:18] ID_LIKE="rhel fedora"
[2025-11-26 03:04:18] VERSION_ID="7"
[2025-11-26 03:04:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:04:18] ANSI_COLOR="0;31"
[2025-11-26 03:04:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:04:18] HOME_URL="https://www.centos.org/"
[2025-11-26 03:04:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:04:18] 
[2025-11-26 03:04:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:04:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:04:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:04:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:04:18] 
[2025-11-26 03:04:18] 2025-11-26 08:03:46,309 | INFO     | ***************************************
[2025-11-26 03:04:18] 2025-11-26 08:03:46,813 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 03:04:18] 2025-11-26 08:03:46,866 | INFO     | sufficient remaining disk space (155618115584 B)
[2025-11-26 03:04:18] 2025-11-26 08:03:46,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:04:18] 2025-11-26 08:03:46,867 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:04:18] 2025-11-26 08:03:46,867 | INFO     | update_server=False
[2025-11-26 03:04:18] 2025-11-26 08:03:46,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:04:18] 2025-11-26 08:03:46,868 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:04:18] 2025-11-26 08:03:46,868 | INFO     | aborting loop
[2025-11-26 03:04:18] 2025-11-26 08:03:46,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:04:18] 2025-11-26 08:03:47,517 | INFO     | all job control threads have been joined
[2025-11-26 03:04:18] 2025-11-26 08:03:47,705 | INFO     | all data control threads have been joined
[2025-11-26 03:04:18] 2025-11-26 08:03:47,714 | INFO     | all payload control threads have been joined
[2025-11-26 03:04:18] 2025-11-26 08:03:47,873 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:47,874 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:47,903 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:04:18] 2025-11-26 08:03:48,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:04:18] 2025-11-26 08:03:48,477 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,477 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,522 | INFO     | [job] control thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,645 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,657 | INFO     | [job] validate thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,665 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,711 | INFO     | [data] control thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,719 | INFO     | [payload] control thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:48,877 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:49,050 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:49,273 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:49,292 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:03:52,099 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:04:18] 2025-11-26 08:04:02,526 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:04:18] 2025-11-26 08:04:04,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326922876736)>', '<ExcThread(monitor, started 140326429775616)>']
[2025-11-26 03:04:18] 2025-11-26 08:04:09,365 | INFO     | all workflow threads have been joined
[2025-11-26 03:04:18] 2025-11-26 08:04:09,365 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:04:18] 2025-11-26 08:04:09,365 | INFO     | traces error code: 0
[2025-11-26 03:04:18] 2025-11-26 08:04:09,365 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:04:18] 2025-11-26 08:04:17,135 | INFO     | PID=3101582 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 03:04:18] 2025-11-26 08:04:17,136 | INFO     | .. there are 36 such processes running
[2025-11-26 03:04:18] 2025-11-26 08:04:17,136 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:04:18] 2025-11-26 08:04:17,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:04:18] 2025-11-26 08:04:17,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:04:18] 2025-11-26 08:04:17,136 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:04:18] 2025-11-26 08:04:17,136 | INFO     | [monitor] control thread has ended
[2025-11-26 03:04:18] 2025-11-26 08:04:17,292 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:04:18] 2025-11-26 08:04:17,329 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:04:18] 2025-11-26 08:04:17,363 [wrapper] pilotpid: 3101582
[2025-11-26 03:04:18] 2025-11-26 08:04:17,405 [wrapper] Pilot exit status: 0
[2025-11-26 03:04:18] 2025-11-26 08:04:17,526 [wrapper] pandaids: 6895369440
[2025-11-26 03:04:18] 2025-11-26 08:04:17,742 [wrapper] cleanup supervisor_pilot 2240442 3101583
[2025-11-26 03:04:18] 2025-11-26 08:04:17,780 [wrapper] Test setup, not cleaning
[2025-11-26 03:04:18] 2025-11-26 08:04:17,823 [wrapper] apfmon messages muted
[2025-11-26 03:04:18] 2025-11-26 08:04:17,866 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:04:18] 2025-11-26 08:04:17,908 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:04:18]  *** Error codes and diagnostics ***
[2025-11-26 03:04:18]     "exeErrorCode": 0,
[2025-11-26 03:04:18]     "exeErrorDiag": "",
[2025-11-26 03:04:18]     "pilotErrorCode": 0,
[2025-11-26 03:04:18]     "pilotErrorDiag": "",
[2025-11-26 03:04:18]  *** Listing of results directory ***
[2025-11-26 03:04:18] total 1332240
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 15:16 pilot3.tar.gz
[2025-11-26 03:04:18] -rwx------. 1 boincer umatlas     36292 Nov 23 15:21 runpilot2-wrapper.sh
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 15:21 queuedata.json
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas       100 Nov 25 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:04:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 13:49 run_atlas
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas       105 Nov 25 13:49 job.xml
[2025-11-26 03:04:18] -rw-r--r--. 2 boincer umatlas 409701416 Nov 25 13:49 EVNT.47483658._000885.pool.root.1
[2025-11-26 03:04:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:49 start_atlas.sh
[2025-11-26 03:04:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 13:49 shared
[2025-11-26 03:04:18] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 13:49 input.tar.gz
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas         0 Nov 25 13:49 boinc_lockfile
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 13:49 pandaJob.out
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas        57 Nov 25 13:49 setup.sh.local
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas    991543 Nov 25 13:50 agis_schedconf.cvmfs.json
[2025-11-26 03:04:18] drwx------. 5 boincer umatlas      4096 Nov 25 13:50 pilot3
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas       533 Nov 26 01:50 boinc_task_state.xml
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas      7174 Nov 26 03:01 init_data.xml
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas 934397683 Nov 26 03:01 HITS.47556137._008718.pool.root.1
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas      1076 Nov 26 03:02 memory_monitor_summary.json
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas   1516240 Nov 26 03:03 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas   1978755 Nov 26 03:03 log.47556137._008718.job.log.tgz.1
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas        95 Nov 26 03:03 pilot_heartbeat.json
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas      7961 Nov 26 03:03 heartbeat.json
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas       823 Nov 26 03:04 pilotlog.txt
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 03:04 boinc_mmap_file
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas        29 Nov 26 03:04 wrapper_checkpoint.txt
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas   6118072 Nov 26 03:04 log.47556137._008718.job.log.1
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas       353 Nov 26 03:04 output.list
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas       620 Nov 26 03:04 runtime_log
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas   8120320 Nov 26 03:04 result.tar.gz
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 03:04 runtime_log.err
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas       666 Nov 26 03:04 2oKODmplVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHBLKDm1rJvIm.diag
[2025-11-26 03:04:18] -rw-r--r--. 1 boincer umatlas     21912 Nov 26 03:04 stderr.txt
[2025-11-26 03:04:18] HITS file was successfully produced:
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas 934397683 Nov 26 03:01 shared/HITS.pool.root.1
[2025-11-26 03:04:18]  *** Contents of shared directory: ***
[2025-11-26 03:04:18] total 1321136
[2025-11-26 03:04:18] -rw-r--r--. 2 boincer umatlas 409701416 Nov 25 13:49 ATLAS.root_0
[2025-11-26 03:04:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:49 start_atlas.sh
[2025-11-26 03:04:18] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 13:49 input.tar.gz
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas 934397683 Nov 26 03:01 HITS.pool.root.1
[2025-11-26 03:04:18] -rw-------. 1 boincer umatlas   8120320 Nov 26 03:04 result.tar.gz
03:04:19 (3096020): run_atlas exited; CPU time 142606.218858
03:04:19 (3096020): called boinc_finish(0)

</stderr_txt>
]]>

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