Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:12:26 (1270324): wrapper (7.7.26015): starting
09:12:26 (1270324): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 09:12:26] Arguments: --nthreads 8
[2025-11-25 09:12:26] Threads: 8
[2025-11-25 09:12:26] Checking for CVMFS
[2025-11-25 09:12:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:12:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:12:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:12:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:12:26] 2.11.3.0 323444 27230 202716 153290 3 90 45414771 45568000 9452 130560 0 198126207 99.797 113639645 17671 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 09:12:26] CVMFS is ok
[2025-11-25 09:12:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:12:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:12:26] Further information can be found at the LHC@home message board.
[2025-11-25 09:12:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:12:26] Checking for apptainer binary...
[2025-11-25 09:12:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:12:26] Running /usr/bin/apptainer --version
[2025-11-25 09:12:26] apptainer version 1.4.1-1.el9
[2025-11-25 09:12:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:12:27] wns0003.triumf.lcg
[2025-11-25 09:12:27] apptainer works
[2025-11-25 09:12:27] Set ATHENA_PROC_NUMBER=8
[2025-11-25 09:12:27] Set ATHENA_CORE_NUMBER=8
[2025-11-25 09:12:27] Starting ATLAS job with PandaID=6896714625
[2025-11-25 09:12:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 09:19:07]  *** The last 200 lines of the pilot log: ***
[2025-11-25 09:19:07] 2025-11-25 17:18:08,892 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | WARNING  | wrong length of table data, x=[1764090845.0, 1764090906.0], y=[1069.0, 866598.0] (must be same and length>=4)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | INFO     | ..............................
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . Timing measurements:
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . get job = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . initial setup = 10 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . payload setup = 15 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . stage-in = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . payload execution = 108 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . stage-out = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . log creation = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | ..............................
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896714625/pilotlog.txt
[2025-11-25 09:19:07] 2025-11-25 17:18:08,907 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 09:19:07] - Log from pilotlog.txt -
[2025-11-25 09:19:07] 2025-11-25 17:18:08,890 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896714625/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,891 | INFO     | extracted standard info from prmon json
[2025-11-25 09:19:07] 2025-11-25 17:18:08,891 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 09:19:07] 2025-11-25 17:18:08,891 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 09:19:07] 2025-11-25 17:18:08,892 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 09:19:07] 2025-11-25 17:18:08,892 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | WARNING  | wrong length of table data, x=[1764090845.0, 1764090906.0], y=[1069.0, 866598.0] (must be same and length>=4)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | INFO     | ..............................
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . Timing measurements:
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . get job = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . initial setup = 10 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . payload setup = 15 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . stage-in = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . payload execution = 108 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . stage-out = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . log creation = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | ..............................
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896714625/pilotlog.txt
[2025-11-25 09:19:07] 2025-11-25 17:18:08,907 | WARNING  | 
[2025-11-25 09:19:07] [begin log extracts]
[2025-11-25 09:19:07] - Log from pilotlog.txt -
[2025-11-25 09:19:07] 2025-11-25 17:18:08,890 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896714625/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,891 | INFO     | extracted standard info from prmon json
[2025-11-25 09:19:07] 2025-11-25 17:18:08,891 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 09:19:07] 2025-11-25 17:18:08,891 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 09:19:07] 2025-11-25 17:18:08,892 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 09:19:07] 2025-11-25 17:18:08,892 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | WARNING  | wrong length of table data, x=[1764090845.0, 1764090906.0], y=[1069.0, 866598.0] (must be same and length>=4)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,893 | INFO     | ..............................
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . Timing measurements:
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . get job = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . initial setup = 10 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . payload setup = 15 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . stage-in = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . payload execution = 108 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . stage-out = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | . log creation = 0 s
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | ..............................
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 09:19:07] 2025-11-25 17:18:08,894 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896714625/pilotlog.txt
[2025-11-25 09:19:07] [end log extracts]
[2025-11-25 09:19:07] 2025-11-25 17:18:08,908 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 09:19:07] 2025-11-25 17:18:08,908 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 09:19:07] 2025-11-25 17:18:09,253 | INFO     | 
[2025-11-25 09:19:07] 2025-11-25 17:18:09,253 | INFO     | job summary report
[2025-11-25 09:19:07] 2025-11-25 17:18:09,253 | INFO     | --------------------------------------------------
[2025-11-25 09:19:07] 2025-11-25 17:18:09,253 | INFO     | PanDA job id: 6896714625
[2025-11-25 09:19:07] 2025-11-25 17:18:09,253 | INFO     | task id: 47556161
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 09:15:38,323 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | pilot state: failed 
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | transexitcode: 65
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | exeerrorcode: 65
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | exitcode: 65
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | cpuconsumptiontime: 45 s
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | nevents: 0
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | neventsw: 0
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | pid: 1280607
[2025-11-25 09:19:07] 2025-11-25 17:18:09,254 | INFO     | pgrp: 1280607
[2025-11-25 09:19:07] 2025-11-25 17:18:09,255 | INFO     | corecount: 8
[2025-11-25 09:19:07] 2025-11-25 17:18:09,255 | INFO     | event service: False
[2025-11-25 09:19:07] 2025-11-25 17:18:09,255 | INFO     | sizes: {0: 2284089, 1: 2284288, 12: 2284288, 22: 2284578, 23: 2284606, 128: 2310050, 129: 2310182, 131: 2314528, 135: 2314584, 269: 2314750}
[2025-11-25 09:19:07] 2025-11-25 17:18:09,255 | INFO     | --------------------------------------------------
[2025-11-25 09:19:07] 2025-11-25 17:18:09,255 | INFO     | 
[2025-11-25 09:19:07] 2025-11-25 17:18:09,255 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 09:19:07] 2025-11-25 17:18:09,295 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,295 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,295 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,296 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,297 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,297 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 09:19:07] 2025-11-25 17:18:09,297 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,297 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 09:19:07] 2025-11-25 17:18:09,297 | INFO     | job 6896714625 has completed (purged errors)
[2025-11-25 09:19:07] 2025-11-25 17:18:09,297 | INFO     | overall cleanup function is called
[2025-11-25 09:19:07] 2025-11-25 17:18:10,321 | INFO     | --- collectZombieJob: --- 10, [1280607]
[2025-11-25 09:19:07] 2025-11-25 17:18:10,321 | INFO     | zombie collector waiting for pid 1280607
[2025-11-25 09:19:07] 2025-11-25 17:18:10,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 09:19:07] 2025-11-25 17:18:10,321 | INFO     | collected zombie processes
[2025-11-25 09:19:07] 2025-11-25 17:18:10,321 | INFO     | will attempt to kill all subprocesses of pid=1280607
[2025-11-25 09:19:07] 2025-11-25 17:18:10,563 | INFO     | process IDs to be killed: [1280607] (in reverse order)
[2025-11-25 09:19:07] 2025-11-25 17:18:10,705 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 09:19:07] 2025-11-25 17:18:10,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 09:19:07] 2025-11-25 17:18:10,711 | INFO     | did not find any defunct processes belonging to 1280607
[2025-11-25 09:19:07] 2025-11-25 17:18:10,715 | INFO     | did not find any defunct processes belonging to 1280607
[2025-11-25 09:19:07] 2025-11-25 17:18:10,715 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 09:19:07] 2025-11-25 17:18:10,715 | INFO     | ready for new job
[2025-11-25 09:19:07] 2025-11-25 17:18:10,716 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 09:19:07] 2025-11-25 17:18:10,717 | INFO     | ***************************************
[2025-11-25 09:19:07] 2025-11-25 17:18:10,717 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 09:19:07] 2025-11-25 17:18:10,717 | INFO     | ***************************************
[2025-11-25 09:19:07] 2025-11-25 17:18:10,717 | INFO     | 
[2025-11-25 09:19:07] 2025-11-25 17:18:10,718 | INFO     | architecture information:
[2025-11-25 09:19:07] 2025-11-25 17:18:10,719 | INFO     | executing command: cat /etc/os-release
[2025-11-25 09:19:07] 2025-11-25 17:18:10,729 | INFO     | cat /etc/os-release:
[2025-11-25 09:19:07] NAME="CentOS Linux"
[2025-11-25 09:19:07] VERSION="7 (Core)"
[2025-11-25 09:19:07] ID="centos"
[2025-11-25 09:19:07] ID_LIKE="rhel fedora"
[2025-11-25 09:19:07] VERSION_ID="7"
[2025-11-25 09:19:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 09:19:07] ANSI_COLOR="0;31"
[2025-11-25 09:19:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 09:19:07] HOME_URL="https://www.centos.org/"
[2025-11-25 09:19:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 09:19:07] 
[2025-11-25 09:19:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 09:19:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 09:19:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 09:19:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 09:19:07] 
[2025-11-25 09:19:07] 2025-11-25 17:18:10,730 | INFO     | ***************************************
[2025-11-25 09:19:07] 2025-11-25 17:18:11,234 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 09:19:07] 2025-11-25 17:18:11,389 | INFO     | sufficient remaining disk space (1390871052288 B)
[2025-11-25 09:19:07] 2025-11-25 17:18:11,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 09:19:07] 2025-11-25 17:18:11,390 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 09:19:07] 2025-11-25 17:18:11,390 | INFO     | update_server=False
[2025-11-25 09:19:07] 2025-11-25 17:18:11,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 09:19:07] 2025-11-25 17:18:11,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:19:07] 2025-11-25 17:18:11,391 | INFO     | aborting loop
[2025-11-25 09:19:07] 2025-11-25 17:18:11,451 | INFO     | all payload control threads have been joined
[2025-11-25 09:19:07] 2025-11-25 17:18:11,631 | INFO     | all job control threads have been joined
[2025-11-25 09:19:07] 2025-11-25 17:18:12,159 | INFO     | all data control threads have been joined
[2025-11-25 09:19:07] 2025-11-25 17:18:12,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 09:19:07] 2025-11-25 17:18:12,397 | INFO     | [job] job monitor thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:12,406 | INFO     | [job] retrieve thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:12,457 | INFO     | [payload] control thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:12,494 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:12,524 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:12,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 09:19:07] 2025-11-25 17:18:12,637 | INFO     | [job] control thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:12,658 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:12,791 | INFO     | [data] copytool_in thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:12,999 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:13,165 | INFO     | [data] control thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:13,485 | INFO     | [payload] failed_post thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:13,733 | INFO     | [job] validate thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:13,982 | INFO     | [payload] validate_post thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:14,199 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:19:07] 2025-11-25 17:18:14,567 | INFO     | [data] copytool_out thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:15,205 | INFO     | [job] queue monitor thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:16,248 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 09:19:07] 2025-11-25 17:18:40,954 | INFO     | PID=1274001 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 09:19:07] 2025-11-25 17:18:40,954 | INFO     | .. there are 12 such processes running
[2025-11-25 09:19:07] 2025-11-25 17:18:40,954 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 09:19:07] 2025-11-25 17:18:40,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 09:19:07] 2025-11-25 17:18:40,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 09:19:07] 2025-11-25 17:19:01,228 | INFO     | [monitor] cgroup control has ended
[2025-11-25 09:19:07] 2025-11-25 17:19:02,235 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139840315881280)>', '<ExcThread(monitor, started 139839462680320)>']
[2025-11-25 09:19:07] 2025-11-25 17:19:03,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 09:19:07] 2025-11-25 17:19:03,086 | INFO     | [monitor] control thread has ended
[2025-11-25 09:19:07] 2025-11-25 17:19:07,261 | INFO     | all workflow threads have been joined
[2025-11-25 09:19:07] 2025-11-25 17:19:07,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 09:19:07] 2025-11-25 17:19:07,261 | INFO     | traces error code: 0
[2025-11-25 09:19:07] 2025-11-25 17:19:07,262 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 09:19:07] 2025-11-25 17:19:07,578 [wrapper] ==== pilot stdout END ====
[2025-11-25 09:19:07] 2025-11-25 17:19:07,580 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 09:19:07] 2025-11-25 17:19:07,582 [wrapper] pilotpid: 1274001
[2025-11-25 09:19:07] 2025-11-25 17:19:07,584 [wrapper] Pilot exit status: 0
[2025-11-25 09:19:07] 2025-11-25 17:19:07,608 [wrapper] pandaids: 6896714625
[2025-11-25 09:19:07] 2025-11-25 17:19:07,637 [wrapper] cleanup supervisor_pilot 1274007 1274002
[2025-11-25 09:19:07] 2025-11-25 17:19:07,639 [wrapper] Test setup, not cleaning
[2025-11-25 09:19:07] 2025-11-25 17:19:07,641 [wrapper] apfmon messages muted
[2025-11-25 09:19:07] 2025-11-25 17:19:07,643 [wrapper] ==== wrapper stdout END ====
[2025-11-25 09:19:07] 2025-11-25 17:19:07,644 [wrapper] ==== wrapper stderr END ====
[2025-11-25 09:19:07]  *** Error codes and diagnostics ***
[2025-11-25 09:19:07]     "exeErrorCode": 65,
[2025-11-25 09:19:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 09:19:07]     "pilotErrorCode": 1305,
[2025-11-25 09:19:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 09:19:07]  *** Listing of results directory ***
[2025-11-25 09:19:07] total 406144
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-25 09:19:07] -rwx------. 1 boinc boinc     36292 Nov 24 22:41 runpilot2-wrapper.sh
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc      5112 Nov 24 22:41 queuedata.json
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc       100 Nov 25 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 09:19:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 09:12 run_atlas
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc       105 Nov 25 09:12 job.xml
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc      6444 Nov 25 09:12 init_data.xml
[2025-11-25 09:19:07] -rw-r--r--. 2 boinc boinc 411664993 Nov 25 09:12 EVNT.47483658._002125.pool.root.1
[2025-11-25 09:19:07] -rw-r--r--. 2 boinc boinc     15847 Nov 25 09:12 start_atlas.sh
[2025-11-25 09:19:07] drwxrwx--x. 2 boinc boinc      4096 Nov 25 09:12 shared
[2025-11-25 09:19:07] -rw-r--r--. 2 boinc boinc    590101 Nov 25 09:12 input.tar.gz
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc         0 Nov 25 09:12 boinc_lockfile
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc      2784 Nov 25 09:12 pandaJob.out
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc    991543 Nov 25 09:12 agis_schedconf.cvmfs.json
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc   1516240 Nov 25 09:12 agis_ddmendpoints.agis.ALL.json
[2025-11-25 09:19:07] drwx------. 5 boinc boinc      4096 Nov 25 09:13 pilot3
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc       524 Nov 25 09:15 boinc_task_state.xml
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc       988 Nov 25 09:15 memory_monitor_summary.json
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc     49167 Nov 25 09:15 log.47556161._001088.job.log.tgz.1
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc        95 Nov 25 09:17 pilot_heartbeat.json
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc     10336 Nov 25 09:18 heartbeat.json
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc        23 Nov 25 09:19 wrapper_checkpoint.txt
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc      4823 Nov 25 09:19 pilotlog.txt
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc      8192 Nov 25 09:19 boinc_mmap_file
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc    105751 Nov 25 09:19 log.47556161._001088.job.log.1
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc       186 Nov 25 09:19 output.list
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc       620 Nov 25 09:19 runtime_log
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc    174080 Nov 25 09:19 result.tar.gz
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc       647 Nov 25 09:19 WvCLDmeu1h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuNJKDmMxpABo.diag
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc      8634 Nov 25 09:19 runtime_log.err
[2025-11-25 09:19:07] -rw-r--r--. 1 boinc boinc     22509 Nov 25 09:19 stderr.txt
[2025-11-25 09:19:07] No HITS result produced
[2025-11-25 09:19:07]  *** Contents of shared directory: ***
[2025-11-25 09:19:07] total 402792
[2025-11-25 09:19:07] -rw-r--r--. 2 boinc boinc 411664993 Nov 25 09:12 ATLAS.root_0
[2025-11-25 09:19:07] -rw-r--r--. 2 boinc boinc     15847 Nov 25 09:12 start_atlas.sh
[2025-11-25 09:19:07] -rw-r--r--. 2 boinc boinc    590101 Nov 25 09:12 input.tar.gz
[2025-11-25 09:19:07] -rw-------. 1 boinc boinc    174080 Nov 25 09:19 result.tar.gz
09:19:09 (1270324): run_atlas exited; CPU time 49.272010
09:19:09 (1270324): called boinc_finish(0)

</stderr_txt>
]]>

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