Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:27:51 (35576): wrapper (7.7.26015): starting
12:27:51 (35576): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:27:51] Arguments: --nthreads 8
[2025-11-25 12:27:51] Threads: 8
[2025-11-25 12:27:51] Checking for CVMFS
[2025-11-25 12:27:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:27:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:27:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:27:51] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-11-25 12:27:51] 
[2025-11-25 12:27:51] CVMFS is ok
[2025-11-25 12:27:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:27:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:27:51] Further information can be found at the LHC@home message board.
[2025-11-25 12:27:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:27:51] Checking for apptainer binary...
[2025-11-25 12:27:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:27:51] Running /usr/bin/apptainer --version
[2025-11-25 12:27:51] apptainer version 1.3.2-1.el7
[2025-11-25 12:27:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:27:52] c-9-34.aglt2.org
[2025-11-25 12:27:52] apptainer works
[2025-11-25 12:27:52] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:27:52] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:27:52] Starting ATLAS job with PandaID=6895386987
[2025-11-25 12:27:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:35:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:35:53] 2025-11-26 10:35:01,866 | INFO     | monitor loop #4259: job 0:6895386987 is in state 'finished'
[2025-11-26 05:35:53] 2025-11-26 10:35:01,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,227 | INFO     | time since job start (61618s) is within the limit (172800.0s)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,571 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 05:35:53] 2025-11-26 10:35:02,579 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.9218437500012
[2025-11-26 05:35:53] 2025-11-26 10:35:02,585 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895386987/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,586 | INFO     | extracted standard info from prmon json
[2025-11-26 05:35:53] 2025-11-26 10:35:02,586 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:35:53] 2025-11-26 10:35:02,586 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:35:53] 2025-11-26 10:35:02,613 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:35:53] 2025-11-26 10:35:02,615 | INFO     | sum of square deviations: 319477747794.87494
[2025-11-26 05:35:53] 2025-11-26 10:35:02,645 | INFO     | sum of deviations: 1669541927397.806
[2025-11-26 05:35:53] 2025-11-26 10:35:02,646 | INFO     | mean x: 1764122486.1049504
[2025-11-26 05:35:53] 2025-11-26 10:35:02,646 | INFO     | mean y: 2864787.2188118813
[2025-11-26 05:35:53] 2025-11-26 10:35:02,646 | INFO     | intersect: -9216169952.905008
[2025-11-26 05:35:53] 2025-11-26 10:35:02,647 | INFO     | chi2: 4.9755092443767275
[2025-11-26 05:35:53] 2025-11-26 10:35:02,649 | INFO     | sum of square deviations: 314756645625.53656
[2025-11-26 05:35:53] 2025-11-26 10:35:02,678 | INFO     | sum of deviations: 1953002626567.788
[2025-11-26 05:35:53] 2025-11-26 10:35:02,678 | INFO     | mean x: 1764122333.6079602
[2025-11-26 05:35:53] 2025-11-26 10:35:02,678 | INFO     | mean y: 2873935.3014925374
[2025-11-26 05:35:53] 2025-11-26 10:35:02,678 | INFO     | intersect: -10943155637.087997
[2025-11-26 05:35:53] 2025-11-26 10:35:02,680 | INFO     | chi2: 2.5258890238324656
[2025-11-26 05:35:53] 2025-11-26 10:35:02,680 | INFO     | current chi2=2.5258890238324656 (change=49.233557817479664 %)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,681 | INFO     | sum of square deviations: 310082288518.678
[2025-11-26 05:35:53] 2025-11-26 10:35:02,708 | INFO     | sum of deviations: 2060130111352.2722
[2025-11-26 05:35:53] 2025-11-26 10:35:02,709 | INFO     | mean x: 1764122181.111
[2025-11-26 05:35:53] 2025-11-26 10:35:02,709 | INFO     | mean y: 2877424.466
[2025-11-26 05:35:53] 2025-11-26 10:35:02,709 | INFO     | intersect: -11717628260.567032
[2025-11-26 05:35:53] 2025-11-26 10:35:02,710 | INFO     | chi2: 2.0053292264470373
[2025-11-26 05:35:53] 2025-11-26 10:35:02,711 | INFO     | current chi2=2.0053292264470373 (change=20.608973413867428 %)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,711 | INFO     | right removable region: 999
[2025-11-26 05:35:53] 2025-11-26 10:35:02,712 | INFO     | sum of square deviations: 314756334403.7519
[2025-11-26 05:35:53] 2025-11-26 10:35:02,741 | INFO     | sum of deviations: 1442039708328.2366
[2025-11-26 05:35:53] 2025-11-26 10:35:02,741 | INFO     | mean x: 1764122638.606965
[2025-11-26 05:35:53] 2025-11-26 10:35:02,741 | INFO     | mean y: 2872123.3373134327
[2025-11-26 05:35:53] 2025-11-26 10:35:02,741 | INFO     | intersect: -8079363616.416883
[2025-11-26 05:35:53] 2025-11-26 10:35:02,743 | INFO     | chi2: 3.249424844595672
[2025-11-26 05:35:53] 2025-11-26 10:35:02,743 | INFO     | current chi2=3.249424844595672 (change=34.69161275766615 %)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,744 | INFO     | sum of square deviations: 310081727136.336
[2025-11-26 05:35:53] 2025-11-26 10:35:02,761 | INFO     | sum of deviations: 1381741544068.7197
[2025-11-26 05:35:53] 2025-11-26 10:35:02,761 | INFO     | mean x: 1764122791.108
[2025-11-26 05:35:53] 2025-11-26 10:35:02,761 | INFO     | mean y: 2874089.91
[2025-11-26 05:35:53] 2025-11-26 10:35:02,762 | INFO     | intersect: -7858155877.330366
[2025-11-26 05:35:53] 2025-11-26 10:35:02,762 | INFO     | chi2: 3.2104154678554417
[2025-11-26 05:35:53] 2025-11-26 10:35:02,762 | INFO     | current chi2=3.2104154678554417 (change=1.2005009688132717 %)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,763 | INFO     | left removable region: 20
[2025-11-26 05:35:53] 2025-11-26 10:35:02,763 | INFO     | sum of square deviations: 290954010809.3585
[2025-11-26 05:35:53] 2025-11-26 10:35:02,779 | INFO     | sum of deviations: 1682808071735.0781
[2025-11-26 05:35:53] 2025-11-26 10:35:02,779 | INFO     | mean x: 1764122760.616956
[2025-11-26 05:35:53] 2025-11-26 10:35:02,779 | INFO     | mean y: 2890058.20020429
[2025-11-26 05:35:53] 2025-11-26 10:35:02,779 | INFO     | intersect: -10200372006.617825
[2025-11-26 05:35:53] 2025-11-26 10:35:02,780 | INFO     | chi2: 0.20140454931337567
[2025-11-26 05:35:53] 2025-11-26 10:35:02,780 | INFO     | current memory leak: 5.78 B/s (using 979 data points, chi2=0.20)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,781 | INFO     | could have reported an average CPU frequency of 2999 MHz (37 samples)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,781 | INFO     | ..............................
[2025-11-26 05:35:53] 2025-11-26 10:35:02,781 | INFO     | . Timing measurements:
[2025-11-26 05:35:53] 2025-11-26 10:35:02,781 | INFO     | . get job = 0 s
[2025-11-26 05:35:53] 2025-11-26 10:35:02,781 | INFO     | . initial setup = 2 s
[2025-11-26 05:35:53] 2025-11-26 10:35:02,781 | INFO     | . payload setup = 5 s
[2025-11-26 05:35:53] 2025-11-26 10:35:02,781 | INFO     | . stage-in = 0 s
[2025-11-26 05:35:53] 2025-11-26 10:35:02,781 | INFO     | . payload execution = 61582 s
[2025-11-26 05:35:53] 2025-11-26 10:35:02,782 | INFO     | . stage-out = 3 s
[2025-11-26 05:35:53] 2025-11-26 10:35:02,782 | INFO     | . log creation = 0 s
[2025-11-26 05:35:53] 2025-11-26 10:35:02,782 | INFO     | ..............................
[2025-11-26 05:35:53] 2025-11-26 10:35:02,844 | INFO     | 
[2025-11-26 05:35:53] 2025-11-26 10:35:02,844 | INFO     | job summary report
[2025-11-26 05:35:53] 2025-11-26 10:35:02,844 | INFO     | --------------------------------------------------
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | PanDA job id: 6895386987
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | task id: 47556149
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | errors: (none)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | pilot state: finished 
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | transexitcode: 0
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | exeerrorcode: 0
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | exeerrordiag: 
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | exitcode: 0
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | exitmsg: OK
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | cpuconsumptiontime: 473868 s
[2025-11-26 05:35:53] 2025-11-26 10:35:02,845 | INFO     | nevents: 1000
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | neventsw: 0
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | pid: 46737
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | pgrp: 46737
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | corecount: 8
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | event service: False
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | sizes: {0: 2284144, 1: 2284343, 5: 2284605, 12: 2284661, 61591: 2337383, 61596: 2346561, 61603: 2346751}
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | --------------------------------------------------
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | 
[2025-11-26 05:35:53] 2025-11-26 10:35:02,846 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 05:35:53] 2025-11-26 10:35:02,876 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,876 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,876 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,877 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:35:53] 2025-11-26 10:35:02,878 | INFO     | job 6895386987 has completed (purged errors)
[2025-11-26 05:35:53] 2025-11-26 10:35:02,878 | INFO     | overall cleanup function is called
[2025-11-26 05:35:53] 2025-11-26 10:35:03,890 | INFO     | --- collectZombieJob: --- 10, [46737]
[2025-11-26 05:35:53] 2025-11-26 10:35:03,890 | INFO     | zombie collector waiting for pid 46737
[2025-11-26 05:35:53] 2025-11-26 10:35:03,890 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:35:53] 2025-11-26 10:35:03,890 | INFO     | collected zombie processes
[2025-11-26 05:35:53] 2025-11-26 10:35:03,891 | INFO     | will attempt to kill all subprocesses of pid=46737
[2025-11-26 05:35:53] 2025-11-26 10:35:04,139 | INFO     | process IDs to be killed: [46737] (in reverse order)
[2025-11-26 05:35:53] 2025-11-26 10:35:04,231 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:35:53] 2025-11-26 10:35:04,231 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:35:53] 2025-11-26 10:35:04,241 | INFO     | did not find any defunct processes belonging to 46737
[2025-11-26 05:35:53] 2025-11-26 10:35:04,246 | INFO     | did not find any defunct processes belonging to 46737
[2025-11-26 05:35:53] 2025-11-26 10:35:04,247 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:35:53] 2025-11-26 10:35:04,247 | INFO     | ready for new job
[2025-11-26 05:35:53] 2025-11-26 10:35:04,247 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:35:53] 2025-11-26 10:35:04,251 | INFO     | ***************************************
[2025-11-26 05:35:53] 2025-11-26 10:35:04,251 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:35:53] 2025-11-26 10:35:04,251 | INFO     | ***************************************
[2025-11-26 05:35:53] 2025-11-26 10:35:04,251 | INFO     | 
[2025-11-26 05:35:53] 2025-11-26 10:35:04,252 | INFO     | architecture information:
[2025-11-26 05:35:53] 2025-11-26 10:35:04,253 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:35:53] 2025-11-26 10:35:04,265 | INFO     | cat /etc/os-release:
[2025-11-26 05:35:53] NAME="CentOS Linux"
[2025-11-26 05:35:53] VERSION="7 (Core)"
[2025-11-26 05:35:53] ID="centos"
[2025-11-26 05:35:53] ID_LIKE="rhel fedora"
[2025-11-26 05:35:53] VERSION_ID="7"
[2025-11-26 05:35:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:35:53] ANSI_COLOR="0;31"
[2025-11-26 05:35:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:35:53] HOME_URL="https://www.centos.org/"
[2025-11-26 05:35:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:35:53] 
[2025-11-26 05:35:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:35:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:35:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:35:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:35:53] 
[2025-11-26 05:35:53] 2025-11-26 10:35:04,265 | INFO     | ***************************************
[2025-11-26 05:35:53] 2025-11-26 10:35:04,769 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 05:35:53] 2025-11-26 10:35:04,789 | INFO     | sufficient remaining disk space (102576947200 B)
[2025-11-26 05:35:53] 2025-11-26 10:35:04,789 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:35:53] 2025-11-26 10:35:04,790 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:35:53] 2025-11-26 10:35:04,790 | INFO     | update_server=False
[2025-11-26 05:35:53] 2025-11-26 10:35:04,790 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:35:53] 2025-11-26 10:35:04,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:35:53] 2025-11-26 10:35:04,790 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:35:53] 2025-11-26 10:35:04,974 | INFO     | all data control threads have been joined
[2025-11-26 05:35:53] 2025-11-26 10:35:05,376 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:35:53] 2025-11-26 10:35:05,376 | INFO     | aborting loop
[2025-11-26 05:35:53] 2025-11-26 10:35:05,793 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:05,795 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:05,979 | INFO     | [data] control thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:06,055 | INFO     | all job control threads have been joined
[2025-11-26 05:35:53] 2025-11-26 10:35:06,146 | INFO     | all payload control threads have been joined
[2025-11-26 05:35:53] 2025-11-26 10:35:06,265 | INFO     | [job] validate thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:06,336 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:06,381 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:06,387 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:06,582 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:06,797 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:06,840 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:06,955 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:35:53] 2025-11-26 10:35:07,061 | INFO     | [job] control thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:07,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:07,127 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:07,152 | INFO     | [payload] control thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:07,274 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:10,961 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:35:53] 2025-11-26 10:35:35,652 | INFO     | PID=40226 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 05:35:53] 2025-11-26 10:35:35,652 | INFO     | .. there are 4 such processes running
[2025-11-26 05:35:53] 2025-11-26 10:35:35,653 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:35:53] 2025-11-26 10:35:35,653 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:35:53] 2025-11-26 10:35:35,653 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:35:53] 2025-11-26 10:35:47,387 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:35:53] 2025-11-26 10:35:48,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918615623488)>', '<ExcThread(monitor, started 139918307202816)>']
[2025-11-26 05:35:53] 2025-11-26 10:35:48,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:35:53] 2025-11-26 10:35:48,727 | INFO     | [monitor] control thread has ended
[2025-11-26 05:35:53] 2025-11-26 10:35:53,092 | INFO     | all workflow threads have been joined
[2025-11-26 05:35:53] 2025-11-26 10:35:53,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:35:53] 2025-11-26 10:35:53,093 | INFO     | traces error code: 0
[2025-11-26 05:35:53] 2025-11-26 10:35:53,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:35:53] 2025-11-26 10:35:53,208 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:35:53] 2025-11-26 10:35:53,211 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:35:53] 2025-11-26 10:35:53,219 [wrapper] pilotpid: 40226
[2025-11-26 05:35:53] 2025-11-26 10:35:53,221 [wrapper] Pilot exit status: 0
[2025-11-26 05:35:53] 2025-11-26 10:35:53,259 [wrapper] pandaids: 6895386987
[2025-11-26 05:35:53] 2025-11-26 10:35:53,328 [wrapper] cleanup supervisor_pilot 45167 40227
[2025-11-26 05:35:53] 2025-11-26 10:35:53,331 [wrapper] Test setup, not cleaning
[2025-11-26 05:35:53] 2025-11-26 10:35:53,334 [wrapper] apfmon messages muted
[2025-11-26 05:35:53] 2025-11-26 10:35:53,336 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:35:53] 2025-11-26 10:35:53,338 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:35:53]  *** Error codes and diagnostics ***
[2025-11-26 05:35:53]     "exeErrorCode": 0,
[2025-11-26 05:35:53]     "exeErrorDiag": "",
[2025-11-26 05:35:53]     "pilotErrorCode": 0,
[2025-11-26 05:35:53]     "pilotErrorDiag": "",
[2025-11-26 05:35:53]  *** Listing of results directory ***
[2025-11-26 05:35:53] total 1321248
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 01:20 pilot3.tar.gz
[2025-11-26 05:35:53] -rwx------ 1 boincer umatlas     36292 Nov 24 01:23 runpilot2-wrapper.sh
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 01:23 queuedata.json
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas       100 Nov 25 12:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:35:53] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 12:27 run_atlas
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas       105 Nov 25 12:27 job.xml
[2025-11-26 05:35:53] -rw-r--r-- 2 boincer umatlas 411992958 Nov 25 12:27 EVNT.47483658._001257.pool.root.1
[2025-11-26 05:35:53] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 12:27 start_atlas.sh
[2025-11-26 05:35:53] drwxrwx--x 2 boincer umatlas      4096 Nov 25 12:27 shared
[2025-11-26 05:35:53] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 12:27 input.tar.gz
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas         0 Nov 25 12:27 boinc_lockfile
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 12:27 pandaJob.out
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas        57 Nov 25 12:27 setup.sh.local
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas    991543 Nov 25 12:28 agis_schedconf.cvmfs.json
[2025-11-26 05:35:53] drwx------ 5 boincer umatlas      4096 Nov 25 12:28 pilot3
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas       533 Nov 26 05:24 boinc_task_state.xml
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas      6038 Nov 26 05:29 init_data.xml
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas 915873560 Nov 26 05:34 HITS.47556149._002438.pool.root.1
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas      1064 Nov 26 05:34 memory_monitor_summary.json
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas   1516240 Nov 26 05:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas   2199300 Nov 26 05:34 log.47556149._002438.job.log.tgz.1
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas        95 Nov 26 05:34 pilot_heartbeat.json
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas      8653 Nov 26 05:35 heartbeat.json
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 05:35 boinc_mmap_file
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas        29 Nov 26 05:35 wrapper_checkpoint.txt
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas      4822 Nov 26 05:35 pilotlog.txt
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas   8384616 Nov 26 05:35 log.47556149._002438.job.log.1
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas       353 Nov 26 05:35 output.list
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas       620 Nov 26 05:35 runtime_log
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas  10608640 Nov 26 05:35 result.tar.gz
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas      9333 Nov 26 05:35 runtime_log.err
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas       665 Nov 26 05:35 Jn8LDmv9eh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmVLKDmJD4hhm.diag
[2025-11-26 05:35:53] -rw-r--r-- 1 boincer umatlas     21002 Nov 26 05:35 stderr.txt
[2025-11-26 05:35:53] HITS file was successfully produced:
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas 915873560 Nov 26 05:34 shared/HITS.pool.root.1
[2025-11-26 05:35:53]  *** Contents of shared directory: ***
[2025-11-26 05:35:53] total 1307708
[2025-11-26 05:35:53] -rw-r--r-- 2 boincer umatlas 411992958 Nov 25 12:27 ATLAS.root_0
[2025-11-26 05:35:53] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 12:27 start_atlas.sh
[2025-11-26 05:35:53] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 12:27 input.tar.gz
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas 915873560 Nov 26 05:34 HITS.pool.root.1
[2025-11-26 05:35:53] -rw------- 1 boincer umatlas  10608640 Nov 26 05:35 result.tar.gz
05:35:55 (35576): run_atlas exited; CPU time 474282.064653
05:35:55 (35576): called boinc_finish(0)

</stderr_txt>
]]>

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