Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:22:52 (8378): wrapper (7.7.26015): starting
20:22:52 (8378): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 20:22:52] Arguments: --nthreads 8
[2025-11-27 20:22:52] Threads: 8
[2025-11-27 20:22:52] Checking for CVMFS
[2025-11-27 20:22:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:22:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:22:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:22:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:22:54] 2.11.2.0 2048 174030 136772 153382 2 15 16606623 25165824 1288 130560 10 58057335 99.875 31705609 2195 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 20:22:54] CVMFS is ok
[2025-11-27 20:22:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:22:54] Checking for apptainer binary...
[2025-11-27 20:22:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:22:54] Running /usr/bin/apptainer --version
[2025-11-27 20:22:54] apptainer version 1.3.2-1.el7
[2025-11-27 20:22:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:22:59] cg-vwn398.simple-grid.lan
[2025-11-27 20:22:59] apptainer works
[2025-11-27 20:22:59] Set ATHENA_PROC_NUMBER=8
[2025-11-27 20:22:59] Set ATHENA_CORE_NUMBER=8
[2025-11-27 20:22:59] Starting ATLAS job with PandaID=6896045950
[2025-11-27 20:22:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 19:42:24]  *** The last 200 lines of the pilot log: ***
[2025-11-28 19:42:24] 2025-11-28 18:41:23,748 | INFO     | time since job start (83673s) is within the limit (172800.0s)
[2025-11-28 19:42:24] 2025-11-28 18:41:24,176 | INFO     | monitor loop #5644: job 0:6896045950 is in state 'finished'
[2025-11-28 19:42:24] 2025-11-28 18:41:24,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:42:24] 2025-11-28 18:41:25,758 | INFO     | time since job start (83675s) is within the limit (172800.0s)
[2025-11-28 19:42:24] 2025-11-28 18:41:26,693 | INFO     | monitor loop #5645: job 0:6896045950 is in state 'finished'
[2025-11-28 19:42:24] 2025-11-28 18:41:26,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:42:24] 2025-11-28 18:41:27,767 | INFO     | time since job start (83677s) is within the limit (172800.0s)
[2025-11-28 19:42:24] 2025-11-28 18:41:29,198 | INFO     | monitor loop #5646: job 0:6896045950 is in state 'finished'
[2025-11-28 19:42:24] 2025-11-28 18:41:29,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:42:24] 2025-11-28 18:41:29,776 | INFO     | time since job start (83679s) is within the limit (172800.0s)
[2025-11-28 19:42:24] 2025-11-28 18:41:31,708 | INFO     | monitor loop #5647: job 0:6896045950 is in state 'finished'
[2025-11-28 19:42:24] 2025-11-28 18:41:31,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:42:24] 2025-11-28 18:41:31,783 | INFO     | time since job start (83681s) is within the limit (172800.0s)
[2025-11-28 19:42:24] 2025-11-28 18:41:33,797 | INFO     | time since job start (83683s) is within the limit (172800.0s)
[2025-11-28 19:42:24] 2025-11-28 18:41:34,214 | INFO     | monitor loop #5648: job 0:6896045950 is in state 'finished'
[2025-11-28 19:42:24] 2025-11-28 18:41:34,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 19:42:24] 2025-11-28 18:41:34,718 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 19:42:24] 2025-11-28 18:41:34,720 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 19:42:24] 2025-11-28 18:41:34,723 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6896045950/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 19:42:24] 2025-11-28 18:41:34,724 | INFO     | extracted standard info from prmon json
[2025-11-28 19:42:24] 2025-11-28 18:41:34,724 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 19:42:24] 2025-11-28 18:41:34,724 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 19:42:24] 2025-11-28 18:41:34,747 | INFO     | fitting pss+swap vs Time
[2025-11-28 19:42:24] 2025-11-28 18:41:34,749 | INFO     | sum of square deviations: 783446289569.0697
[2025-11-28 19:42:24] 2025-11-28 18:41:34,798 | INFO     | sum of deviations: 2494082005442.2373
[2025-11-28 19:42:24] 2025-11-28 18:41:34,799 | INFO     | mean x: 1764313630.5631425
[2025-11-28 19:42:24] 2025-11-28 18:41:34,799 | INFO     | mean y: 2848021.6020558
[2025-11-28 19:42:24] 2025-11-28 18:41:34,799 | INFO     | intersect: -5613801053.811118
[2025-11-28 19:42:24] 2025-11-28 18:41:34,801 | INFO     | chi2: 19.21572855002345
[2025-11-28 19:42:24] 2025-11-28 18:41:34,803 | INFO     | sum of square deviations: 774850095600.8971
[2025-11-28 19:42:24] 2025-11-28 18:41:34,865 | INFO     | sum of deviations: 2948080225108.09
[2025-11-28 19:42:24] 2025-11-28 18:41:34,865 | INFO     | mean x: 1764313478.0670598
[2025-11-28 19:42:24] 2025-11-28 18:41:34,865 | INFO     | mean y: 2856074.8231392778
[2025-11-28 19:42:24] 2025-11-28 18:41:34,865 | INFO     | intersect: -6709845782.105111
[2025-11-28 19:42:24] 2025-11-28 18:41:34,870 | INFO     | chi2: 15.96530966181765
[2025-11-28 19:42:24] 2025-11-28 18:41:34,870 | INFO     | current chi2=15.96530966181765 (change=16.915408019759063 %)
[2025-11-28 19:42:24] 2025-11-28 18:41:34,870 | INFO     | right removable region: 1356
[2025-11-28 19:42:24] 2025-11-28 18:41:34,872 | INFO     | sum of square deviations: 774849212320.8967
[2025-11-28 19:42:24] 2025-11-28 18:41:34,936 | INFO     | sum of deviations: 1957170901796.9473
[2025-11-28 19:42:24] 2025-11-28 18:41:34,936 | INFO     | mean x: 1764313783.0670598
[2025-11-28 19:42:24] 2025-11-28 18:41:34,936 | INFO     | mean y: 2857544.0994841564
[2025-11-28 19:42:24] 2025-11-28 18:41:34,936 | INFO     | intersect: -4453575453.3804
[2025-11-28 19:42:24] 2025-11-28 18:41:34,938 | INFO     | chi2: 15.12336321681233
[2025-11-28 19:42:24] 2025-11-28 18:41:34,938 | INFO     | current chi2=15.12336321681233 (change=21.296956410253443 %)
[2025-11-28 19:42:24] 2025-11-28 18:41:34,938 | INFO     | left removable region: 10
[2025-11-28 19:42:24] 2025-11-28 18:41:34,940 | INFO     | sum of square deviations: 756158548330.7712
[2025-11-28 19:42:24] 2025-11-28 18:41:34,987 | INFO     | sum of deviations: 2083718331123.1812
[2025-11-28 19:42:24] 2025-11-28 18:41:34,988 | INFO     | mean x: 1764313752.5757802
[2025-11-28 19:42:24] 2025-11-28 18:41:34,988 | INFO     | mean y: 2875102.968796434
[2025-11-28 19:42:24] 2025-11-28 18:41:34,988 | INFO     | intersect: -4858979485.874283
[2025-11-28 19:42:24] 2025-11-28 18:41:34,990 | INFO     | chi2: 8.577244724821519
[2025-11-28 19:42:24] 2025-11-28 18:41:34,990 | INFO     | current memory leak: 2.76 B/s (using 1346 data points, chi2=8.58)
[2025-11-28 19:42:24] 2025-11-28 18:41:34,991 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | ..............................
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | . Timing measurements:
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | . get job = 0 s
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | . initial setup = 10 s
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | . payload setup = 164 s
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | . stage-in = 0 s
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | . payload execution = 83224 s
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | . stage-out = 5 s
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | . log creation = 2 s
[2025-11-28 19:42:24] 2025-11-28 18:41:34,992 | INFO     | ..............................
[2025-11-28 19:42:24] 2025-11-28 18:41:35,345 | INFO     | 
[2025-11-28 19:42:24] 2025-11-28 18:41:35,345 | INFO     | job summary report
[2025-11-28 19:42:24] 2025-11-28 18:41:35,345 | INFO     | --------------------------------------------------
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | PanDA job id: 6896045950
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | task id: 47556185
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | errors: (none)
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | pilot state: finished 
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | transexitcode: 0
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | exeerrorcode: 0
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | exeerrordiag: 
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | exitcode: 0
[2025-11-28 19:42:24] 2025-11-28 18:41:35,346 | INFO     | exitmsg: OK
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | cpuconsumptiontime: 314606 s
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | nevents: 1000
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | neventsw: 0
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | pid: 18705
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | pgrp: 18705
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | corecount: 8
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | event service: False
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | sizes: {0: 2284140, 1: 2284339, 2: 2284339, 12: 2284367, 23: 2284395, 34: 2284423, 45: 2284579, 55: 2284607, 66: 2284635, 77: 2284663, 87: 2284719, 93: 2285289, 98
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | --------------------------------------------------
[2025-11-28 19:42:24] 2025-11-28 18:41:35,347 | INFO     | 
[2025-11-28 19:42:24] 2025-11-28 18:41:35,348 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-28 19:42:24] 2025-11-28 18:41:35,813 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,814 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,814 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,814 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,814 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,814 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,814 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,814 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,814 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,815 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 19:42:24] 2025-11-28 18:41:35,816 | INFO     | job 6896045950 has completed (purged errors)
[2025-11-28 19:42:24] 2025-11-28 18:41:35,816 | INFO     | overall cleanup function is called
[2025-11-28 19:42:24] 2025-11-28 18:41:36,837 | INFO     | --- collectZombieJob: --- 10, [18705]
[2025-11-28 19:42:24] 2025-11-28 18:41:36,837 | INFO     | zombie collector waiting for pid 18705
[2025-11-28 19:42:24] 2025-11-28 18:41:36,837 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 19:42:24] 2025-11-28 18:41:36,837 | INFO     | collected zombie processes
[2025-11-28 19:42:24] 2025-11-28 18:41:36,838 | INFO     | will attempt to kill all subprocesses of pid=18705
[2025-11-28 19:42:24] 2025-11-28 18:41:36,952 | INFO     | process IDs to be killed: [18705] (in reverse order)
[2025-11-28 19:42:24] 2025-11-28 18:41:37,486 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 19:42:24] 2025-11-28 18:41:37,486 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 19:42:24] 2025-11-28 18:41:37,489 | INFO     | did not find any defunct processes belonging to 18705
[2025-11-28 19:42:24] 2025-11-28 18:41:37,491 | INFO     | did not find any defunct processes belonging to 18705
[2025-11-28 19:42:24] 2025-11-28 18:41:37,564 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 19:42:24] 2025-11-28 18:41:37,565 | INFO     | ready for new job
[2025-11-28 19:42:24] 2025-11-28 18:41:37,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 19:42:24] 2025-11-28 18:41:37,570 | INFO     | ***************************************
[2025-11-28 19:42:24] 2025-11-28 18:41:37,570 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 19:42:24] 2025-11-28 18:41:37,570 | INFO     | ***************************************
[2025-11-28 19:42:24] 2025-11-28 18:41:37,570 | INFO     | 
[2025-11-28 19:42:24] 2025-11-28 18:41:37,570 | INFO     | pilot is running in a VM
[2025-11-28 19:42:24] 2025-11-28 18:41:37,571 | INFO     | architecture information:
[2025-11-28 19:42:24] 2025-11-28 18:41:37,577 | INFO     | executing command: cat /etc/os-release
[2025-11-28 19:42:24] 2025-11-28 18:41:37,775 | INFO     | cat /etc/os-release:
[2025-11-28 19:42:24] NAME="CentOS Linux"
[2025-11-28 19:42:24] VERSION="7 (Core)"
[2025-11-28 19:42:24] ID="centos"
[2025-11-28 19:42:24] ID_LIKE="rhel fedora"
[2025-11-28 19:42:24] VERSION_ID="7"
[2025-11-28 19:42:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 19:42:24] ANSI_COLOR="0;31"
[2025-11-28 19:42:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 19:42:24] HOME_URL="https://www.centos.org/"
[2025-11-28 19:42:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 19:42:24] 
[2025-11-28 19:42:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 19:42:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 19:42:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 19:42:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 19:42:24] 
[2025-11-28 19:42:24] 2025-11-28 18:41:37,776 | INFO     | ***************************************
[2025-11-28 19:42:24] 2025-11-28 18:41:38,279 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-28 19:42:24] 2025-11-28 18:41:38,451 | INFO     | sufficient remaining disk space (495439577088 B)
[2025-11-28 19:42:24] 2025-11-28 18:41:38,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 19:42:24] 2025-11-28 18:41:38,451 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 19:42:24] 2025-11-28 18:41:38,451 | INFO     | update_server=False
[2025-11-28 19:42:24] 2025-11-28 18:41:38,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 19:42:24] 2025-11-28 18:41:38,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 19:42:24] 2025-11-28 18:41:38,452 | INFO     | aborting loop
[2025-11-28 19:42:24] 2025-11-28 18:41:38,959 | INFO     | all data control threads have been joined
[2025-11-28 19:42:24] 2025-11-28 18:41:39,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 19:42:24] 2025-11-28 18:41:39,456 | INFO     | [job] retrieve thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:39,458 | INFO     | [job] job monitor thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:39,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:39,668 | INFO     | all payload control threads have been joined
[2025-11-28 19:42:24] 2025-11-28 18:41:39,775 | INFO     | all job control threads have been joined
[2025-11-28 19:42:24] 2025-11-28 18:41:39,965 | INFO     | [data] control thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 19:42:24] 2025-11-28 18:41:40,232 | INFO     | [data] copytool_in thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,330 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,366 | INFO     | [payload] validate_post thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,377 | INFO     | [job] validate thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,451 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,674 | INFO     | [payload] control thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,781 | INFO     | [job] control thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,816 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:40,828 | INFO     | [payload] failed_post thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:41,054 | INFO     | [data] copytool_out thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:41,137 | INFO     | [job] queue monitor thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:41:41,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 19:42:24] 2025-11-28 18:41:45,795 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 19:42:24] 2025-11-28 18:42:06,984 | INFO     | PID=12159 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 19:42:24] 2025-11-28 18:42:06,984 | INFO     | .. there are 9 such processes running
[2025-11-28 19:42:24] 2025-11-28 18:42:06,985 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 19:42:24] 2025-11-28 18:42:06,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 19:42:24] 2025-11-28 18:42:06,985 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 19:42:24] 2025-11-28 18:42:15,386 | INFO     | [monitor] cgroup control has ended
[2025-11-28 19:42:24] 2025-11-28 18:42:15,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398389180224)>', '<ExcThread(monitor, started 140397942646528)>']
[2025-11-28 19:42:24] 2025-11-28 18:42:16,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 19:42:24] 2025-11-28 18:42:16,039 | INFO     | [monitor] control thread has ended
[2025-11-28 19:42:24] 2025-11-28 18:42:20,849 | INFO     | all workflow threads have been joined
[2025-11-28 19:42:24] 2025-11-28 18:42:20,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 19:42:24] 2025-11-28 18:42:20,850 | INFO     | traces error code: 0
[2025-11-28 19:42:24] 2025-11-28 18:42:20,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 19:42:24] 2025-11-28 18:42:21,271 [wrapper] ==== pilot stdout END ====
[2025-11-28 19:42:24] 2025-11-28 18:42:21,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 19:42:24] 2025-11-28 18:42:21,460 [wrapper] pilotpid: 12159
[2025-11-28 19:42:24] 2025-11-28 18:42:21,567 [wrapper] Pilot exit status: 0
[2025-11-28 19:42:24] 2025-11-28 18:42:21,818 [wrapper] pandaids: 6896045950
[2025-11-28 19:42:24] 2025-11-28 18:42:22,184 [wrapper] cleanup supervisor_pilot  4207 12160
[2025-11-28 19:42:24] 2025-11-28 18:42:22,208 [wrapper] Test setup, not cleaning
[2025-11-28 19:42:24] 2025-11-28 18:42:22,211 [wrapper] apfmon messages muted
[2025-11-28 19:42:24] 2025-11-28 18:42:22,213 [wrapper] ==== wrapper stdout END ====
[2025-11-28 19:42:24] 2025-11-28 18:42:22,216 [wrapper] ==== wrapper stderr END ====
[2025-11-28 19:42:24]  *** Error codes and diagnostics ***
[2025-11-28 19:42:24]     "exeErrorCode": 0,
[2025-11-28 19:42:24]     "exeErrorDiag": "",
[2025-11-28 19:42:24]     "pilotErrorCode": 0,
[2025-11-28 19:42:24]     "pilotErrorDiag": "",
[2025-11-28 19:42:24]  *** Listing of results directory ***
[2025-11-28 19:42:24] total 1336496
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc    576529 Nov 24 20:02 pilot3.tar.gz
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc      5112 Nov 24 20:11 queuedata.json
[2025-11-28 19:42:24] -rwx------. 1 boinc boinc     36292 Nov 24 20:12 runpilot2-wrapper.sh
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc       100 Nov 27 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 19:42:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 20:22 run_atlas
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc       105 Nov 27 20:22 job.xml
[2025-11-28 19:42:24] -rw-r--r--. 2 boinc boinc 410263963 Nov 27 20:22 EVNT.47483658._004241.pool.root.1
[2025-11-28 19:42:24] -rw-r--r--. 2 boinc boinc     15847 Nov 27 20:22 start_atlas.sh
[2025-11-28 19:42:24] drwxrwx--x. 2 boinc boinc        68 Nov 27 20:22 shared
[2025-11-28 19:42:24] -rw-r--r--. 2 boinc boinc    590103 Nov 27 20:22 input.tar.gz
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc      6392 Nov 27 20:22 init_data.xml
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc         0 Nov 27 20:22 boinc_lockfile
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc      2783 Nov 27 20:22 pandaJob.out
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc    991191 Nov 27 20:26 agis_schedconf.cvmfs.json
[2025-11-28 19:42:24] drwx------. 5 boinc boinc      4096 Nov 27 20:26 pilot3
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc       533 Nov 28 19:15 boinc_task_state.xml
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc 927221061 Nov 28 19:38 HITS.47556185._000047.pool.root.1
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc      1032 Nov 28 19:39 memory_monitor_summary.json
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc   1516240 Nov 28 19:39 agis_ddmendpoints.agis.ALL.json
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc   2443983 Nov 28 19:39 log.47556185._000047.job.log.tgz.1
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc      8625 Nov 28 19:41 heartbeat.json
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc      8192 Nov 28 19:42 boinc_mmap_file
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc        29 Nov 28 19:42 wrapper_checkpoint.txt
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc        95 Nov 28 19:42 pilot_heartbeat.json
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc      4885 Nov 28 19:42 pilotlog.txt
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc  11148614 Nov 28 19:42 log.47556185._000047.job.log.1
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc       353 Nov 28 19:42 output.list
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc       620 Nov 28 19:42 runtime_log
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc  13608960 Nov 28 19:42 result.tar.gz
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc      8833 Nov 28 19:42 runtime_log.err
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc       662 Nov 28 19:42 erZNDmnArh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeAJKDmPyFROo.diag
[2025-11-28 19:42:24] -rw-r--r--. 1 boinc boinc     21376 Nov 28 19:42 stderr.txt
[2025-11-28 19:42:24] HITS file was successfully produced:
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc 927221061 Nov 28 19:38 shared/HITS.pool.root.1
[2025-11-28 19:42:24]  *** Contents of shared directory: ***
[2025-11-28 19:42:24] total 1320032
[2025-11-28 19:42:24] -rw-r--r--. 2 boinc boinc 410263963 Nov 27 20:22 ATLAS.root_0
[2025-11-28 19:42:24] -rw-r--r--. 2 boinc boinc     15847 Nov 27 20:22 start_atlas.sh
[2025-11-28 19:42:24] -rw-r--r--. 2 boinc boinc    590103 Nov 27 20:22 input.tar.gz
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc 927221061 Nov 28 19:38 HITS.pool.root.1
[2025-11-28 19:42:24] -rw-------. 1 boinc boinc  13608960 Nov 28 19:42 result.tar.gz
19:42:25 (8378): run_atlas exited; CPU time 315177.139318
19:42:25 (8378): called boinc_finish(0)

</stderr_txt>
]]>

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