Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:27 (214362): wrapper (7.7.26015): starting
00:04:27 (214362): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:27] Arguments: --nthreads 9
[2025-11-26 00:04:27] Threads: 9
[2025-11-26 00:04:27] Checking for CVMFS
[2025-11-26 00:04:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:30] 2.13.2.0 9630 33397 205112 153309 3 357 33543513 39288832 8618 16776704 0 23064850 99.578 22296049 31762 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:30] CVMFS is ok
[2025-11-26 00:04:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:30] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:30] Checking for apptainer binary...
[2025-11-26 00:04:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:30] Running /usr/bin/apptainer --version
[2025-11-26 00:04:30] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:30] c-211-17.aglt2.org
[2025-11-26 00:04:30] apptainer works
[2025-11-26 00:04:31] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:31] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:31] Starting ATLAS job with PandaID=6896044956
[2025-11-26 00:04:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:48:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:48:42] 2025-11-27 16:47:46,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:48:42] 2025-11-27 16:47:47,945 | INFO     | time since job start (128534s) is within the limit (172800.0s)
[2025-11-27 11:48:42] 2025-11-27 16:47:49,315 | INFO     | monitor loop #7684: job 0:6896044956 is in state 'finished'
[2025-11-27 11:48:42] 2025-11-27 16:47:49,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:48:42] 2025-11-27 16:47:49,954 | INFO     | time since job start (128536s) is within the limit (172800.0s)
[2025-11-27 11:48:42] 2025-11-27 16:47:51,820 | INFO     | monitor loop #7685: job 0:6896044956 is in state 'finished'
[2025-11-27 11:48:42] 2025-11-27 16:47:51,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:48:42] 2025-11-27 16:47:51,963 | INFO     | time since job start (128538s) is within the limit (172800.0s)
[2025-11-27 11:48:42] 2025-11-27 16:47:53,978 | INFO     | time since job start (128540s) is within the limit (172800.0s)
[2025-11-27 11:48:42] 2025-11-27 16:47:54,324 | INFO     | monitor loop #7686: job 0:6896044956 is in state 'finished'
[2025-11-27 11:48:42] 2025-11-27 16:47:54,325 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:48:42] 2025-11-27 16:47:56,002 | INFO     | time since job start (128543s) is within the limit (172800.0s)
[2025-11-27 11:48:42] 2025-11-27 16:47:56,834 | INFO     | monitor loop #7687: job 0:6896044956 is in state 'finished'
[2025-11-27 11:48:42] 2025-11-27 16:47:56,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:48:42] 2025-11-27 16:47:57,433 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 11:48:42] 2025-11-27 16:47:57,444 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8799249999997
[2025-11-27 11:48:42] 2025-11-27 16:47:57,467 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896044956/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:48:42] 2025-11-27 16:47:57,468 | INFO     | extracted standard info from prmon json
[2025-11-27 11:48:42] 2025-11-27 16:47:57,468 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:48:42] 2025-11-27 16:47:57,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:48:42] 2025-11-27 16:47:57,625 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:48:42] 2025-11-27 16:47:57,632 | INFO     | sum of square deviations: 2892085000424.271
[2025-11-27 11:48:42] 2025-11-27 16:47:57,746 | INFO     | sum of deviations: 13592693883083.88
[2025-11-27 11:48:42] 2025-11-27 16:47:57,747 | INFO     | mean x: 1764197857.0565321
[2025-11-27 11:48:42] 2025-11-27 16:47:57,747 | INFO     | mean y: 3048426.4380047508
[2025-11-27 11:48:42] 2025-11-27 16:47:57,747 | INFO     | intersect: -8288617073.242711
[2025-11-27 11:48:42] 2025-11-27 16:47:57,751 | INFO     | chi2: 21.024562321696184
[2025-11-27 11:48:42] 2025-11-27 16:47:57,754 | INFO     | sum of square deviations: 2871528000850.4297
[2025-11-27 11:48:42] 2025-11-27 16:47:57,989 | INFO     | sum of deviations: 14347690019720.72
[2025-11-27 11:48:42] 2025-11-27 16:47:57,989 | INFO     | mean x: 1764197704.5709524
[2025-11-27 11:48:42] 2025-11-27 16:47:57,989 | INFO     | mean y: 3054026.5623809523
[2025-11-27 11:48:42] 2025-11-27 16:47:57,990 | INFO     | intersect: -8811821465.228199
[2025-11-27 11:48:42] 2025-11-27 16:47:58,001 | INFO     | chi2: 17.83211028111524
[2025-11-27 11:48:42] 2025-11-27 16:47:58,001 | INFO     | current chi2=17.83211028111524 (change=15.184392387024909 %)
[2025-11-27 11:48:42] 2025-11-27 16:47:58,001 | INFO     | right removable region: 2099
[2025-11-27 11:48:42] 2025-11-27 16:47:58,004 | INFO     | sum of square deviations: 2871520352254.5693
[2025-11-27 11:48:42] 2025-11-27 16:47:58,039 | INFO     | time since job start (128545s) is within the limit (172800.0s)
[2025-11-27 11:48:42] 2025-11-27 16:47:58,403 | INFO     | sum of deviations: 12734716298209.713
[2025-11-27 11:48:42] 2025-11-27 16:47:58,404 | INFO     | mean x: 1764198009.5704763
[2025-11-27 11:48:42] 2025-11-27 16:47:58,404 | INFO     | mean y: 3054788.9242857145
[2025-11-27 11:48:42] 2025-11-27 16:47:58,408 | INFO     | intersect: -7820870654.650125
[2025-11-27 11:48:42] 2025-11-27 16:47:58,411 | INFO     | chi2: 17.17817583400538
[2025-11-27 11:48:42] 2025-11-27 16:47:58,412 | INFO     | current chi2=17.17817583400538 (change=18.294727989279217 %)
[2025-11-27 11:48:42] 2025-11-27 16:47:58,412 | INFO     | left removable region: 10
[2025-11-27 11:48:42] 2025-11-27 16:47:58,419 | INFO     | sum of square deviations: 2826630796935.2817
[2025-11-27 11:48:42] 2025-11-27 16:47:58,658 | INFO     | sum of deviations: 12873668120450.795
[2025-11-27 11:48:42] 2025-11-27 16:47:58,658 | INFO     | mean x: 1764197979.1019626
[2025-11-27 11:48:42] 2025-11-27 16:47:58,658 | INFO     | mean y: 3067647.8319770223
[2025-11-27 11:48:42] 2025-11-27 16:47:58,658 | INFO     | intersect: -8031833587.360592
[2025-11-27 11:48:42] 2025-11-27 16:47:58,665 | INFO     | chi2: 9.973763041691825
[2025-11-27 11:48:42] 2025-11-27 16:47:58,666 | INFO     | current memory leak: 4.55 B/s (using 2089 data points, chi2=9.97)
[2025-11-27 11:48:42] 2025-11-27 16:47:58,668 | INFO     | could have reported an average CPU frequency of 2599 MHz (73 samples)
[2025-11-27 11:48:42] 2025-11-27 16:47:58,668 | INFO     | ..............................
[2025-11-27 11:48:42] 2025-11-27 16:47:58,668 | INFO     | . Timing measurements:
[2025-11-27 11:48:42] 2025-11-27 16:47:58,668 | INFO     | . get job = 0 s
[2025-11-27 11:48:42] 2025-11-27 16:47:58,669 | INFO     | . initial setup = 4 s
[2025-11-27 11:48:42] 2025-11-27 16:47:58,669 | INFO     | . payload setup = 48 s
[2025-11-27 11:48:42] 2025-11-27 16:47:58,669 | INFO     | . stage-in = 0 s
[2025-11-27 11:48:42] 2025-11-27 16:47:58,669 | INFO     | . payload execution = 128403 s
[2025-11-27 11:48:42] 2025-11-27 16:47:58,669 | INFO     | . stage-out = 7 s
[2025-11-27 11:48:42] 2025-11-27 16:47:58,669 | INFO     | . log creation = 1 s
[2025-11-27 11:48:42] 2025-11-27 16:47:58,673 | INFO     | ..............................
[2025-11-27 11:48:42] 2025-11-27 16:47:58,911 | INFO     | 
[2025-11-27 11:48:42] 2025-11-27 16:47:58,911 | INFO     | job summary report
[2025-11-27 11:48:42] 2025-11-27 16:47:58,911 | INFO     | --------------------------------------------------
[2025-11-27 11:48:42] 2025-11-27 16:47:58,911 | INFO     | PanDA job id: 6896044956
[2025-11-27 11:48:42] 2025-11-27 16:47:58,912 | INFO     | task id: 47556173
[2025-11-27 11:48:42] 2025-11-27 16:47:58,912 | INFO     | errors: (none)
[2025-11-27 11:48:42] 2025-11-27 16:47:58,912 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:48:42] 2025-11-27 16:47:58,912 | INFO     | pilot state: finished 
[2025-11-27 11:48:42] 2025-11-27 16:47:58,912 | INFO     | transexitcode: 0
[2025-11-27 11:48:42] 2025-11-27 16:47:58,920 | INFO     | exeerrorcode: 0
[2025-11-27 11:48:42] 2025-11-27 16:47:58,920 | INFO     | exeerrordiag: 
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | exitcode: 0
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | exitmsg: OK
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | cpuconsumptiontime: 320849 s
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | nevents: 1000
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | neventsw: 0
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | pid: 226929
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | pgrp: 226929
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | corecount: 9
[2025-11-27 11:48:42] 2025-11-27 16:47:58,921 | INFO     | event service: False
[2025-11-27 11:48:42] 2025-11-27 16:47:58,922 | INFO     | sizes: {0: 2284086, 1: 2284170, 2: 2284198, 3: 2284369, 14: 2284397, 25: 2284425, 28: 2284843, 35: 2284871, 128456: 2368856, 128457: 2368855, 128464: 2377905, 1284
[2025-11-27 11:48:42] 2025-11-27 16:47:58,922 | INFO     | --------------------------------------------------
[2025-11-27 11:48:42] 2025-11-27 16:47:58,922 | INFO     | 
[2025-11-27 11:48:42] 2025-11-27 16:47:58,922 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 11:48:42] 2025-11-27 16:47:58,974 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,974 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,974 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,975 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,975 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,975 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,975 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,975 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,975 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,976 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:48:42] 2025-11-27 16:47:58,977 | INFO     | job 6896044956 has completed (purged errors)
[2025-11-27 11:48:42] 2025-11-27 16:47:58,977 | INFO     | overall cleanup function is called
[2025-11-27 11:48:42] 2025-11-27 16:47:59,998 | INFO     | --- collectZombieJob: --- 10, [226929]
[2025-11-27 11:48:42] 2025-11-27 16:47:59,999 | INFO     | zombie collector waiting for pid 226929
[2025-11-27 11:48:42] 2025-11-27 16:47:59,999 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:48:42] 2025-11-27 16:47:59,999 | INFO     | collected zombie processes
[2025-11-27 11:48:42] 2025-11-27 16:47:59,999 | INFO     | will attempt to kill all subprocesses of pid=226929
[2025-11-27 11:48:42] 2025-11-27 16:48:00,922 | INFO     | process IDs to be killed: [226929] (in reverse order)
[2025-11-27 11:48:42] 2025-11-27 16:48:01,040 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:48:42] 2025-11-27 16:48:01,040 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:48:42] 2025-11-27 16:48:01,074 | INFO     | did not find any defunct processes belonging to 226929
[2025-11-27 11:48:42] 2025-11-27 16:48:01,099 | INFO     | did not find any defunct processes belonging to 226929
[2025-11-27 11:48:42] 2025-11-27 16:48:01,111 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:48:42] 2025-11-27 16:48:01,112 | INFO     | ready for new job
[2025-11-27 11:48:42] 2025-11-27 16:48:01,112 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:48:42] 2025-11-27 16:48:01,137 | INFO     | ***************************************
[2025-11-27 11:48:42] 2025-11-27 16:48:01,138 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:48:42] 2025-11-27 16:48:01,138 | INFO     | ***************************************
[2025-11-27 11:48:42] 2025-11-27 16:48:01,138 | INFO     | 
[2025-11-27 11:48:42] 2025-11-27 16:48:01,148 | INFO     | architecture information:
[2025-11-27 11:48:42] 2025-11-27 16:48:01,152 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:48:42] 2025-11-27 16:48:01,193 | INFO     | cat /etc/os-release:
[2025-11-27 11:48:42] NAME="CentOS Linux"
[2025-11-27 11:48:42] VERSION="7 (Core)"
[2025-11-27 11:48:42] ID="centos"
[2025-11-27 11:48:42] ID_LIKE="rhel fedora"
[2025-11-27 11:48:42] VERSION_ID="7"
[2025-11-27 11:48:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:48:42] ANSI_COLOR="0;31"
[2025-11-27 11:48:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:48:42] HOME_URL="https://www.centos.org/"
[2025-11-27 11:48:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:48:42] 
[2025-11-27 11:48:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:48:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:48:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:48:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:48:42] 
[2025-11-27 11:48:42] 2025-11-27 16:48:01,193 | INFO     | ***************************************
[2025-11-27 11:48:42] 2025-11-27 16:48:01,698 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 11:48:42] 2025-11-27 16:48:01,745 | INFO     | sufficient remaining disk space (49352278016 B)
[2025-11-27 11:48:42] 2025-11-27 16:48:01,745 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:48:42] 2025-11-27 16:48:01,745 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:48:42] 2025-11-27 16:48:01,745 | INFO     | update_server=False
[2025-11-27 11:48:42] 2025-11-27 16:48:01,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:48:42] 2025-11-27 16:48:01,885 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 11:48:42] 2025-11-27 16:48:01,886 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 11:48:42] 2025-11-27 16:48:01,886 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:48:42] 2025-11-27 16:48:01,886 | INFO     | will abort loop
[2025-11-27 11:48:42] 2025-11-27 16:48:02,301 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:48:42] 2025-11-27 16:48:02,473 | INFO     | all payload control threads have been joined
[2025-11-27 11:48:42] 2025-11-27 16:48:02,725 | INFO     | all data control threads have been joined
[2025-11-27 11:48:42] 2025-11-27 16:48:02,752 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:02,777 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:02,788 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:02,824 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:02,891 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:03,067 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:03,367 | INFO     | all job control threads have been joined
[2025-11-27 11:48:42] 2025-11-27 16:48:03,442 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:03,451 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:03,480 | INFO     | [payload] control thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:03,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:48:42] 2025-11-27 16:48:03,731 | INFO     | [data] control thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:03,907 | INFO     | [job] validate thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:03,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:48:42] 2025-11-27 16:48:04,113 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:04,309 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:04,373 | INFO     | [job] control thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:04,949 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:07,578 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:48:42] 2025-11-27 16:48:31,443 | INFO     | PID=219746 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 11:48:42] 2025-11-27 16:48:31,443 | INFO     | .. there are 8 such processes running
[2025-11-27 11:48:42] 2025-11-27 16:48:31,443 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:48:42] 2025-11-27 16:48:31,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:48:42] 2025-11-27 16:48:31,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:48:42] 2025-11-27 16:48:35,931 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:48:42] 2025-11-27 16:48:36,600 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659293390656)>', '<ExcThread(monitor, started 139658579146496)>']
[2025-11-27 11:48:42] 2025-11-27 16:48:37,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:48:42] 2025-11-27 16:48:37,480 | INFO     | [monitor] control thread has ended
[2025-11-27 11:48:42] 2025-11-27 16:48:41,626 | INFO     | all workflow threads have been joined
[2025-11-27 11:48:42] 2025-11-27 16:48:41,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:48:42] 2025-11-27 16:48:41,627 | INFO     | traces error code: 0
[2025-11-27 11:48:42] 2025-11-27 16:48:41,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:48:42] 2025-11-27 16:48:42,013 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:48:42] 2025-11-27 16:48:42,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:48:42] 2025-11-27 16:48:42,048 [wrapper] pilotpid: 219746
[2025-11-27 11:48:42] 2025-11-27 16:48:42,104 [wrapper] Pilot exit status: 0
[2025-11-27 11:48:42] 2025-11-27 16:48:42,288 [wrapper] pandaids: 6896044956
[2025-11-27 11:48:42] 2025-11-27 16:48:42,451 [wrapper] cleanup supervisor_pilot 3210380 219747
[2025-11-27 11:48:42] 2025-11-27 16:48:42,456 [wrapper] Test setup, not cleaning
[2025-11-27 11:48:42] 2025-11-27 16:48:42,459 [wrapper] apfmon messages muted
[2025-11-27 11:48:42] 2025-11-27 16:48:42,463 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:48:42] 2025-11-27 16:48:42,466 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:48:42]  *** Error codes and diagnostics ***
[2025-11-27 11:48:42]     "exeErrorCode": 0,
[2025-11-27 11:48:42]     "exeErrorDiag": "",
[2025-11-27 11:48:42]     "pilotErrorCode": 0,
[2025-11-27 11:48:42]     "pilotErrorDiag": "",
[2025-11-27 11:48:42]  *** Listing of results directory ***
[2025-11-27 11:48:42] total 1341020
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:41 queuedata.json
[2025-11-27 11:48:42] -rwx------. 1 boincer umatlas     36292 Nov 24 13:45 runpilot2-wrapper.sh
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:48:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 11:48:42] -rw-r--r--. 2 boincer umatlas 410126079 Nov 26 00:04 EVNT.47483658._003032.pool.root.1
[2025-11-27 11:48:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 11:48:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 11:48:42] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:04 input.tar.gz
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:04 pandaJob.out
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-27 11:48:42] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas       533 Nov 27 11:27 boinc_task_state.xml
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas 920590426 Nov 27 11:46 HITS.47556173._000146.pool.root.1
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 11:47 init_data.xml
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas      1062 Nov 27 11:47 memory_monitor_summary.json
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:47 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas   3062776 Nov 27 11:47 log.47556173._000146.job.log.tgz.1
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas        95 Nov 27 11:47 pilot_heartbeat.json
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas      8638 Nov 27 11:47 heartbeat.json
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:48 boinc_mmap_file
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:48 wrapper_checkpoint.txt
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas      5008 Nov 27 11:48 pilotlog.txt
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas  16216446 Nov 27 11:48 log.47556173._000146.job.log.1
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas       353 Nov 27 11:48 output.list
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:48 runtime_log
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas  19302400 Nov 27 11:48 result.tar.gz
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas      9344 Nov 27 11:48 runtime_log.err
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas       664 Nov 27 11:48 PUdLDmqjqh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqqLKDmc4WI6n.diag
[2025-11-27 11:48:42] -rw-r--r--. 1 boincer umatlas     21801 Nov 27 11:48 stderr.txt
[2025-11-27 11:48:42] HITS file was successfully produced:
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas 920590426 Nov 27 11:46 shared/HITS.pool.root.1
[2025-11-27 11:48:42]  *** Contents of shared directory: ***
[2025-11-27 11:48:42] total 1318988
[2025-11-27 11:48:42] -rw-r--r--. 2 boincer umatlas 410126079 Nov 26 00:04 ATLAS.root_0
[2025-11-27 11:48:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 11:48:42] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:04 input.tar.gz
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas 920590426 Nov 27 11:46 HITS.pool.root.1
[2025-11-27 11:48:42] -rw-------. 1 boincer umatlas  19302400 Nov 27 11:48 result.tar.gz
11:48:44 (214362): run_atlas exited; CPU time 322496.182444
11:48:44 (214362): called boinc_finish(0)

</stderr_txt>
]]>

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