Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:53:57 (22979): wrapper (7.7.26015): starting
03:53:57 (22979): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 03:53:57] Arguments: --nthreads 8
[2025-11-28 03:53:57] Threads: 8
[2025-11-28 03:53:57] Checking for CVMFS
[2025-11-28 03:53:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 03:53:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 03:53:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 03:53:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 03:53:59] 2.11.2.0 1038 174481 134628 153393 1 85 21167627 25165824 1288 130560 10 57252626 99.891 27942494 2280 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 03:53:59] CVMFS is ok
[2025-11-28 03:53:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 03:53:59] Checking for apptainer binary...
[2025-11-28 03:53:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 03:53:59] Running /usr/bin/apptainer --version
[2025-11-28 03:53:59] apptainer version 1.3.2-1.el7
[2025-11-28 03:53:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 03:54:09] cg-vwn304.simple-grid.lan
[2025-11-28 03:54:09] apptainer works
[2025-11-28 03:54:09] Set ATHENA_PROC_NUMBER=8
[2025-11-28 03:54:09] Set ATHENA_CORE_NUMBER=8
[2025-11-28 03:54:09] Starting ATLAS job with PandaID=6896045904
[2025-11-28 03:54:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 03:44:33]  *** The last 200 lines of the pilot log: ***
[2025-11-29 03:44:33] 2025-11-29 02:43:29,452 | INFO     | PID=26787 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 03:44:33] 2025-11-29 02:43:29,452 | INFO     | .. there are 9 such processes running
[2025-11-29 03:44:33] 2025-11-29 02:43:30,453 | INFO     | time since job start (85536s) is within the limit (172800.0s)
[2025-11-29 03:44:33] 2025-11-29 02:43:31,891 | INFO     | monitor loop #5780: job 0:6896045904 is in state 'finished'
[2025-11-29 03:44:33] 2025-11-29 02:43:31,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 03:44:33] 2025-11-29 02:43:32,460 | INFO     | time since job start (85538s) is within the limit (172800.0s)
[2025-11-29 03:44:33] 2025-11-29 02:43:34,395 | INFO     | monitor loop #5781: job 0:6896045904 is in state 'finished'
[2025-11-29 03:44:33] 2025-11-29 02:43:34,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 03:44:33] 2025-11-29 02:43:34,467 | INFO     | time since job start (85540s) is within the limit (172800.0s)
[2025-11-29 03:44:33] 2025-11-29 02:43:36,474 | INFO     | time since job start (85542s) is within the limit (172800.0s)
[2025-11-29 03:44:33] 2025-11-29 02:43:36,900 | INFO     | monitor loop #5782: job 0:6896045904 is in state 'finished'
[2025-11-29 03:44:33] 2025-11-29 02:43:36,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 03:44:33] 2025-11-29 02:43:38,480 | INFO     | time since job start (85544s) is within the limit (172800.0s)
[2025-11-29 03:44:33] 2025-11-29 02:43:39,118 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 03:44:33] 2025-11-29 02:43:39,121 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-29 03:44:33] 2025-11-29 02:43:39,124 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6896045904/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 03:44:33] 2025-11-29 02:43:39,125 | INFO     | extracted standard info from prmon json
[2025-11-29 03:44:33] 2025-11-29 02:43:39,125 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 03:44:33] 2025-11-29 02:43:39,125 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 03:44:33] 2025-11-29 02:43:39,154 | INFO     | fitting pss+swap vs Time
[2025-11-29 03:44:33] 2025-11-29 02:43:39,161 | INFO     | sum of square deviations: 838168766079.4875
[2025-11-29 03:44:33] 2025-11-29 02:43:39,279 | INFO     | sum of deviations: 2760056346001.5825
[2025-11-29 03:44:33] 2025-11-29 02:43:39,279 | INFO     | mean x: 1764341641.1055276
[2025-11-29 03:44:33] 2025-11-29 02:43:39,279 | INFO     | mean y: 2843032.8600143576
[2025-11-29 03:44:33] 2025-11-29 02:43:39,279 | INFO     | intersect: -5807063682.974757
[2025-11-29 03:44:33] 2025-11-29 02:43:39,281 | INFO     | chi2: 23.387537728985517
[2025-11-29 03:44:33] 2025-11-29 02:43:39,283 | INFO     | sum of square deviations: 829176081108.3549
[2025-11-29 03:44:33] 2025-11-29 02:43:39,354 | INFO     | sum of deviations: 3223873096058.1074
[2025-11-29 03:44:33] 2025-11-29 02:43:39,354 | INFO     | mean x: 1764341488.6095102
[2025-11-29 03:44:33] 2025-11-29 02:43:39,354 | INFO     | mean y: 2850896.824927954
[2025-11-29 03:44:33] 2025-11-29 02:43:39,354 | INFO     | intersect: -6856986460.982327
[2025-11-29 03:44:33] 2025-11-29 02:43:39,356 | INFO     | chi2: 20.13344081832332
[2025-11-29 03:44:33] 2025-11-29 02:43:39,356 | INFO     | current chi2=20.13344081832332 (change=13.91380720950889 %)
[2025-11-29 03:44:33] 2025-11-29 02:43:39,356 | INFO     | right removable region: 1387
[2025-11-29 03:44:33] 2025-11-29 02:43:39,358 | INFO     | sum of square deviations: 829175141708.3544
[2025-11-29 03:44:33] 2025-11-29 02:43:39,416 | INFO     | sum of deviations: 2178706777367.113
[2025-11-29 03:44:33] 2025-11-29 02:43:39,417 | INFO     | mean x: 1764341793.6095102
[2025-11-29 03:44:33] 2025-11-29 02:43:39,417 | INFO     | mean y: 2852889.976224784
[2025-11-29 03:44:33] 2025-11-29 02:43:39,417 | INFO     | intersect: -4633059633.17215
[2025-11-29 03:44:33] 2025-11-29 02:43:39,419 | INFO     | chi2: 18.74902898713356
[2025-11-29 03:44:33] 2025-11-29 02:43:39,419 | INFO     | current chi2=18.74902898713356 (change=19.83324963749043 %)
[2025-11-29 03:44:33] 2025-11-29 02:43:39,419 | INFO     | left removable region: 10
[2025-11-29 03:44:33] 2025-11-29 02:43:39,421 | INFO     | sum of square deviations: 809617216835.7056
[2025-11-29 03:44:33] 2025-11-29 02:43:39,448 | INFO     | monitor loop #5783: job 0:6896045904 is in state 'finished'
[2025-11-29 03:44:33] 2025-11-29 02:43:39,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 03:44:33] 2025-11-29 02:43:39,484 | INFO     | sum of deviations: 2249992528434.4404
[2025-11-29 03:44:33] 2025-11-29 02:43:39,484 | INFO     | mean x: 1764341763.1183734
[2025-11-29 03:44:33] 2025-11-29 02:43:39,484 | INFO     | mean y: 2871269.7334785764
[2025-11-29 03:44:33] 2025-11-29 02:43:39,484 | INFO     | intersect: -4900378935.513533
[2025-11-29 03:44:33] 2025-11-29 02:43:39,486 | INFO     | chi2: 11.262465302784845
[2025-11-29 03:44:33] 2025-11-29 02:43:39,486 | INFO     | current memory leak: 2.78 B/s (using 1377 data points, chi2=11.26)
[2025-11-29 03:44:33] 2025-11-29 02:43:39,487 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | ..............................
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | . Timing measurements:
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | . get job = 0 s
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | . initial setup = 13 s
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | . payload setup = 171 s
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | . stage-in = 0 s
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | . payload execution = 85068 s
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | . stage-out = 12 s
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | . log creation = 2 s
[2025-11-29 03:44:33] 2025-11-29 02:43:39,488 | INFO     | ..............................
[2025-11-29 03:44:33] 2025-11-29 02:43:39,635 | INFO     | 
[2025-11-29 03:44:33] 2025-11-29 02:43:39,635 | INFO     | job summary report
[2025-11-29 03:44:33] 2025-11-29 02:43:39,635 | INFO     | --------------------------------------------------
[2025-11-29 03:44:33] 2025-11-29 02:43:39,635 | INFO     | PanDA job id: 6896045904
[2025-11-29 03:44:33] 2025-11-29 02:43:39,635 | INFO     | task id: 47556173
[2025-11-29 03:44:33] 2025-11-29 02:43:39,635 | INFO     | errors: (none)
[2025-11-29 03:44:33] 2025-11-29 02:43:39,635 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | pilot state: finished 
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | transexitcode: 0
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | exeerrorcode: 0
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | exeerrordiag: 
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | exitcode: 0
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | exitmsg: OK
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | cpuconsumptiontime: 317018 s
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | nevents: 1000
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | neventsw: 0
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | pid: 999
[2025-11-29 03:44:33] 2025-11-29 02:43:39,636 | INFO     | pgrp: 999
[2025-11-29 03:44:33] 2025-11-29 02:43:39,637 | INFO     | corecount: 8
[2025-11-29 03:44:33] 2025-11-29 02:43:39,637 | INFO     | event service: False
[2025-11-29 03:44:33] 2025-11-29 02:43:39,637 | INFO     | sizes: {0: 2284142, 1: 2284341, 12: 2284341, 23: 2284369, 34: 2284397, 44: 2284425, 55: 2284581, 66: 2284609, 76: 2284637, 87: 2284693, 94: 2284983, 98: 2285291, 8
[2025-11-29 03:44:33] 2025-11-29 02:43:39,637 | INFO     | --------------------------------------------------
[2025-11-29 03:44:33] 2025-11-29 02:43:39,637 | INFO     | 
[2025-11-29 03:44:33] 2025-11-29 02:43:39,637 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-29 03:44:33] 2025-11-29 02:43:40,045 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,045 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,046 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,047 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,047 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,047 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,047 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 03:44:33] 2025-11-29 02:43:40,047 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,047 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 03:44:33] 2025-11-29 02:43:40,047 | INFO     | job 6896045904 has completed (purged errors)
[2025-11-29 03:44:33] 2025-11-29 02:43:40,047 | INFO     | overall cleanup function is called
[2025-11-29 03:44:33] 2025-11-29 02:43:41,063 | INFO     | --- collectZombieJob: --- 10, [999]
[2025-11-29 03:44:33] 2025-11-29 02:43:41,063 | INFO     | zombie collector waiting for pid 999
[2025-11-29 03:44:33] 2025-11-29 02:43:41,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 03:44:33] 2025-11-29 02:43:41,063 | INFO     | collected zombie processes
[2025-11-29 03:44:33] 2025-11-29 02:43:41,063 | INFO     | will attempt to kill all subprocesses of pid=999
[2025-11-29 03:44:33] 2025-11-29 02:43:41,182 | INFO     | process IDs to be killed: [999] (in reverse order)
[2025-11-29 03:44:33] 2025-11-29 02:43:41,987 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 03:44:33] 2025-11-29 02:43:41,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 03:44:33] 2025-11-29 02:43:41,991 | INFO     | did not find any defunct processes belonging to 999
[2025-11-29 03:44:33] 2025-11-29 02:43:41,993 | INFO     | did not find any defunct processes belonging to 999
[2025-11-29 03:44:33] 2025-11-29 02:43:42,040 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 03:44:33] 2025-11-29 02:43:42,040 | INFO     | ready for new job
[2025-11-29 03:44:33] 2025-11-29 02:43:42,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 03:44:33] 2025-11-29 02:43:42,048 | INFO     | ***************************************
[2025-11-29 03:44:33] 2025-11-29 02:43:42,049 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 03:44:33] 2025-11-29 02:43:42,049 | INFO     | ***************************************
[2025-11-29 03:44:33] 2025-11-29 02:43:42,049 | INFO     | 
[2025-11-29 03:44:33] 2025-11-29 02:43:42,049 | INFO     | pilot is running in a VM
[2025-11-29 03:44:33] 2025-11-29 02:43:42,050 | INFO     | architecture information:
[2025-11-29 03:44:33] 2025-11-29 02:43:42,059 | INFO     | executing command: cat /etc/os-release
[2025-11-29 03:44:33] 2025-11-29 02:43:42,381 | INFO     | cat /etc/os-release:
[2025-11-29 03:44:33] NAME="CentOS Linux"
[2025-11-29 03:44:33] VERSION="7 (Core)"
[2025-11-29 03:44:33] ID="centos"
[2025-11-29 03:44:33] ID_LIKE="rhel fedora"
[2025-11-29 03:44:33] VERSION_ID="7"
[2025-11-29 03:44:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 03:44:33] ANSI_COLOR="0;31"
[2025-11-29 03:44:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 03:44:33] HOME_URL="https://www.centos.org/"
[2025-11-29 03:44:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 03:44:33] 
[2025-11-29 03:44:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 03:44:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 03:44:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 03:44:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 03:44:33] 
[2025-11-29 03:44:33] 2025-11-29 02:43:42,382 | INFO     | ***************************************
[2025-11-29 03:44:33] 2025-11-29 02:43:42,885 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-29 03:44:33] 2025-11-29 02:43:43,131 | INFO     | sufficient remaining disk space (491925798912 B)
[2025-11-29 03:44:33] 2025-11-29 02:43:43,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 03:44:33] 2025-11-29 02:43:43,131 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 03:44:33] 2025-11-29 02:43:43,131 | INFO     | update_server=False
[2025-11-29 03:44:33] 2025-11-29 02:43:43,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 03:44:33] 2025-11-29 02:43:43,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 03:44:33] 2025-11-29 02:43:43,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 03:44:33] 2025-11-29 02:43:43,135 | INFO     | aborting loop
[2025-11-29 03:44:33] 2025-11-29 02:43:43,259 | INFO     | all payload control threads have been joined
[2025-11-29 03:44:33] 2025-11-29 02:43:44,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 03:44:33] 2025-11-29 02:43:44,091 | INFO     | all job control threads have been joined
[2025-11-29 03:44:33] 2025-11-29 02:43:44,131 | INFO     | all data control threads have been joined
[2025-11-29 03:44:33] 2025-11-29 02:43:44,137 | INFO     | [job] retrieve thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:44,141 | INFO     | [job] job monitor thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:44,195 | INFO     | [data] copytool_in thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:44,207 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:44,265 | INFO     | [payload] control thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:44,495 | INFO     | [job] validate thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:44,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:44,594 | INFO     | [payload] validate_post thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:44,649 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 03:44:33] 2025-11-29 02:43:44,879 | INFO     | [payload] failed_post thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:45,097 | INFO     | [job] control thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:45,136 | INFO     | [data] control thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:45,197 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:45,569 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:45,654 | INFO     | [job] queue monitor thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:46,055 | INFO     | [data] copytool_out thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:47,143 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 03:44:33] 2025-11-29 02:43:48,574 [wrapper] supervise_pilot (15 min periods counter: 96)
[2025-11-29 03:44:33] 2025-11-29 02:44:11,678 | INFO     | PID=26787 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 03:44:33] 2025-11-29 02:44:11,678 | INFO     | .. there are 9 such processes running
[2025-11-29 03:44:33] 2025-11-29 02:44:11,679 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 03:44:33] 2025-11-29 02:44:11,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 03:44:33] 2025-11-29 02:44:11,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 03:44:33] 2025-11-29 02:44:23,686 | INFO     | [monitor] cgroup control has ended
[2025-11-29 03:44:33] 2025-11-29 02:44:24,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374707271488)>', '<ExcThread(monitor, started 140374261610240)>']
[2025-11-29 03:44:33] 2025-11-29 02:44:24,754 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 03:44:33] 2025-11-29 02:44:24,754 | INFO     | [monitor] control thread has ended
[2025-11-29 03:44:33] 2025-11-29 02:44:29,719 | INFO     | all workflow threads have been joined
[2025-11-29 03:44:33] 2025-11-29 02:44:29,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 03:44:33] 2025-11-29 02:44:29,719 | INFO     | traces error code: 0
[2025-11-29 03:44:33] 2025-11-29 02:44:29,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 03:44:33] 2025-11-29 02:44:30,017 [wrapper] ==== pilot stdout END ====
[2025-11-29 03:44:33] 2025-11-29 02:44:30,101 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 03:44:33] 2025-11-29 02:44:30,174 [wrapper] pilotpid: 26787
[2025-11-29 03:44:33] 2025-11-29 02:44:30,253 [wrapper] Pilot exit status: 0
[2025-11-29 03:44:33] 2025-11-29 02:44:30,535 [wrapper] pandaids: 6896045904
[2025-11-29 03:44:33] 2025-11-29 02:44:31,105 [wrapper] cleanup supervisor_pilot 15550 26788
[2025-11-29 03:44:33] 2025-11-29 02:44:31,212 [wrapper] Test setup, not cleaning
[2025-11-29 03:44:33] 2025-11-29 02:44:31,324 [wrapper] apfmon messages muted
[2025-11-29 03:44:33] 2025-11-29 02:44:31,440 [wrapper] ==== wrapper stdout END ====
[2025-11-29 03:44:33] 2025-11-29 02:44:31,496 [wrapper] ==== wrapper stderr END ====
[2025-11-29 03:44:33]  *** Error codes and diagnostics ***
[2025-11-29 03:44:33]     "exeErrorCode": 0,
[2025-11-29 03:44:33]     "exeErrorDiag": "",
[2025-11-29 03:44:33]     "pilotErrorCode": 0,
[2025-11-29 03:44:33]     "pilotErrorDiag": "",
[2025-11-29 03:44:33]  *** Listing of results directory ***
[2025-11-29 03:44:33] total 1327596
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc    576529 Nov 24 19:01 pilot3.tar.gz
[2025-11-29 03:44:33] -rwx------. 1 boinc boinc     36292 Nov 24 19:56 runpilot2-wrapper.sh
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc      5112 Nov 24 19:56 queuedata.json
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc       100 Nov 28 03:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 03:44:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 03:53 run_atlas
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc       105 Nov 28 03:53 job.xml
[2025-11-29 03:44:33] -rw-r--r--. 2 boinc boinc 410042735 Nov 28 03:53 EVNT.47483658._003039.pool.root.1
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc      6391 Nov 28 03:53 init_data.xml
[2025-11-29 03:44:33] -rw-r--r--. 2 boinc boinc     15847 Nov 28 03:53 start_atlas.sh
[2025-11-29 03:44:33] drwxrwx--x. 2 boinc boinc        68 Nov 28 03:53 shared
[2025-11-29 03:44:33] -rw-r--r--. 2 boinc boinc    590099 Nov 28 03:53 input.tar.gz
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc         0 Nov 28 03:53 boinc_lockfile
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc      2785 Nov 28 03:54 pandaJob.out
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc    991842 Nov 28 03:57 agis_schedconf.cvmfs.json
[2025-11-29 03:44:33] drwx------. 5 boinc boinc      4096 Nov 28 03:57 pilot3
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc       533 Nov 29 03:14 boinc_task_state.xml
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc 917760394 Nov 29 03:40 HITS.47556173._000220.pool.root.1
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc      1031 Nov 29 03:41 memory_monitor_summary.json
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc   1516240 Nov 29 03:41 agis_ddmendpoints.agis.ALL.json
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc   2472112 Nov 29 03:41 log.47556173._000220.job.log.tgz.1
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc        95 Nov 29 03:43 pilot_heartbeat.json
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc      7951 Nov 29 03:43 heartbeat.json
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc        29 Nov 29 03:44 wrapper_checkpoint.txt
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc      8192 Nov 29 03:44 boinc_mmap_file
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc      4884 Nov 29 03:44 pilotlog.txt
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc  11400994 Nov 29 03:44 log.47556173._000220.job.log.1
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc       353 Nov 29 03:44 output.list
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc       620 Nov 29 03:44 runtime_log
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc  13895680 Nov 29 03:44 result.tar.gz
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc       662 Nov 29 03:44 vkCNDmmuqh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgrLKDms6fj3n.diag
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc      8817 Nov 29 03:44 runtime_log.err
[2025-11-29 03:44:33] -rw-r--r--. 1 boinc boinc     21476 Nov 29 03:44 stderr.txt
[2025-11-29 03:44:33] HITS file was successfully produced:
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc 917760394 Nov 29 03:40 shared/HITS.pool.root.1
[2025-11-29 03:44:33]  *** Contents of shared directory: ***
[2025-11-29 03:44:33] total 1310856
[2025-11-29 03:44:33] -rw-r--r--. 2 boinc boinc 410042735 Nov 28 03:53 ATLAS.root_0
[2025-11-29 03:44:33] -rw-r--r--. 2 boinc boinc     15847 Nov 28 03:53 start_atlas.sh
[2025-11-29 03:44:33] -rw-r--r--. 2 boinc boinc    590099 Nov 28 03:53 input.tar.gz
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc 917760394 Nov 29 03:40 HITS.pool.root.1
[2025-11-29 03:44:33] -rw-------. 1 boinc boinc  13895680 Nov 29 03:44 result.tar.gz
03:44:35 (22979): run_atlas exited; CPU time 317595.208107
03:44:35 (22979): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN