Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:57:38 (2799412): wrapper (7.7.26015): starting
18:57:38 (2799412): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 18:57:38] Arguments: --nthreads 9
[2025-11-25 18:57:38] Threads: 9
[2025-11-25 18:57:38] Checking for CVMFS
[2025-11-25 18:57:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:57:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:57:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:57:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:57:39] 2.13.3.0 9158 29254 303884 153302 2 390 26221898 32935937 25477 16776704 0 169448987 99.785 95856683 33820 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 18:57:39] CVMFS is ok
[2025-11-25 18:57:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:57:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:57:39] Further information can be found at the LHC@home message board.
[2025-11-25 18:57:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:57:39] Checking for apptainer binary...
[2025-11-25 18:57:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:57:39] Running /usr/bin/apptainer --version
[2025-11-25 18:57:39] apptainer version 1.4.4-1.el9
[2025-11-25 18:57:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:57:39] c-8-16.aglt2.org
[2025-11-25 18:57:39] apptainer works
[2025-11-25 18:57:39] Set ATHENA_PROC_NUMBER=9
[2025-11-25 18:57:39] Set ATHENA_CORE_NUMBER=9
[2025-11-25 18:57:39] Starting ATLAS job with PandaID=6896044924
[2025-11-25 18:57:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:57:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:57:23] 2025-11-26 19:10:22,382 | INFO     | monitor loop #4044: job 0:6896044924 is in state 'finished'
[2025-11-26 14:57:23] 2025-11-26 19:10:22,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:57:23] 2025-11-26 19:10:22,421 | INFO     | time since job start (69136s) is within the limit (172800.0s)
[2025-11-26 14:57:23] 2025-11-26 19:10:24,436 | INFO     | time since job start (69138s) is within the limit (172800.0s)
[2025-11-26 14:57:23] 2025-11-26 19:10:24,901 | INFO     | monitor loop #4045: job 0:6896044924 is in state 'finished'
[2025-11-26 14:57:23] 2025-11-26 19:10:24,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:57:23] 2025-11-26 19:10:26,451 | INFO     | time since job start (69140s) is within the limit (172800.0s)
[2025-11-26 14:57:23] 2025-11-26 19:10:27,406 | INFO     | monitor loop #4046: job 0:6896044924 is in state 'finished'
[2025-11-26 14:57:23] 2025-11-26 19:10:27,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:57:23] 2025-11-26 19:10:28,458 | INFO     | time since job start (69142s) is within the limit (172800.0s)
[2025-11-26 14:57:23] 2025-11-26 19:10:29,913 | INFO     | monitor loop #4047: job 0:6896044924 is in state 'finished'
[2025-11-26 14:57:23] 2025-11-26 19:10:29,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:57:23] 2025-11-26 19:10:30,477 | INFO     | time since job start (69144s) is within the limit (172800.0s)
[2025-11-26 14:57:23] 2025-11-26 19:10:32,421 | INFO     | monitor loop #4048: job 0:6896044924 is in state 'finished'
[2025-11-26 14:57:23] 2025-11-26 19:10:32,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:57:23] 2025-11-26 19:10:32,514 | INFO     | time since job start (69146s) is within the limit (172800.0s)
[2025-11-26 14:57:23] 2025-11-26 19:10:34,297 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:57:23] 2025-11-26 19:10:34,304 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1432499999996
[2025-11-26 14:57:23] 2025-11-26 19:10:34,362 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896044924/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:57:23] 2025-11-26 19:10:34,363 | INFO     | extracted standard info from prmon json
[2025-11-26 14:57:23] 2025-11-26 19:10:34,363 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:57:23] 2025-11-26 19:10:34,363 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:57:23] 2025-11-26 19:10:34,521 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:57:23] 2025-11-26 19:10:34,604 | INFO     | sum of square deviations: 449842276734.69617
[2025-11-26 14:57:23] 2025-11-26 19:10:34,620 | INFO     | time since job start (69148s) is within the limit (172800.0s)
[2025-11-26 14:57:23] 2025-11-26 19:10:34,680 | INFO     | sum of deviations: 1588973528100.1365
[2025-11-26 14:57:23] 2025-11-26 19:10:34,680 | INFO     | mean x: 1764149639.5954063
[2025-11-26 14:57:23] 2025-11-26 19:10:34,680 | INFO     | mean y: 3116072.026501767
[2025-11-26 14:57:23] 2025-11-26 19:10:34,680 | INFO     | intersect: -6228372656.138847
[2025-11-26 14:57:23] 2025-11-26 19:10:34,686 | INFO     | chi2: 17.586841801982537
[2025-11-26 14:57:23] 2025-11-26 19:10:34,688 | INFO     | sum of square deviations: 443909272920.0062
[2025-11-26 14:57:23] 2025-11-26 19:10:34,750 | INFO     | sum of deviations: 2005534989693.6704
[2025-11-26 14:57:23] 2025-11-26 19:10:34,750 | INFO     | mean x: 1764149487.1073647
[2025-11-26 14:57:23] 2025-11-26 19:10:34,750 | INFO     | mean y: 3126776.0275066546
[2025-11-26 14:57:23] 2025-11-26 19:10:34,751 | INFO     | intersect: -7967113404.293151
[2025-11-26 14:57:23] 2025-11-26 19:10:34,756 | INFO     | chi2: 14.15959613994376
[2025-11-26 14:57:23] 2025-11-26 19:10:34,756 | INFO     | current chi2=14.15959613994376 (change=19.48755609806207 %)
[2025-11-26 14:57:23] 2025-11-26 19:10:34,757 | INFO     | right removable region: 1126
[2025-11-26 14:57:23] 2025-11-26 19:10:34,758 | INFO     | sum of square deviations: 443907273451.57587
[2025-11-26 14:57:23] 2025-11-26 19:10:34,822 | INFO     | sum of deviations: 1191485505562.936
[2025-11-26 14:57:23] 2025-11-26 19:10:34,823 | INFO     | mean x: 1764149792.1091392
[2025-11-26 14:57:23] 2025-11-26 19:10:34,823 | INFO     | mean y: 3126280.870452529
[2025-11-26 14:57:23] 2025-11-26 19:10:34,823 | INFO     | intersect: -4732004303.037857
[2025-11-26 14:57:23] 2025-11-26 19:10:34,829 | INFO     | chi2: 14.90716069245854
[2025-11-26 14:57:23] 2025-11-26 19:10:34,829 | INFO     | current chi2=14.90716069245854 (change=15.236852299552279 %)
[2025-11-26 14:57:23] 2025-11-26 19:10:34,829 | INFO     | left removable region: 10
[2025-11-26 14:57:23] 2025-11-26 19:10:34,831 | INFO     | sum of square deviations: 431037363098.1606
[2025-11-26 14:57:23] 2025-11-26 19:10:34,898 | INFO     | sum of deviations: 1584868554268.6924
[2025-11-26 14:57:23] 2025-11-26 19:10:34,898 | INFO     | mean x: 1764149761.6299284
[2025-11-26 14:57:23] 2025-11-26 19:10:34,899 | INFO     | mean y: 3141690.033154122
[2025-11-26 14:57:23] 2025-11-26 19:10:34,899 | INFO     | intersect: -6483408483.092231
[2025-11-26 14:57:23] 2025-11-26 19:10:34,904 | INFO     | chi2: 10.786490408772169
[2025-11-26 14:57:23] 2025-11-26 19:10:34,905 | INFO     | current memory leak: 3.68 B/s (using 1116 data points, chi2=10.79)
[2025-11-26 14:57:23] 2025-11-26 19:10:34,906 | INFO     | could have reported an average CPU frequency of 2600 MHz (41 samples)
[2025-11-26 14:57:23] 2025-11-26 19:10:34,906 | INFO     | ..............................
[2025-11-26 14:57:23] 2025-11-26 19:10:34,906 | INFO     | . Timing measurements:
[2025-11-26 14:57:23] 2025-11-26 19:10:34,906 | INFO     | . get job = 0 s
[2025-11-26 14:57:23] 2025-11-26 19:10:34,906 | INFO     | . initial setup = 4 s
[2025-11-26 14:57:23] 2025-11-26 19:10:34,907 | INFO     | . payload setup = 16 s
[2025-11-26 14:57:23] 2025-11-26 19:10:34,907 | INFO     | . stage-in = 0 s
[2025-11-26 14:57:23] 2025-11-26 19:10:34,907 | INFO     | . payload execution = 69048 s
[2025-11-26 14:57:23] 2025-11-26 19:10:34,907 | INFO     | . stage-out = 7 s
[2025-11-26 14:57:23] 2025-11-26 19:10:34,907 | INFO     | . log creation = 2 s
[2025-11-26 14:57:23] 2025-11-26 19:10:34,907 | INFO     | ..............................
[2025-11-26 14:57:23] 2025-11-26 19:10:35,160 | INFO     | 
[2025-11-26 14:57:23] 2025-11-26 19:10:35,161 | INFO     | job summary report
[2025-11-26 14:57:23] 2025-11-26 19:10:35,161 | INFO     | --------------------------------------------------
[2025-11-26 14:57:23] 2025-11-26 19:10:35,164 | INFO     | PanDA job id: 6896044924
[2025-11-26 14:57:23] 2025-11-26 19:10:35,164 | INFO     | task id: 47556173
[2025-11-26 14:57:23] 2025-11-26 19:10:35,164 | INFO     | errors: (none)
[2025-11-26 14:57:23] 2025-11-26 19:10:35,164 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | pilot state: finished 
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | transexitcode: 0
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | exeerrorcode: 0
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | exeerrordiag: 
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | exitcode: 0
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | exitmsg: OK
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | cpuconsumptiontime: 297331 s
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | nevents: 1000
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | neventsw: 0
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | pid: 2810603
[2025-11-26 14:57:23] 2025-11-26 19:10:35,165 | INFO     | pgrp: 2810603
[2025-11-26 14:57:23] 2025-11-26 19:10:35,166 | INFO     | corecount: 9
[2025-11-26 14:57:23] 2025-11-26 19:10:35,166 | INFO     | event service: False
[2025-11-26 14:57:23] 2025-11-26 19:10:35,166 | INFO     | sizes: {0: 2284085, 1: 2284340, 2: 2284340, 11: 2284630, 12: 2284658, 69069: 2340977, 69078: 2349971, 69081: 2350027, 69124: 2350369}
[2025-11-26 14:57:23] 2025-11-26 19:10:35,166 | INFO     | --------------------------------------------------
[2025-11-26 14:57:23] 2025-11-26 19:10:35,166 | INFO     | 
[2025-11-26 14:57:23] 2025-11-26 19:10:35,166 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 14:57:23] 2025-11-26 19:10:35,564 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,565 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:57:23] 2025-11-26 19:10:35,566 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,567 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:57:23] 2025-11-26 19:10:35,567 | INFO     | job 6896044924 has completed (purged errors)
[2025-11-26 14:57:23] 2025-11-26 19:10:35,567 | INFO     | overall cleanup function is called
[2025-11-26 14:57:23] 2025-11-26 19:10:36,586 | INFO     | --- collectZombieJob: --- 10, [2810603]
[2025-11-26 14:57:23] 2025-11-26 19:10:36,586 | INFO     | zombie collector waiting for pid 2810603
[2025-11-26 14:57:23] 2025-11-26 19:10:36,590 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:57:23] 2025-11-26 19:10:36,590 | INFO     | collected zombie processes
[2025-11-26 14:57:23] 2025-11-26 19:10:36,590 | INFO     | will attempt to kill all subprocesses of pid=2810603
[2025-11-26 14:57:23] 2025-11-26 19:10:37,779 | INFO     | process IDs to be killed: [2810603] (in reverse order)
[2025-11-26 14:57:23] 2025-11-26 19:10:38,096 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:57:23] 2025-11-26 19:10:38,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:57:23] 2025-11-26 19:10:38,153 | INFO     | did not find any defunct processes belonging to 2810603
[2025-11-26 14:57:23] 2025-11-26 19:10:38,262 | INFO     | did not find any defunct processes belonging to 2810603
[2025-11-26 14:57:23] 2025-11-26 19:10:38,272 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:57:23] 2025-11-26 19:10:38,272 | INFO     | ready for new job
[2025-11-26 14:57:23] 2025-11-26 19:10:38,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:57:23] 2025-11-26 19:10:38,281 | INFO     | ***************************************
[2025-11-26 14:57:23] 2025-11-26 19:10:38,281 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:57:23] 2025-11-26 19:10:38,281 | INFO     | ***************************************
[2025-11-26 14:57:23] 2025-11-26 19:10:38,282 | INFO     | 
[2025-11-26 14:57:23] 2025-11-26 19:10:38,283 | INFO     | architecture information:
[2025-11-26 14:57:23] 2025-11-26 19:10:38,290 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:57:23] 2025-11-26 19:10:38,505 | INFO     | cat /etc/os-release:
[2025-11-26 14:57:23] NAME="CentOS Linux"
[2025-11-26 14:57:23] VERSION="7 (Core)"
[2025-11-26 14:57:23] ID="centos"
[2025-11-26 14:57:23] ID_LIKE="rhel fedora"
[2025-11-26 14:57:23] VERSION_ID="7"
[2025-11-26 14:57:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:57:23] ANSI_COLOR="0;31"
[2025-11-26 14:57:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:57:23] HOME_URL="https://www.centos.org/"
[2025-11-26 14:57:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:57:23] 
[2025-11-26 14:57:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:57:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:57:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:57:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:57:23] 
[2025-11-26 14:57:23] 2025-11-26 19:10:38,505 | INFO     | ***************************************
[2025-11-26 14:57:23] 2025-11-26 19:10:39,011 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 14:57:23] 2025-11-26 19:10:39,076 | INFO     | sufficient remaining disk space (69891784704 B)
[2025-11-26 14:57:23] 2025-11-26 19:10:39,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:57:23] 2025-11-26 19:10:39,077 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:57:23] 2025-11-26 19:10:39,077 | INFO     | update_server=False
[2025-11-26 14:57:23] 2025-11-26 19:10:39,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:57:23] 2025-11-26 19:10:39,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:57:23] 2025-11-26 19:10:39,078 | INFO     | aborting loop
[2025-11-26 14:57:23] 2025-11-26 19:10:39,112 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:57:23] 2025-11-26 19:10:39,525 | INFO     | all data control threads have been joined
[2025-11-26 14:57:23] 2025-11-26 19:10:39,821 | INFO     | all job control threads have been joined
[2025-11-26 14:57:23] 2025-11-26 19:10:40,083 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,083 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,182 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:57:23] 2025-11-26 19:10:40,202 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:57:23] 2025-11-26 19:10:40,242 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,417 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,452 | INFO     | [job] validate thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,476 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,496 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,531 | INFO     | [data] control thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,593 | INFO     | all payload control threads have been joined
[2025-11-26 14:57:23] 2025-11-26 19:10:40,610 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:40,828 | INFO     | [job] control thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:41,188 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:41,471 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:41,600 | INFO     | [payload] control thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:42,231 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:10:43,128 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:57:23] 2025-11-26 19:11:08,543 | INFO     | PID=2803678 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:57:23] 2025-11-26 19:11:08,543 | INFO     | .. there are 45 such processes running
[2025-11-26 14:57:23] 2025-11-26 19:11:08,544 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:57:23] 2025-11-26 19:11:08,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:57:23] 2025-11-26 19:11:08,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:57:23] 2025-11-26 19:11:12,987 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:57:23] 2025-11-26 19:11:15,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139806149089088)>', '<ExcThread(monitor, started 139805648205568)>']
[2025-11-26 14:57:23] 2025-11-26 19:11:15,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:57:23] 2025-11-26 19:11:15,609 | INFO     | [monitor] control thread has ended
[2025-11-26 14:57:23] 2025-11-26 19:11:20,158 | INFO     | all workflow threads have been joined
[2025-11-26 14:57:23] 2025-11-26 19:11:20,158 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:57:23] 2025-11-26 19:11:20,158 | INFO     | traces error code: 0
[2025-11-26 14:57:23] 2025-11-26 19:11:20,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:57:23] 2025-11-26 19:11:20,721 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:57:23] 2025-11-26 19:11:20,760 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:57:23] 2025-11-26 19:11:20,784 [wrapper] pilotpid: 2803678
[2025-11-26 14:57:23] 2025-11-26 19:11:20,800 [wrapper] Pilot exit status: 0
[2025-11-26 14:57:23] 2025-11-26 19:11:20,941 [wrapper] pandaids: 6896044924
[2025-11-26 14:57:23] 2025-11-26 19:11:21,162 [wrapper] cleanup supervisor_pilot 2813402 2803679
[2025-11-26 14:57:23] 2025-11-26 19:11:21,177 [wrapper] Test setup, not cleaning
[2025-11-26 14:57:23] 2025-11-26 19:11:21,190 [wrapper] apfmon messages muted
[2025-11-26 14:57:23] 2025-11-26 19:11:21,203 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:57:23] 2025-11-26 19:11:21,225 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:57:23]  *** Error codes and diagnostics ***
[2025-11-26 14:57:23]     "exeErrorCode": 0,
[2025-11-26 14:57:23]     "exeErrorDiag": "",
[2025-11-26 14:57:23]     "pilotErrorCode": 0,
[2025-11-26 14:57:23]     "pilotErrorDiag": "",
[2025-11-26 14:57:23]  *** Listing of results directory ***
[2025-11-26 14:57:23] total 1325420
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-26 14:57:23] -rwx------. 1 boincer umatlas     36292 Nov 24 13:38 runpilot2-wrapper.sh
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:38 queuedata.json
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:57:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:57 run_atlas
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:57 job.xml
[2025-11-26 14:57:23] -rw-r--r--. 2 boincer umatlas 408188450 Nov 25 18:57 EVNT.47483658._003029.pool.root.1
[2025-11-26 14:57:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:57 shared
[2025-11-26 14:57:23] -rw-r--r--. 2 boincer umatlas    611268 Nov 25 18:57 input.tar.gz
[2025-11-26 14:57:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:57 start_atlas.sh
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:57 boinc_lockfile
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 18:57 pandaJob.out
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas        57 Nov 25 18:57 setup.sh.local
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas    991877 Nov 25 18:58 agis_schedconf.cvmfs.json
[2025-11-26 14:57:23] drwx------. 7 boincer umatlas      4096 Nov 25 18:58 pilot3
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas       533 Nov 26 13:41 boinc_task_state.xml
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas 923243369 Nov 26 14:08 HITS.47556173._000114.pool.root.1
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas      1070 Nov 26 14:09 memory_monitor_summary.json
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:09 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas   2337877 Nov 26 14:09 log.47556173._000114.job.log.tgz.1
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas      8649 Nov 26 14:10 heartbeat.json
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas        95 Nov 26 14:11 pilot_heartbeat.json
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas      4824 Nov 26 14:11 pilotlog.txt
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas   8577423 Nov 26 14:11 log.47556173._000114.job.log.1
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas       353 Nov 26 14:11 output.list
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:11 runtime_log
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas  10936320 Nov 26 14:11 result.tar.gz
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas       663 Nov 26 14:11 uKnNDmPdqh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMqLKDmZRMBOm.diag
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 14:11 runtime_log.err
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas      6661 Nov 26 14:57 init_data.xml
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:57 boinc_mmap_file
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:57 wrapper_checkpoint.txt
[2025-11-26 14:57:23] -rw-r--r--. 1 boincer umatlas     21785 Nov 26 14:57 stderr.txt
[2025-11-26 14:57:23] HITS file was successfully produced:
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas 923243369 Nov 26 14:08 shared/HITS.pool.root.1
[2025-11-26 14:57:23]  *** Contents of shared directory: ***
[2025-11-26 14:57:23] total 1311532
[2025-11-26 14:57:23] -rw-r--r--. 2 boincer umatlas 408188450 Nov 25 18:57 ATLAS.root_0
[2025-11-26 14:57:23] -rw-r--r--. 2 boincer umatlas    611268 Nov 25 18:57 input.tar.gz
[2025-11-26 14:57:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:57 start_atlas.sh
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas 923243369 Nov 26 14:08 HITS.pool.root.1
[2025-11-26 14:57:23] -rw-------. 1 boincer umatlas  10936320 Nov 26 14:11 result.tar.gz
14:57:25 (2799412): run_atlas exited; CPU time 299786.557571
14:57:25 (2799412): called boinc_finish(0)

</stderr_txt>
]]>

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