Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:56:07 (1253800): wrapper (7.7.26015): starting
12:56:07 (1253800): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:56:07] Arguments: --nthreads 8
[2025-11-25 12:56:07] Threads: 8
[2025-11-25 12:56:07] Checking for CVMFS
[2025-11-25 12:56:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:56:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:56:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:56:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:56:08] 2.13.2.0 6969 35600 230012 153292 3 64 38903295 40960000 26155 16776704 0 100673292 99.621 90053093 35889 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 12:56:08] CVMFS is ok
[2025-11-25 12:56:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:56:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:56:08] Further information can be found at the LHC@home message board.
[2025-11-25 12:56:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:56:08] Checking for apptainer binary...
[2025-11-25 12:56:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:56:08] Running /usr/bin/apptainer --version
[2025-11-25 12:56:08] apptainer version 1.4.4-1.el9
[2025-11-25 12:56:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:56:08] c-212-14.aglt2.org
[2025-11-25 12:56:08] apptainer works
[2025-11-25 12:56:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:56:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:56:08] Starting ATLAS job with PandaID=6894238240
[2025-11-25 12:56:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:44:24]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:44:24] 2025-11-26 00:43:25,714 | INFO     | monitor loop #1604: job 0:6894238240 is in state 'finished'
[2025-11-25 19:44:24] 2025-11-26 00:43:25,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:44:24] 2025-11-26 00:43:25,812 | INFO     | PID=1257482 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 19:44:24] 2025-11-26 00:43:25,812 | INFO     | .. there are 26 such processes running
[2025-11-25 19:44:24] 2025-11-26 00:43:26,812 | INFO     | time since job start (24411s) is within the limit (172800.0s)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,217 | INFO     | monitor loop #1605: job 0:6894238240 is in state 'finished'
[2025-11-25 19:44:24] 2025-11-26 00:43:28,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,309 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 19:44:24] 2025-11-26 00:43:28,314 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3120.96565625
[2025-11-25 19:44:24] 2025-11-26 00:43:28,330 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894238240/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,331 | INFO     | extracted standard info from prmon json
[2025-11-25 19:44:24] 2025-11-26 00:43:28,331 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:44:24] 2025-11-26 00:43:28,331 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:44:24] 2025-11-26 00:43:28,331 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 19:44:24] 2025-11-26 00:43:28,331 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 19:44:24] 2025-11-26 00:43:28,337 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:44:24] 2025-11-26 00:43:28,338 | INFO     | sum of square deviations: 19696671382.696472
[2025-11-25 19:44:24] 2025-11-26 00:43:28,342 | INFO     | sum of deviations: 126019264243.66908
[2025-11-25 19:44:24] 2025-11-26 00:43:28,342 | INFO     | mean x: 1764105596.0275688
[2025-11-25 19:44:24] 2025-11-26 00:43:28,342 | INFO     | mean y: 2569493.030075188
[2025-11-25 19:44:24] 2025-11-26 00:43:28,342 | INFO     | intersect: -11284174593.832947
[2025-11-25 19:44:24] 2025-11-26 00:43:28,342 | INFO     | chi2: 2.235090216410101
[2025-11-25 19:44:24] 2025-11-26 00:43:28,343 | INFO     | sum of square deviations: 18965433120.1928
[2025-11-25 19:44:24] 2025-11-26 00:43:28,347 | INFO     | sum of deviations: 125228020083.4161
[2025-11-25 19:44:24] 2025-11-26 00:43:28,347 | INFO     | mean x: 1764105443.5279188
[2025-11-25 19:44:24] 2025-11-26 00:43:28,347 | INFO     | mean y: 2569328.007614213
[2025-11-25 19:44:24] 2025-11-26 00:43:28,347 | INFO     | intersect: -11645750565.945438
[2025-11-25 19:44:24] 2025-11-26 00:43:28,348 | INFO     | chi2: 2.234605775420143
[2025-11-25 19:44:24] 2025-11-26 00:43:28,348 | INFO     | current chi2=2.234605775420143 (change=0.02167433718787968 %)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,348 | INFO     | right removable region: 393
[2025-11-25 19:44:24] 2025-11-26 00:43:28,348 | INFO     | sum of square deviations: 18965426410.1928
[2025-11-25 19:44:24] 2025-11-26 00:43:28,352 | INFO     | sum of deviations: 35020379243.4264
[2025-11-25 19:44:24] 2025-11-26 00:43:28,352 | INFO     | mean x: 1764105748.5279188
[2025-11-25 19:44:24] 2025-11-26 00:43:28,352 | INFO     | mean y: 2588405.8248730963
[2025-11-25 19:44:24] 2025-11-26 00:43:28,352 | INFO     | intersect: -3254899773.0727763
[2025-11-25 19:44:24] 2025-11-26 00:43:28,353 | INFO     | chi2: 0.10675595915178869
[2025-11-25 19:44:24] 2025-11-26 00:43:28,353 | INFO     | current chi2=0.10675595915178869 (change=95.2236398169531 %)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,353 | INFO     | sum of square deviations: 18252507362.688877
[2025-11-25 19:44:24] 2025-11-26 00:43:28,357 | INFO     | sum of deviations: 32167122752.647816
[2025-11-25 19:44:24] 2025-11-26 00:43:28,357 | INFO     | mean x: 1764105901.0282776
[2025-11-25 19:44:24] 2025-11-26 00:43:28,357 | INFO     | mean y: 2589010.6683804626
[2025-11-25 19:44:24] 2025-11-26 00:43:28,357 | INFO     | intersect: -3106365279.252661
[2025-11-25 19:44:24] 2025-11-26 00:43:28,358 | INFO     | chi2: 0.10085233129237017
[2025-11-25 19:44:24] 2025-11-26 00:43:28,358 | INFO     | current chi2=0.10085233129237017 (change=5.530021842644465 %)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,358 | INFO     | left removable region: 20
[2025-11-25 19:44:24] 2025-11-26 00:43:28,358 | INFO     | sum of square deviations: 16091615790.675543
[2025-11-25 19:44:24] 2025-11-26 00:43:28,362 | INFO     | sum of deviations: 45850137643.63803
[2025-11-25 19:44:24] 2025-11-26 00:43:28,362 | INFO     | mean x: 1764106023.0294907
[2025-11-25 19:44:24] 2025-11-26 00:43:28,362 | INFO     | mean y: 2586085.305630027
[2025-11-25 19:44:24] 2025-11-26 00:43:28,362 | INFO     | intersect: -5023913740.817637
[2025-11-25 19:44:24] 2025-11-26 00:43:28,363 | INFO     | chi2: 0.01978428796325144
[2025-11-25 19:44:24] 2025-11-26 00:43:28,363 | INFO     | current memory leak: 2.85 B/s (using 373 data points, chi2=0.02)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | could have reported an average CPU frequency of 3127 MHz (17 samples)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | ..............................
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | . Timing measurements:
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | . get job = 0 s
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | . initial setup = 3 s
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | . payload setup = 18 s
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | . stage-in = 0 s
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | . payload execution = 24345 s
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | . stage-out = 2 s
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | . log creation = 0 s
[2025-11-25 19:44:24] 2025-11-26 00:43:28,364 | INFO     | ..............................
[2025-11-25 19:44:24] 2025-11-26 00:43:28,719 | INFO     | 
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | job summary report
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | --------------------------------------------------
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | PanDA job id: 6894238240
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | task id: 47523675
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | errors: (none)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | pilot state: finished 
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | transexitcode: 0
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | exeerrorcode: 0
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | exeerrordiag: 
[2025-11-25 19:44:24] 2025-11-26 00:43:28,721 | INFO     | exitcode: 0
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | exitmsg: OK
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | cpuconsumptiontime: 107622 s
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | nevents: 400
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | neventsw: 0
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | pid: 1264251
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | pgrp: 1264251
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | corecount: 8
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | event service: False
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | sizes: {0: 2283070, 1: 2283926, 12: 2284216, 23: 2284216, 24367: 2319613, 24370: 2328611, 24371: 2328795, 24380: 2329053}
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | --------------------------------------------------
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | 
[2025-11-25 19:44:24] 2025-11-26 00:43:28,722 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | job 6894238240 has completed (purged errors)
[2025-11-25 19:44:24] 2025-11-26 00:43:28,780 | INFO     | overall cleanup function is called
[2025-11-25 19:44:24] 2025-11-26 00:43:29,787 | INFO     | --- collectZombieJob: --- 10, [1264251]
[2025-11-25 19:44:24] 2025-11-26 00:43:29,788 | INFO     | zombie collector waiting for pid 1264251
[2025-11-25 19:44:24] 2025-11-26 00:43:29,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:44:24] 2025-11-26 00:43:29,788 | INFO     | collected zombie processes
[2025-11-25 19:44:24] 2025-11-26 00:43:29,788 | INFO     | will attempt to kill all subprocesses of pid=1264251
[2025-11-25 19:44:24] 2025-11-26 00:43:30,220 | INFO     | process IDs to be killed: [1264251] (in reverse order)
[2025-11-25 19:44:24] 2025-11-26 00:43:30,361 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:44:24] 2025-11-26 00:43:30,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:44:24] 2025-11-26 00:43:30,377 | INFO     | did not find any defunct processes belonging to 1264251
[2025-11-25 19:44:24] 2025-11-26 00:43:30,392 | INFO     | did not find any defunct processes belonging to 1264251
[2025-11-25 19:44:24] 2025-11-26 00:43:30,393 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:44:24] 2025-11-26 00:43:30,394 | INFO     | ready for new job
[2025-11-25 19:44:24] 2025-11-26 00:43:30,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:44:24] 2025-11-26 00:43:30,396 | INFO     | ***************************************
[2025-11-25 19:44:24] 2025-11-26 00:43:30,396 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:44:24] 2025-11-26 00:43:30,396 | INFO     | ***************************************
[2025-11-25 19:44:24] 2025-11-26 00:43:30,396 | INFO     | 
[2025-11-25 19:44:24] 2025-11-26 00:43:30,402 | INFO     | architecture information:
[2025-11-25 19:44:24] 2025-11-26 00:43:30,403 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:44:24] 2025-11-26 00:43:30,420 | INFO     | cat /etc/os-release:
[2025-11-25 19:44:24] NAME="CentOS Linux"
[2025-11-25 19:44:24] VERSION="7 (Core)"
[2025-11-25 19:44:24] ID="centos"
[2025-11-25 19:44:24] ID_LIKE="rhel fedora"
[2025-11-25 19:44:24] VERSION_ID="7"
[2025-11-25 19:44:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:44:24] ANSI_COLOR="0;31"
[2025-11-25 19:44:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:44:24] HOME_URL="https://www.centos.org/"
[2025-11-25 19:44:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:44:24] 
[2025-11-25 19:44:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:44:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:44:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:44:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:44:24] 
[2025-11-25 19:44:24] 2025-11-26 00:43:30,421 | INFO     | ***************************************
[2025-11-25 19:44:24] 2025-11-26 00:43:30,924 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 19:44:24] 2025-11-26 00:43:30,960 | INFO     | sufficient remaining disk space (120077680640 B)
[2025-11-25 19:44:24] 2025-11-26 00:43:30,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:44:24] 2025-11-26 00:43:30,961 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:44:24] 2025-11-26 00:43:30,961 | INFO     | update_server=False
[2025-11-25 19:44:24] 2025-11-26 00:43:30,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:44:24] 2025-11-26 00:43:30,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:44:24] 2025-11-26 00:43:31,155 | INFO     | all data control threads have been joined
[2025-11-25 19:44:24] 2025-11-26 00:43:31,201 | INFO     | all payload control threads have been joined
[2025-11-25 19:44:24] 2025-11-26 00:43:31,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:44:24] 2025-11-26 00:43:31,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:44:24] 2025-11-26 00:43:31,751 | INFO     | aborting loop
[2025-11-25 19:44:24] 2025-11-26 00:43:31,966 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,162 | INFO     | [data] control thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,207 | INFO     | [payload] control thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,215 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,267 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,388 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,408 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,525 | INFO     | all job control threads have been joined
[2025-11-25 19:44:24] 2025-11-26 00:43:32,722 | INFO     | [job] validate thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,752 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:32,992 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:33,385 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:33,410 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:33,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:44:24] 2025-11-26 00:43:33,534 | INFO     | [job] control thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:34,474 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:34,978 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:43:41,580 | INFO     | job.realtimelogging is not enabled
[2025-11-25 19:44:24] 2025-11-26 00:43:42,586 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:44:24] 2025-11-26 00:44:00,424 | INFO     | PID=1257482 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:44:24] 2025-11-26 00:44:00,424 | INFO     | .. there are 26 such processes running
[2025-11-25 19:44:24] 2025-11-26 00:44:00,427 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:44:24] 2025-11-26 00:44:00,427 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:44:24] 2025-11-26 00:44:00,427 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:44:24] 2025-11-26 00:44:17,436 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:44:24] 2025-11-26 00:44:18,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140083177252672)>', '<ExcThread(monitor, started 140082665203456)>']
[2025-11-25 19:44:24] 2025-11-26 00:44:19,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:44:24] 2025-11-26 00:44:19,554 | INFO     | [monitor] control thread has ended
[2025-11-25 19:44:24] 2025-11-26 00:44:23,852 | INFO     | all workflow threads have been joined
[2025-11-25 19:44:24] 2025-11-26 00:44:23,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:44:24] 2025-11-26 00:44:23,854 | INFO     | traces error code: 0
[2025-11-25 19:44:24] 2025-11-26 00:44:23,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:44:24] 2025-11-26 00:44:24,034 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:44:24] 2025-11-26 00:44:24,038 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:44:24] 2025-11-26 00:44:24,042 [wrapper] pilotpid: 1257482
[2025-11-25 19:44:24] 2025-11-26 00:44:24,045 [wrapper] Pilot exit status: 0
[2025-11-25 19:44:24] 2025-11-26 00:44:24,069 [wrapper] pandaids: 6894238240
[2025-11-25 19:44:24] 2025-11-26 00:44:24,200 [wrapper] cleanup supervisor_pilot 2529185 1257483
[2025-11-25 19:44:24] 2025-11-26 00:44:24,208 [wrapper] Test setup, not cleaning
[2025-11-25 19:44:24] 2025-11-26 00:44:24,211 [wrapper] apfmon messages muted
[2025-11-25 19:44:24] 2025-11-26 00:44:24,214 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:44:24] 2025-11-26 00:44:24,222 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:44:24]  *** Error codes and diagnostics ***
[2025-11-25 19:44:24]     "exeErrorCode": 0,
[2025-11-25 19:44:24]     "exeErrorDiag": "",
[2025-11-25 19:44:24]     "pilotErrorCode": 0,
[2025-11-25 19:44:24]     "pilotErrorDiag": "",
[2025-11-25 19:44:24]  *** Listing of results directory ***
[2025-11-25 19:44:24] total 628508
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:31 queuedata.json
[2025-11-25 19:44:24] -rwx------. 1 boincer umatlas     36292 Nov 24 13:34 runpilot2-wrapper.sh
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas       100 Nov 25 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:44:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 12:56 run_atlas
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas       105 Nov 25 12:56 job.xml
[2025-11-25 19:44:24] -rw-r--r--. 2 boincer umatlas 287673146 Nov 25 12:56 EVNT.47523673._000001.pool.root.1
[2025-11-25 19:44:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:56 start_atlas.sh
[2025-11-25 19:44:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 12:56 shared
[2025-11-25 19:44:24] -rw-r--r--. 2 boincer umatlas    589940 Nov 25 12:56 input.tar.gz
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas         0 Nov 25 12:56 boinc_lockfile
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas      2612 Nov 25 12:56 pandaJob.out
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas        57 Nov 25 12:56 setup.sh.local
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas    991543 Nov 25 12:56 agis_schedconf.cvmfs.json
[2025-11-25 19:44:24] drwx------. 5 boincer umatlas      4096 Nov 25 12:56 pilot3
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas      6950 Nov 25 19:37 init_data.xml
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas 344354848 Nov 25 19:42 HITS.47523675._000020.pool.root.1
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas       531 Nov 25 19:42 boinc_task_state.xml
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas      1050 Nov 25 19:43 memory_monitor_summary.json
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas   1516240 Nov 25 19:43 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas    609086 Nov 25 19:43 log.47523675._000020.job.log.tgz.1
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas      7793 Nov 25 19:43 heartbeat.json
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas        95 Nov 25 19:44 pilot_heartbeat.json
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 19:44 boinc_mmap_file
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas        29 Nov 25 19:44 wrapper_checkpoint.txt
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas      4897 Nov 25 19:44 pilotlog.txt
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas   3213459 Nov 25 19:44 log.47523675._000020.job.log.1
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas       357 Nov 25 19:44 output.list
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas       620 Nov 25 19:44 runtime_log
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas   3840000 Nov 25 19:44 result.tar.gz
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas       665 Nov 25 19:44 WBNMDmxZqh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmg9IKDmD1lyln.diag
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 19:44 runtime_log.err
[2025-11-25 19:44:24] -rw-r--r--. 1 boincer umatlas     21553 Nov 25 19:44 stderr.txt
[2025-11-25 19:44:24] HITS file was successfully produced:
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas 344354848 Nov 25 19:42 shared/HITS.pool.root.1
[2025-11-25 19:44:24]  *** Contents of shared directory: ***
[2025-11-25 19:44:24] total 621576
[2025-11-25 19:44:24] -rw-r--r--. 2 boincer umatlas 287673146 Nov 25 12:56 ATLAS.root_0
[2025-11-25 19:44:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:56 start_atlas.sh
[2025-11-25 19:44:24] -rw-r--r--. 2 boincer umatlas    589940 Nov 25 12:56 input.tar.gz
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas 344354848 Nov 25 19:42 HITS.pool.root.1
[2025-11-25 19:44:24] -rw-------. 1 boincer umatlas   3840000 Nov 25 19:44 result.tar.gz
19:44:25 (1253800): run_atlas exited; CPU time 108460.977536
19:44:25 (1253800): called boinc_finish(0)

</stderr_txt>
]]>

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