Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:15:04 (2558011): wrapper (7.7.26015): starting
08:15:04 (2558011): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 08:15:04] Arguments: --nthreads 4
[2025-11-28 08:15:04] Threads: 4
[2025-11-28 08:15:04] Checking for CVMFS
[2025-11-28 08:15:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 08:15:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 08:15:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 08:15:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 08:15:04] 2.9.2.0 504476 13720 108852 153400 1 81 36385985 36864001 0 130560 0 5467974 99.945 671972 2898 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 08:15:04] CVMFS is ok
[2025-11-28 08:15:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 08:15:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 08:15:04] Further information can be found at the LHC@home message board.
[2025-11-28 08:15:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 08:15:04] Checking for apptainer binary...
[2025-11-28 08:15:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 08:15:04] Running /usr/bin/apptainer --version
[2025-11-28 08:15:04] apptainer version 1.4.1-1.1
[2025-11-28 08:15:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 08:15:04] thA338
[2025-11-28 08:15:04] apptainer works
[2025-11-28 08:15:04] Set ATHENA_PROC_NUMBER=4
[2025-11-28 08:15:04] Set ATHENA_CORE_NUMBER=4
[2025-11-28 08:15:04] Starting ATLAS job with PandaID=6896044034
[2025-11-28 08:15:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 15:10:58]  *** The last 200 lines of the pilot log: ***
[2025-11-28 15:10:58] 2025-11-28 14:10:27,086 | INFO     | did not find any defunct processes belonging to 2568416
[2025-11-28 15:10:58] 2025-11-28 14:10:27,087 | INFO     | did not find any defunct processes belonging to 2568416
[2025-11-28 15:10:58] 2025-11-28 14:10:27,088 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 15:10:58] 2025-11-28 14:10:27,088 | INFO     | ready for new job
[2025-11-28 15:10:58] 2025-11-28 14:10:27,088 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 15:10:58] 2025-11-28 14:10:27,089 | INFO     | ***************************************
[2025-11-28 15:10:58] 2025-11-28 14:10:27,089 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 15:10:58] 2025-11-28 14:10:27,089 | INFO     | ***************************************
[2025-11-28 15:10:58] 2025-11-28 14:10:27,089 | INFO     | 
[2025-11-28 15:10:58] 2025-11-28 14:10:27,090 | INFO     | architecture information:
[2025-11-28 15:10:58] 2025-11-28 14:10:27,090 | INFO     | executing command: cat /etc/os-release
[2025-11-28 15:10:58] 2025-11-28 14:10:27,104 | INFO     | cat /etc/os-release:
[2025-11-28 15:10:58] NAME="CentOS Linux"
[2025-11-28 15:10:58] VERSION="7 (Core)"
[2025-11-28 15:10:58] ID="centos"
[2025-11-28 15:10:58] ID_LIKE="rhel fedora"
[2025-11-28 15:10:58] VERSION_ID="7"
[2025-11-28 15:10:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 15:10:58] ANSI_COLOR="0;31"
[2025-11-28 15:10:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 15:10:58] HOME_URL="https://www.centos.org/"
[2025-11-28 15:10:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 15:10:58] 
[2025-11-28 15:10:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 15:10:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 15:10:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 15:10:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 15:10:58] 
[2025-11-28 15:10:58] 2025-11-28 14:10:27,104 | INFO     | ***************************************
[2025-11-28 15:10:58] 2025-11-28 14:10:27,608 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 15:10:58] 2025-11-28 14:10:27,626 | INFO     | sufficient remaining disk space (219549794304 B)
[2025-11-28 15:10:58] 2025-11-28 14:10:27,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 15:10:58] 2025-11-28 14:10:27,627 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 15:10:58] 2025-11-28 14:10:27,627 | INFO     | update_server=False
[2025-11-28 15:10:58] 2025-11-28 14:10:27,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 15:10:58] 2025-11-28 14:10:27,627 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 15:10:58] 2025-11-28 14:10:27,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 15:10:58] 2025-11-28 14:10:27,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 15:10:58] 2025-11-28 14:10:27,878 | INFO     | all data control threads have been joined
[2025-11-28 15:10:58] 2025-11-28 14:10:28,195 | INFO     | all job control threads have been joined
[2025-11-28 15:10:58] 2025-11-28 14:10:28,207 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 15:10:58] 2025-11-28 14:10:28,207 | INFO     | aborting loop
[2025-11-28 15:10:58] 2025-11-28 14:10:28,632 | INFO     | [job] retrieve thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:28,633 | INFO     | [job] queue monitor thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:28,639 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:28,763 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:28,884 | INFO     | [data] control thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:28,975 | INFO     | all payload control threads have been joined
[2025-11-28 15:10:58] 2025-11-28 14:10:28,981 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:29,201 | INFO     | [job] control thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:29,212 | INFO     | [job] job monitor thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:29,438 | INFO     | [data] copytool_in thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:29,478 | INFO     | [payload] failed_post thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:29,633 | INFO     | [data] copytool_out thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:29,933 | INFO     | [payload] validate_post thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:29,965 | INFO     | [job] validate thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:29,980 | INFO     | [payload] control thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:31,634 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:38,351 | INFO     | job.realtimelogging is not enabled
[2025-11-28 15:10:58] 2025-11-28 14:10:39,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 15:10:58] 2025-11-28 14:10:43,553 | INFO     | [monitor] cgroup control has ended
[2025-11-28 15:10:58] 2025-11-28 14:10:44,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140015152662336)>', '<ExcThread(monitor, started 140014390343424)>']
[2025-11-28 15:10:58] 2025-11-28 14:10:49,101 | INFO     | all workflow threads have been joined
[2025-11-28 15:10:58] 2025-11-28 14:10:49,101 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 15:10:58] 2025-11-28 14:10:49,101 | INFO     | traces error code: 0
[2025-11-28 15:10:58] 2025-11-28 14:10:49,102 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 15:10:58] 2025-11-28 14:10:58,651 | INFO     | PID=2561813 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 15:10:58] 2025-11-28 14:10:58,651 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 15:10:58] 2025-11-28 14:10:58,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 15:10:58] 2025-11-28 14:10:58,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 15:10:58] 2025-11-28 14:10:58,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 15:10:58] 2025-11-28 14:10:58,651 | INFO     | [monitor] control thread has ended
[2025-11-28 15:10:58] 2025-11-28 14:10:58,728 [wrapper] ==== pilot stdout END ====
[2025-11-28 15:10:58] 2025-11-28 14:10:58,732 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 15:10:58] 2025-11-28 14:10:58,736 [wrapper] pilotpid: 2561813
[2025-11-28 15:10:58] 2025-11-28 14:10:58,740 [wrapper] Pilot exit status: 0
[2025-11-28 15:10:58] 2025-11-28 14:10:58,752 [wrapper] pandaids: 6896044034
[2025-11-28 15:10:58] 2025-11-28 14:10:58,775 [wrapper] cleanup supervisor_pilot 2614897 2561814
[2025-11-28 15:10:58] 2025-11-28 14:10:58,779 [wrapper] Test setup, not cleaning
[2025-11-28 15:10:58] 2025-11-28 14:10:58,783 [wrapper] apfmon messages muted
[2025-11-28 15:10:58] 2025-11-28 14:10:58,786 [wrapper] ==== wrapper stdout END ====
[2025-11-28 15:10:58] 2025-11-28 14:10:58,791 [wrapper] ==== wrapper stderr END ====
[2025-11-28 15:10:58]  *** Error codes and diagnostics ***
[2025-11-28 15:10:58]     "exeErrorCode": 0,
[2025-11-28 15:10:58]     "exeErrorDiag": "",
[2025-11-28 15:10:58]     "pilotErrorCode": 0,
[2025-11-28 15:10:58]     "pilotErrorDiag": "",
[2025-11-28 15:10:58]  *** Listing of results directory ***
[2025-11-28 15:10:58] total 1326512
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc    576529 Nov 24 18:01 pilot3.tar.gz
[2025-11-28 15:10:58] -rwx------ 1 boinc boinc     36292 Nov 24 18:43 runpilot2-wrapper.sh
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc      5112 Nov 24 18:43 queuedata.json
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc       100 Nov 28 08:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 15:10:58] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 08:15 run_atlas
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc       105 Nov 28 08:15 job.xml
[2025-11-28 15:10:58] -rw-r--r-- 2 boinc boinc 409851187 Nov 28 08:15 EVNT.47483658._003020.pool.root.1
[2025-11-28 15:10:58] -rw-r--r-- 2 boinc boinc    590096 Nov 28 08:15 input.tar.gz
[2025-11-28 15:10:58] -rw-r--r-- 2 boinc boinc     15847 Nov 28 08:15 start_atlas.sh
[2025-11-28 15:10:58] drwxrwx--x 2 boinc boinc      4096 Nov 28 08:15 shared
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc         0 Nov 28 08:15 boinc_setup_complete
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc      6376 Nov 28 08:15 init_data.xml
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc         0 Nov 28 08:15 boinc_lockfile
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc      2784 Nov 28 08:15 pandaJob.out
[2025-11-28 15:10:58] -rw------- 1 boinc boinc    991866 Nov 28 08:15 agis_schedconf.cvmfs.json
[2025-11-28 15:10:58] drwx------ 5 boinc boinc      4096 Nov 28 08:15 pilot3
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc       532 Nov 28 15:06 boinc_task_state.xml
[2025-11-28 15:10:58] -rw------- 1 boinc boinc 935044650 Nov 28 15:09 HITS.47556173._000028.pool.root.1
[2025-11-28 15:10:58] -rw------- 1 boinc boinc      1029 Nov 28 15:10 memory_monitor_summary.json
[2025-11-28 15:10:58] -rw------- 1 boinc boinc   1516240 Nov 28 15:10 agis_ddmendpoints.agis.ALL.json
[2025-11-28 15:10:58] -rw------- 1 boinc boinc   1258166 Nov 28 15:10 log.47556173._000028.job.log.tgz.1
[2025-11-28 15:10:58] -rw------- 1 boinc boinc      8581 Nov 28 15:10 heartbeat.json
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc      8192 Nov 28 15:10 boinc_mmap_file
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc        28 Nov 28 15:10 wrapper_checkpoint.txt
[2025-11-28 15:10:58] -rw------- 1 boinc boinc       747 Nov 28 15:10 pilotlog.txt
[2025-11-28 15:10:58] -rw------- 1 boinc boinc        95 Nov 28 15:10 pilot_heartbeat.json
[2025-11-28 15:10:58] -rw------- 1 boinc boinc   3514976 Nov 28 15:10 log.47556173._000028.job.log.1
[2025-11-28 15:10:58] -rw------- 1 boinc boinc       353 Nov 28 15:10 output.list
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc       620 Nov 28 15:10 runtime_log
[2025-11-28 15:10:58] -rw------- 1 boinc boinc   4792320 Nov 28 15:10 result.tar.gz
[2025-11-28 15:10:58] -rw------- 1 boinc boinc       665 Nov 28 15:10 ullMDmAmph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDpLKDmlj4s8n.diag
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc      8898 Nov 28 15:10 runtime_log.err
[2025-11-28 15:10:58] -rw-r--r-- 1 boinc boinc     10074 Nov 28 15:10 stderr.txt
[2025-11-28 15:10:58] HITS file was successfully produced:
[2025-11-28 15:10:58] -rw------- 1 boinc boinc 935044650 Nov 28 15:09 shared/HITS.pool.root.1
[2025-11-28 15:10:58]  *** Contents of shared directory: ***
[2025-11-28 15:10:58] total 1318664
[2025-11-28 15:10:58] -rw-r--r-- 2 boinc boinc 409851187 Nov 28 08:15 ATLAS.root_0
[2025-11-28 15:10:58] -rw-r--r-- 2 boinc boinc    590096 Nov 28 08:15 input.tar.gz
[2025-11-28 15:10:58] -rw-r--r-- 2 boinc boinc     15847 Nov 28 08:15 start_atlas.sh
[2025-11-28 15:10:58] -rw------- 1 boinc boinc 935044650 Nov 28 15:09 HITS.pool.root.1
[2025-11-28 15:10:58] -rw------- 1 boinc boinc   4792320 Nov 28 15:10 result.tar.gz
15:11:21 (2558011): run_atlas exited; CPU time 97613.889818
15:11:21 (2558011): called boinc_finish(0)

</stderr_txt>
]]>

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