Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:22:05 (811904): wrapper (7.7.26015): starting
12:22:05 (811904): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:22:05] Arguments: --nthreads 8
[2025-11-25 12:22:05] Threads: 8
[2025-11-25 12:22:05] Checking for CVMFS
[2025-11-25 12:22:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:22:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:22:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:22:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:22:08] 2.13.3.0 12468 28907 361464 153291 2 332 30945242 32947200 32481 16776704 0 112472246 99.427 160541690 33832 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 12:22:08] CVMFS is ok
[2025-11-25 12:22:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:22:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:22:08] Further information can be found at the LHC@home message board.
[2025-11-25 12:22:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:22:08] Checking for apptainer binary...
[2025-11-25 12:22:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:22:08] Running /usr/bin/apptainer --version
[2025-11-25 12:22:08] apptainer version 1.4.4-1.el9
[2025-11-25 12:22:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:22:09] c6-6-8-1.aglt2.org
[2025-11-25 12:22:09] apptainer works
[2025-11-25 12:22:09] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:22:09] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:22:09] Starting ATLAS job with PandaID=6896044944
[2025-11-25 12:22:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:28:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:28:40] 2025-11-27 07:27:34,134 | INFO     | PID=818352 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 02:28:40] 2025-11-27 07:27:34,134 | INFO     | .. there are 39 such processes running
[2025-11-27 02:28:40] 2025-11-27 07:27:35,136 | INFO     | time since job start (137060s) is within the limit (172800.0s)
[2025-11-27 02:28:40] 2025-11-27 07:27:36,454 | INFO     | monitor loop #6878: job 0:6896044944 is in state 'finished'
[2025-11-27 02:28:40] 2025-11-27 07:27:36,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:40] 2025-11-27 07:27:37,145 | INFO     | time since job start (137062s) is within the limit (172800.0s)
[2025-11-27 02:28:40] 2025-11-27 07:27:38,965 | INFO     | monitor loop #6879: job 0:6896044944 is in state 'finished'
[2025-11-27 02:28:40] 2025-11-27 07:27:38,965 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:40] 2025-11-27 07:27:39,152 | INFO     | time since job start (137064s) is within the limit (172800.0s)
[2025-11-27 02:28:40] 2025-11-27 07:27:41,161 | INFO     | time since job start (137066s) is within the limit (172800.0s)
[2025-11-27 02:28:40] 2025-11-27 07:27:41,161 | INFO     | 137072s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 02:28:40] 2025-11-27 07:27:41,471 | INFO     | monitor loop #6880: job 0:6896044944 is in state 'finished'
[2025-11-27 02:28:40] 2025-11-27 07:27:41,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:40] 2025-11-27 07:27:42,410 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:28:40] 2025-11-27 07:27:42,433 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2620.295104166667
[2025-11-27 02:28:40] 2025-11-27 07:27:42,473 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896044944/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:28:40] 2025-11-27 07:27:42,502 | INFO     | extracted standard info from prmon json
[2025-11-27 02:28:40] 2025-11-27 07:27:42,503 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:28:40] 2025-11-27 07:27:42,503 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:28:40] 2025-11-27 07:27:42,613 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:28:40] 2025-11-27 07:27:42,624 | INFO     | sum of square deviations: 3508426611893.761
[2025-11-27 02:28:40] 2025-11-27 07:27:42,985 | INFO     | sum of deviations: 11288614932549.682
[2025-11-27 02:28:40] 2025-11-27 07:27:42,985 | INFO     | mean x: 1764159974.804009
[2025-11-27 02:28:40] 2025-11-27 07:27:42,985 | INFO     | mean y: 2910471.544766147
[2025-11-27 02:28:40] 2025-11-27 07:27:42,985 | INFO     | intersect: -5673401117.093374
[2025-11-27 02:28:40] 2025-11-27 07:27:42,996 | INFO     | chi2: 17.332468940416128
[2025-11-27 02:28:40] 2025-11-27 07:27:42,999 | INFO     | sum of square deviations: 3485039521178.7407
[2025-11-27 02:28:40] 2025-11-27 07:27:43,168 | INFO     | time since job start (137068s) is within the limit (172800.0s)
[2025-11-27 02:28:40] 2025-11-27 07:27:44,075 | INFO     | sum of deviations: 12038401961080.55
[2025-11-27 02:28:40] 2025-11-27 07:27:44,075 | INFO     | mean x: 1764159822.3142858
[2025-11-27 02:28:40] 2025-11-27 07:27:44,075 | INFO     | mean y: 2915359.7875
[2025-11-27 02:28:40] 2025-11-27 07:27:44,075 | INFO     | intersect: -6091037071.898159
[2025-11-27 02:28:40] 2025-11-27 07:27:44,098 | INFO     | chi2: 14.19931060207708
[2025-11-27 02:28:40] 2025-11-27 07:27:44,099 | INFO     | current chi2=14.19931060207708 (change=18.07681495988779 %)
[2025-11-27 02:28:40] 2025-11-27 07:27:44,099 | INFO     | right removable region: 2239
[2025-11-27 02:28:40] 2025-11-27 07:27:44,123 | INFO     | sum of square deviations: 3485033079143.112
[2025-11-27 02:28:40] 2025-11-27 07:27:44,212 | INFO     | monitor loop #6881: job 0:6896044944 is in state 'finished'
[2025-11-27 02:28:40] 2025-11-27 07:27:44,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:28:40] 2025-11-27 07:27:45,107 | INFO     | sum of deviations: 10447125193196.16
[2025-11-27 02:28:40] 2025-11-27 07:27:45,108 | INFO     | mean x: 1764160127.314732
[2025-11-27 02:28:40] 2025-11-27 07:27:45,108 | INFO     | mean y: 2915956.9316964285
[2025-11-27 02:28:40] 2025-11-27 07:27:45,108 | INFO     | intersect: -5285527880.575145
[2025-11-27 02:28:40] 2025-11-27 07:27:45,130 | INFO     | chi2: 13.869259047699028
[2025-11-27 02:28:40] 2025-11-27 07:27:45,130 | INFO     | current chi2=13.869259047699028 (change=19.98105350497142 %)
[2025-11-27 02:28:40] 2025-11-27 07:27:45,130 | INFO     | left removable region: 10
[2025-11-27 02:28:40] 2025-11-27 07:27:45,157 | INFO     | sum of square deviations: 3433941343735.204
[2025-11-27 02:28:40] 2025-11-27 07:27:45,205 | INFO     | time since job start (137070s) is within the limit (172800.0s)
[2025-11-27 02:28:40] 2025-11-27 07:27:45,628 | INFO     | sum of deviations: 10778762717328.533
[2025-11-27 02:28:40] 2025-11-27 07:27:45,628 | INFO     | mean x: 1764160096.8375952
[2025-11-27 02:28:40] 2025-11-27 07:27:45,628 | INFO     | mean y: 2925454.6451323465
[2025-11-27 02:28:40] 2025-11-27 07:27:45,628 | INFO     | intersect: -5534578298.551787
[2025-11-27 02:28:40] 2025-11-27 07:27:45,631 | INFO     | chi2: 8.760808201255621
[2025-11-27 02:28:40] 2025-11-27 07:27:45,631 | INFO     | current memory leak: 3.14 B/s (using 2229 data points, chi2=8.76)
[2025-11-27 02:28:40] 2025-11-27 07:27:45,633 | INFO     | could have reported an average CPU frequency of 2631 MHz (78 samples)
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | ..............................
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | . Timing measurements:
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | . get job = 0 s
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | . initial setup = 6 s
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | . payload setup = 41 s
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | . stage-in = 0 s
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | . payload execution = 136916 s
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | . stage-out = 8 s
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | . log creation = 3 s
[2025-11-27 02:28:40] 2025-11-27 07:27:45,634 | INFO     | ..............................
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | 
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | job summary report
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | --------------------------------------------------
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | PanDA job id: 6896044944
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | task id: 47556173
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | errors: (none)
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | pilot state: finished 
[2025-11-27 02:28:40] 2025-11-27 07:27:46,166 | INFO     | transexitcode: 0
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | exeerrorcode: 0
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | exeerrordiag: 
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | exitcode: 0
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | exitmsg: OK
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | cpuconsumptiontime: 279332 s
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | nevents: 1000
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | neventsw: 0
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | pid: 828195
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | pgrp: 828195
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | corecount: 8
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | event service: False
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | sizes: {0: 2284142, 1: 2284170, 2: 2284341, 13: 2284369, 24: 2284425, 29: 2284715, 35: 2284871, 136962: 2371211, 136971: 2380205, 136972: 2380261, 137007: 2380507}
[2025-11-27 02:28:40] 2025-11-27 07:27:46,167 | INFO     | --------------------------------------------------
[2025-11-27 02:28:40] 2025-11-27 07:27:46,168 | INFO     | 
[2025-11-27 02:28:40] 2025-11-27 07:27:46,168 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 02:28:40] 2025-11-27 07:27:46,221 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,222 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | job 6896044944 has completed (purged errors)
[2025-11-27 02:28:40] 2025-11-27 07:27:46,223 | INFO     | overall cleanup function is called
[2025-11-27 02:28:40] 2025-11-27 07:27:47,256 | INFO     | --- collectZombieJob: --- 10, [828195]
[2025-11-27 02:28:40] 2025-11-27 07:27:47,256 | INFO     | zombie collector waiting for pid 828195
[2025-11-27 02:28:40] 2025-11-27 07:27:47,256 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:28:40] 2025-11-27 07:27:47,256 | INFO     | collected zombie processes
[2025-11-27 02:28:40] 2025-11-27 07:27:47,256 | INFO     | will attempt to kill all subprocesses of pid=828195
[2025-11-27 02:28:40] 2025-11-27 07:27:49,096 | INFO     | process IDs to be killed: [828195] (in reverse order)
[2025-11-27 02:28:40] 2025-11-27 07:27:50,043 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:28:40] 2025-11-27 07:27:50,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:28:40] 2025-11-27 07:27:50,108 | INFO     | did not find any defunct processes belonging to 828195
[2025-11-27 02:28:40] 2025-11-27 07:27:50,167 | INFO     | did not find any defunct processes belonging to 828195
[2025-11-27 02:28:40] 2025-11-27 07:27:50,172 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:28:40] 2025-11-27 07:27:50,172 | INFO     | ready for new job
[2025-11-27 02:28:40] 2025-11-27 07:27:50,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:28:40] 2025-11-27 07:27:50,188 | INFO     | ***************************************
[2025-11-27 02:28:40] 2025-11-27 07:27:50,196 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:28:40] 2025-11-27 07:27:50,196 | INFO     | ***************************************
[2025-11-27 02:28:40] 2025-11-27 07:27:50,196 | INFO     | 
[2025-11-27 02:28:40] 2025-11-27 07:27:50,210 | INFO     | architecture information:
[2025-11-27 02:28:40] 2025-11-27 07:27:50,213 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:28:40] 2025-11-27 07:27:50,284 | INFO     | cat /etc/os-release:
[2025-11-27 02:28:40] NAME="CentOS Linux"
[2025-11-27 02:28:40] VERSION="7 (Core)"
[2025-11-27 02:28:40] ID="centos"
[2025-11-27 02:28:40] ID_LIKE="rhel fedora"
[2025-11-27 02:28:40] VERSION_ID="7"
[2025-11-27 02:28:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:28:40] ANSI_COLOR="0;31"
[2025-11-27 02:28:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:28:40] HOME_URL="https://www.centos.org/"
[2025-11-27 02:28:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:28:40] 
[2025-11-27 02:28:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:28:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:28:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:28:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:28:40] 
[2025-11-27 02:28:40] 2025-11-27 07:27:50,285 | INFO     | ***************************************
[2025-11-27 02:28:40] 2025-11-27 07:27:50,788 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 02:28:40] 2025-11-27 07:27:50,862 | INFO     | sufficient remaining disk space (70604816384 B)
[2025-11-27 02:28:40] 2025-11-27 07:27:50,862 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:28:40] 2025-11-27 07:27:50,862 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:28:40] 2025-11-27 07:27:50,862 | INFO     | update_server=False
[2025-11-27 02:28:40] 2025-11-27 07:27:50,862 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:28:40] 2025-11-27 07:27:50,879 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:28:40] 2025-11-27 07:27:50,880 | INFO     | aborting loop
[2025-11-27 02:28:40] 2025-11-27 07:27:50,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:28:40] 2025-11-27 07:27:51,211 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:28:40] 2025-11-27 07:27:51,492 | INFO     | all job control threads have been joined
[2025-11-27 02:28:40] 2025-11-27 07:27:51,829 | INFO     | all data control threads have been joined
[2025-11-27 02:28:40] 2025-11-27 07:27:51,868 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:51,905 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:51,937 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:52,200 | INFO     | all payload control threads have been joined
[2025-11-27 02:28:40] 2025-11-27 07:27:52,217 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:52,240 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:52,496 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:52,497 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:52,498 | INFO     | [job] control thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:52,835 | INFO     | [data] control thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:52,964 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:52,971 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:53,037 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:53,211 | INFO     | [payload] control thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:53,236 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:28:40] 2025-11-27 07:27:53,246 | INFO     | [job] validate thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:53,306 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:27:57,261 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:28:40] 2025-11-27 07:28:20,018 | INFO     | PID=818352 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 02:28:40] 2025-11-27 07:28:20,018 | INFO     | .. there are 38 such processes running
[2025-11-27 02:28:40] 2025-11-27 07:28:20,019 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:28:40] 2025-11-27 07:28:20,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:28:40] 2025-11-27 07:28:20,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:28:40] 2025-11-27 07:28:32,300 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:28:40] 2025-11-27 07:28:33,989 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712727545664)>', '<ExcThread(monitor, started 139712375277312)>']
[2025-11-27 02:28:40] 2025-11-27 07:28:34,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:28:40] 2025-11-27 07:28:34,117 | INFO     | [monitor] control thread has ended
[2025-11-27 02:28:40] 2025-11-27 07:28:39,015 | INFO     | all workflow threads have been joined
[2025-11-27 02:28:40] 2025-11-27 07:28:39,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:28:40] 2025-11-27 07:28:39,015 | INFO     | traces error code: 0
[2025-11-27 02:28:40] 2025-11-27 07:28:39,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:28:40] 2025-11-27 07:28:39,477 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:28:40] 2025-11-27 07:28:39,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:28:40] 2025-11-27 07:28:39,522 [wrapper] pilotpid: 818352
[2025-11-27 02:28:40] 2025-11-27 07:28:39,530 [wrapper] Pilot exit status: 0
[2025-11-27 02:28:40] 2025-11-27 07:28:39,547 [wrapper] pandaids: 6896044944
[2025-11-27 02:28:40] 2025-11-27 07:28:39,657 [wrapper] cleanup supervisor_pilot  931932 818353
[2025-11-27 02:28:40] 2025-11-27 07:28:39,666 [wrapper] Test setup, not cleaning
[2025-11-27 02:28:40] 2025-11-27 07:28:39,767 [wrapper] apfmon messages muted
[2025-11-27 02:28:40] 2025-11-27 07:28:39,794 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:28:40] 2025-11-27 07:28:39,828 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:28:40]  *** Error codes and diagnostics ***
[2025-11-27 02:28:40]     "exeErrorCode": 0,
[2025-11-27 02:28:40]     "exeErrorDiag": "",
[2025-11-27 02:28:40]     "pilotErrorCode": 0,
[2025-11-27 02:28:40]     "pilotErrorDiag": "",
[2025-11-27 02:28:40]  *** Listing of results directory ***
[2025-11-27 02:28:40] total 1329400
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 13:41 queuedata.json
[2025-11-27 02:28:40] -rwx------ 1 boincer umatlas     36292 Nov 24 13:45 runpilot2-wrapper.sh
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas       100 Nov 25 12:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:28:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 12:22 run_atlas
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas       105 Nov 25 12:22 job.xml
[2025-11-27 02:28:40] -rw-r--r-- 2 boincer umatlas 408057081 Nov 25 12:22 EVNT.47483658._003031.pool.root.1
[2025-11-27 02:28:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 12:22 start_atlas.sh
[2025-11-27 02:28:40] drwxrwx--x 2 boincer umatlas      4096 Nov 25 12:22 shared
[2025-11-27 02:28:40] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 12:22 input.tar.gz
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas         0 Nov 25 12:22 boinc_lockfile
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 12:22 pandaJob.out
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas        57 Nov 25 12:22 setup.sh.local
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas    991543 Nov 25 12:23 agis_schedconf.cvmfs.json
[2025-11-27 02:28:40] drwx------ 5 boincer umatlas      4096 Nov 25 12:23 pilot3
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas       534 Nov 27 01:55 boinc_task_state.xml
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas 912684208 Nov 27 02:25 HITS.47556173._000134.pool.root.1
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas      1065 Nov 27 02:26 memory_monitor_summary.json
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas   1516240 Nov 27 02:27 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas   2909189 Nov 27 02:27 log.47556173._000134.job.log.tgz.1
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas        95 Nov 27 02:27 pilot_heartbeat.json
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas      8640 Nov 27 02:27 heartbeat.json
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas      6878 Nov 27 02:28 init_data.xml
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas      4823 Nov 27 02:28 pilotlog.txt
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 02:28 boinc_mmap_file
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas  15405995 Nov 27 02:28 log.47556173._000134.job.log.1
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas       353 Nov 27 02:28 output.list
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas        30 Nov 27 02:28 wrapper_checkpoint.txt
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas       620 Nov 27 02:28 runtime_log
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas  18339840 Nov 27 02:28 result.tar.gz
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas      9344 Nov 27 02:28 runtime_log.err
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas       664 Nov 27 02:28 3LPLDmqjqh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfqLKDmmwo1Fo.diag
[2025-11-27 02:28:40] -rw-r--r-- 1 boincer umatlas     21885 Nov 27 02:28 stderr.txt
[2025-11-27 02:28:40] HITS file was successfully produced:
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas 912684208 Nov 27 02:25 shared/HITS.pool.root.1
[2025-11-27 02:28:40]  *** Contents of shared directory: ***
[2025-11-27 02:28:40] total 1308308
[2025-11-27 02:28:40] -rw-r--r-- 2 boincer umatlas 408057081 Nov 25 12:22 ATLAS.root_0
[2025-11-27 02:28:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 12:22 start_atlas.sh
[2025-11-27 02:28:40] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 12:22 input.tar.gz
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas 912684208 Nov 27 02:25 HITS.pool.root.1
[2025-11-27 02:28:40] -rw------- 1 boincer umatlas  18339840 Nov 27 02:28 result.tar.gz
02:29:02 (811904): run_atlas exited; CPU time 284893.377552
02:29:02 (811904): called boinc_finish(0)

</stderr_txt>
]]>

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