Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:19:41 (22256): wrapper (7.7.26015): starting
03:19:41 (22256): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 03:19:41] Arguments: --nthreads 8
[2025-11-28 03:19:41] Threads: 8
[2025-11-28 03:19:41] Checking for CVMFS
[2025-11-28 03:19:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 03:19:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 03:19:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 03:19:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 03:19:45] 2.11.2.0 24289 287473 139092 153393 1 18 18273989 25165825 1294 130560 11 141138348 99.884 72804897 2901 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 03:19:45] CVMFS is ok
[2025-11-28 03:19:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 03:19:45] Checking for apptainer binary...
[2025-11-28 03:19:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 03:19:45] Running /usr/bin/apptainer --version
[2025-11-28 03:19:45] apptainer version 1.3.2-1.el7
[2025-11-28 03:19:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 03:19:57] cg-vwn388.simple-grid.lan
[2025-11-28 03:19:57] apptainer works
[2025-11-28 03:19:57] Set ATHENA_PROC_NUMBER=8
[2025-11-28 03:19:57] Set ATHENA_CORE_NUMBER=8
[2025-11-28 03:19:57] Starting ATLAS job with PandaID=6896044049
[2025-11-28 03:19:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 03:05:40]  *** The last 200 lines of the pilot log: ***
[2025-11-29 03:05:40] 2025-11-29 02:04:50,902 | INFO     | .. there are 9 such processes running
[2025-11-29 03:05:40] 2025-11-29 02:04:51,907 | INFO     | time since job start (85270s) is within the limit (172800.0s)
[2025-11-29 03:05:40] 2025-11-29 02:04:53,124 | INFO     | monitor loop #5759: job 0:6896044049 is in state 'finished'
[2025-11-29 03:05:40] 2025-11-29 02:04:53,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 03:05:40] 2025-11-29 02:04:53,914 | INFO     | time since job start (85272s) is within the limit (172800.0s)
[2025-11-29 03:05:40] 2025-11-29 02:04:55,629 | INFO     | monitor loop #5760: job 0:6896044049 is in state 'finished'
[2025-11-29 03:05:40] 2025-11-29 02:04:55,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 03:05:40] 2025-11-29 02:04:55,921 | INFO     | time since job start (85274s) is within the limit (172800.0s)
[2025-11-29 03:05:40] 2025-11-29 02:04:57,929 | INFO     | time since job start (85276s) is within the limit (172800.0s)
[2025-11-29 03:05:40] 2025-11-29 02:04:58,133 | INFO     | monitor loop #5761: job 0:6896044049 is in state 'finished'
[2025-11-29 03:05:40] 2025-11-29 02:04:58,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 03:05:40] 2025-11-29 02:04:59,936 | INFO     | time since job start (85278s) is within the limit (172800.0s)
[2025-11-29 03:05:40] 2025-11-29 02:05:00,638 | INFO     | monitor loop #5762: job 0:6896044049 is in state 'finished'
[2025-11-29 03:05:40] 2025-11-29 02:05:00,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 03:05:40] 2025-11-29 02:05:01,166 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 03:05:40] 2025-11-29 02:05:01,168 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 03:05:40] 2025-11-29 02:05:01,171 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6896044049/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 03:05:40] 2025-11-29 02:05:01,172 | INFO     | extracted standard info from prmon json
[2025-11-29 03:05:40] 2025-11-29 02:05:01,172 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 03:05:40] 2025-11-29 02:05:01,172 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 03:05:40] 2025-11-29 02:05:01,213 | INFO     | fitting pss+swap vs Time
[2025-11-29 03:05:40] 2025-11-29 02:05:01,216 | INFO     | sum of square deviations: 829175794881.674
[2025-11-29 03:05:40] 2025-11-29 02:05:01,312 | INFO     | sum of deviations: 3695075974907.248
[2025-11-29 03:05:40] 2025-11-29 02:05:01,313 | INFO     | mean x: 1764339438.5979826
[2025-11-29 03:05:40] 2025-11-29 02:05:01,313 | INFO     | mean y: 2846296.446685879
[2025-11-29 03:05:40] 2025-11-29 02:05:01,313 | INFO     | intersect: -7859621845.276003
[2025-11-29 03:05:40] 2025-11-29 02:05:01,315 | INFO     | chi2: 20.609707779427186
[2025-11-29 03:05:40] 2025-11-29 02:05:01,317 | INFO     | sum of square deviations: 820247664380.6257
[2025-11-29 03:05:40] 2025-11-29 02:05:01,454 | INFO     | sum of deviations: 4163140121805.753
[2025-11-29 03:05:40] 2025-11-29 02:05:01,454 | INFO     | mean x: 1764339286.1019523
[2025-11-29 03:05:40] 2025-11-29 02:05:01,454 | INFO     | mean y: 2854290.64714389
[2025-11-29 03:05:40] 2025-11-29 02:05:01,454 | INFO     | intersect: -8951991897.175358
[2025-11-29 03:05:40] 2025-11-29 02:05:01,456 | INFO     | chi2: 17.362958791462706
[2025-11-29 03:05:40] 2025-11-29 02:05:01,456 | INFO     | current chi2=17.362958791462706 (change=15.753493560958768 %)
[2025-11-29 03:05:40] 2025-11-29 02:05:01,456 | INFO     | right removable region: 1382
[2025-11-29 03:05:40] 2025-11-29 02:05:01,491 | INFO     | sum of square deviations: 820246734740.6262
[2025-11-29 03:05:40] 2025-11-29 02:05:01,582 | INFO     | sum of deviations: 3113681222992.1924
[2025-11-29 03:05:40] 2025-11-29 02:05:01,583 | INFO     | mean x: 1764339591.1019523
[2025-11-29 03:05:40] 2025-11-29 02:05:01,583 | INFO     | mean y: 2856225.6297903107
[2025-11-29 03:05:40] 2025-11-29 02:05:01,583 | INFO     | intersect: -6694629814.998002
[2025-11-29 03:05:40] 2025-11-29 02:05:01,585 | INFO     | chi2: 15.87351132764958
[2025-11-29 03:05:40] 2025-11-29 02:05:01,585 | INFO     | current chi2=15.87351132764958 (change=22.980415357976717 %)
[2025-11-29 03:05:40] 2025-11-29 02:05:01,585 | INFO     | left removable region: 10
[2025-11-29 03:05:40] 2025-11-29 02:05:01,587 | INFO     | sum of square deviations: 800830020842.1609
[2025-11-29 03:05:40] 2025-11-29 02:05:01,658 | INFO     | sum of deviations: 3186331557334.718
[2025-11-29 03:05:40] 2025-11-29 02:05:01,658 | INFO     | mean x: 1764339560.6107872
[2025-11-29 03:05:40] 2025-11-29 02:05:01,658 | INFO     | mean y: 2874879.978862974
[2025-11-29 03:05:40] 2025-11-29 02:05:01,659 | INFO     | intersect: -7017055284.372756
[2025-11-29 03:05:40] 2025-11-29 02:05:01,660 | INFO     | chi2: 8.289117015701821
[2025-11-29 03:05:40] 2025-11-29 02:05:01,661 | INFO     | current memory leak: 3.98 B/s (using 1372 data points, chi2=8.29)
[2025-11-29 03:05:40] 2025-11-29 02:05:01,662 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | ..............................
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | . Timing measurements:
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | . get job = 0 s
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | . initial setup = 7 s
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | . payload setup = 161 s
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | . stage-in = 0 s
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | . payload execution = 84825 s
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | . stage-out = 5 s
[2025-11-29 03:05:40] 2025-11-29 02:05:01,663 | INFO     | . log creation = 2 s
[2025-11-29 03:05:40] 2025-11-29 02:05:01,664 | INFO     | ..............................
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | 
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | job summary report
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | --------------------------------------------------
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | PanDA job id: 6896044049
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | task id: 47556173
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | errors: (none)
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | pilot state: finished 
[2025-11-29 03:05:40] 2025-11-29 02:05:01,767 | INFO     | transexitcode: 0
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | exeerrorcode: 0
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | exeerrordiag: 
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | exitcode: 0
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | exitmsg: OK
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | cpuconsumptiontime: 318256 s
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | nevents: 1000
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | neventsw: 0
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | pid: 32637
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | pgrp: 32637
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | corecount: 8
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | event service: False
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | sizes: {0: 2284141, 1: 2284340, 12: 2284340, 23: 2284368, 33: 2284396, 44: 2284452, 55: 2284608, 66: 2284636, 76: 2284664, 87: 2284720, 92: 2285010, 98: 2285318, 8
[2025-11-29 03:05:40] 2025-11-29 02:05:01,768 | INFO     | --------------------------------------------------
[2025-11-29 03:05:40] 2025-11-29 02:05:01,769 | INFO     | 
[2025-11-29 03:05:40] 2025-11-29 02:05:01,769 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-29 03:05:40] 2025-11-29 02:05:01,944 | INFO     | time since job start (85280s) is within the limit (172800.0s)
[2025-11-29 03:05:40] 2025-11-29 02:05:02,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | job 6896044049 has completed (purged errors)
[2025-11-29 03:05:40] 2025-11-29 02:05:02,119 | INFO     | overall cleanup function is called
[2025-11-29 03:05:40] 2025-11-29 02:05:03,135 | INFO     | --- collectZombieJob: --- 10, [32637]
[2025-11-29 03:05:40] 2025-11-29 02:05:03,135 | INFO     | zombie collector waiting for pid 32637
[2025-11-29 03:05:40] 2025-11-29 02:05:03,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 03:05:40] 2025-11-29 02:05:03,135 | INFO     | collected zombie processes
[2025-11-29 03:05:40] 2025-11-29 02:05:03,136 | INFO     | will attempt to kill all subprocesses of pid=32637
[2025-11-29 03:05:40] 2025-11-29 02:05:03,230 | INFO     | process IDs to be killed: [32637] (in reverse order)
[2025-11-29 03:05:40] 2025-11-29 02:05:04,042 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 03:05:40] 2025-11-29 02:05:04,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 03:05:40] 2025-11-29 02:05:04,045 | INFO     | did not find any defunct processes belonging to 32637
[2025-11-29 03:05:40] 2025-11-29 02:05:04,053 | INFO     | did not find any defunct processes belonging to 32637
[2025-11-29 03:05:40] 2025-11-29 02:05:04,100 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 03:05:40] 2025-11-29 02:05:04,100 | INFO     | ready for new job
[2025-11-29 03:05:40] 2025-11-29 02:05:04,101 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 03:05:40] 2025-11-29 02:05:04,106 | INFO     | ***************************************
[2025-11-29 03:05:40] 2025-11-29 02:05:04,106 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 03:05:40] 2025-11-29 02:05:04,106 | INFO     | ***************************************
[2025-11-29 03:05:40] 2025-11-29 02:05:04,106 | INFO     | 
[2025-11-29 03:05:40] 2025-11-29 02:05:04,107 | INFO     | pilot is running in a VM
[2025-11-29 03:05:40] 2025-11-29 02:05:04,107 | INFO     | architecture information:
[2025-11-29 03:05:40] 2025-11-29 02:05:04,119 | INFO     | executing command: cat /etc/os-release
[2025-11-29 03:05:40] 2025-11-29 02:05:04,415 | INFO     | cat /etc/os-release:
[2025-11-29 03:05:40] NAME="CentOS Linux"
[2025-11-29 03:05:40] VERSION="7 (Core)"
[2025-11-29 03:05:40] ID="centos"
[2025-11-29 03:05:40] ID_LIKE="rhel fedora"
[2025-11-29 03:05:40] VERSION_ID="7"
[2025-11-29 03:05:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 03:05:40] ANSI_COLOR="0;31"
[2025-11-29 03:05:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 03:05:40] HOME_URL="https://www.centos.org/"
[2025-11-29 03:05:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 03:05:40] 
[2025-11-29 03:05:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 03:05:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 03:05:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 03:05:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 03:05:40] 
[2025-11-29 03:05:40] 2025-11-29 02:05:04,415 | INFO     | ***************************************
[2025-11-29 03:05:40] 2025-11-29 02:05:04,918 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-29 03:05:40] 2025-11-29 02:05:05,098 | INFO     | sufficient remaining disk space (493579403264 B)
[2025-11-29 03:05:40] 2025-11-29 02:05:05,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 03:05:40] 2025-11-29 02:05:05,099 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 03:05:40] 2025-11-29 02:05:05,099 | INFO     | update_server=False
[2025-11-29 03:05:40] 2025-11-29 02:05:05,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 03:05:40] 2025-11-29 02:05:05,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 03:05:40] 2025-11-29 02:05:05,100 | INFO     | aborting loop
[2025-11-29 03:05:40] 2025-11-29 02:05:05,246 | INFO     | all payload control threads have been joined
[2025-11-29 03:05:40] 2025-11-29 02:05:05,465 | INFO     | all data control threads have been joined
[2025-11-29 03:05:40] 2025-11-29 02:05:05,734 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 03:05:40] 2025-11-29 02:05:06,105 | INFO     | [job] retrieve thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,106 | INFO     | [job] job monitor thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,252 | INFO     | [payload] control thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,288 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,471 | INFO     | [data] control thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,520 | INFO     | [data] copytool_in thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,557 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,585 | INFO     | [payload] failed_post thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,620 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,652 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:06,733 | INFO     | all job control threads have been joined
[2025-11-29 03:05:40] 2025-11-29 02:05:06,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 03:05:40] 2025-11-29 02:05:07,024 | INFO     | [job] validate thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:07,215 | INFO     | [payload] validate_post thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:07,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 03:05:40] 2025-11-29 02:05:07,739 | INFO     | [job] control thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:07,741 | INFO     | [data] copytool_out thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:07,787 | INFO     | [job] queue monitor thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:09,812 | INFO     | [monitor] cgroup control has ended
[2025-11-29 03:05:40] 2025-11-29 02:05:11,353 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 03:05:40] 2025-11-29 02:05:13,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140535416788800)>', '<ExcThread(monitor, started 140534676973312)>']
[2025-11-29 03:05:40] 2025-11-29 02:05:18,318 | INFO     | all workflow threads have been joined
[2025-11-29 03:05:40] 2025-11-29 02:05:18,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 03:05:40] 2025-11-29 02:05:18,318 | INFO     | traces error code: 0
[2025-11-29 03:05:40] 2025-11-29 02:05:18,319 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 03:05:40] 2025-11-29 02:05:33,960 | INFO     | 85289s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-29 03:05:40] 2025-11-29 02:05:35,089 | INFO     | PID=26034 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 03:05:40] 2025-11-29 02:05:35,089 | INFO     | .. there are 9 such processes running
[2025-11-29 03:05:40] 2025-11-29 02:05:35,089 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 03:05:40] 2025-11-29 02:05:35,090 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 03:05:40] 2025-11-29 02:05:35,090 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 03:05:40] 2025-11-29 02:05:35,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 03:05:40] 2025-11-29 02:05:35,090 | INFO     | [monitor] control thread has ended
[2025-11-29 03:05:40] 2025-11-29 02:05:35,336 [wrapper] ==== pilot stdout END ====
[2025-11-29 03:05:40] 2025-11-29 02:05:35,377 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 03:05:40] 2025-11-29 02:05:35,493 [wrapper] pilotpid: 26034
[2025-11-29 03:05:40] 2025-11-29 02:05:35,561 [wrapper] Pilot exit status: 0
[2025-11-29 03:05:40] 2025-11-29 02:05:36,031 [wrapper] pandaids: 6896044049
[2025-11-29 03:05:40] 2025-11-29 02:05:37,165 [wrapper] cleanup supervisor_pilot 28974 26035
[2025-11-29 03:05:40] 2025-11-29 02:05:37,276 [wrapper] Test setup, not cleaning
[2025-11-29 03:05:40] 2025-11-29 02:05:37,378 [wrapper] apfmon messages muted
[2025-11-29 03:05:40] 2025-11-29 02:05:37,470 [wrapper] ==== wrapper stdout END ====
[2025-11-29 03:05:40] 2025-11-29 02:05:37,563 [wrapper] ==== wrapper stderr END ====
[2025-11-29 03:05:40]  *** Error codes and diagnostics ***
[2025-11-29 03:05:40]     "exeErrorCode": 0,
[2025-11-29 03:05:40]     "exeErrorDiag": "",
[2025-11-29 03:05:40]     "pilotErrorCode": 0,
[2025-11-29 03:05:40]     "pilotErrorDiag": "",
[2025-11-29 03:05:40]  *** Listing of results directory ***
[2025-11-29 03:05:40] total 1335856
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc    576529 Nov 24 18:01 pilot3.tar.gz
[2025-11-29 03:05:40] -rwx------. 1 boinc boinc     36292 Nov 24 18:47 runpilot2-wrapper.sh
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc      5112 Nov 24 18:47 queuedata.json
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc       100 Nov 28 03:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 03:05:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 03:19 run_atlas
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc       105 Nov 28 03:19 job.xml
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc      6392 Nov 28 03:19 init_data.xml
[2025-11-29 03:05:40] -rw-r--r--. 2 boinc boinc 409600957 Nov 28 03:19 EVNT.47483658._003022.pool.root.1
[2025-11-29 03:05:40] -rw-r--r--. 2 boinc boinc     15847 Nov 28 03:19 start_atlas.sh
[2025-11-29 03:05:40] drwxrwx--x. 2 boinc boinc        68 Nov 28 03:19 shared
[2025-11-29 03:05:40] -rw-r--r--. 2 boinc boinc    590098 Nov 28 03:19 input.tar.gz
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc         0 Nov 28 03:19 boinc_lockfile
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc      2784 Nov 28 03:19 pandaJob.out
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc    991842 Nov 28 03:23 agis_schedconf.cvmfs.json
[2025-11-29 03:05:40] drwx------. 5 boinc boinc      4096 Nov 28 03:23 pilot3
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc       533 Nov 29 02:40 boinc_task_state.xml
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc 926665690 Nov 29 03:02 HITS.47556173._000043.pool.root.1
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc      1031 Nov 29 03:03 memory_monitor_summary.json
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc   1516240 Nov 29 03:03 agis_ddmendpoints.agis.ALL.json
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc   2478866 Nov 29 03:03 log.47556173._000043.job.log.tgz.1
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc      8627 Nov 29 03:05 heartbeat.json
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc      8192 Nov 29 03:05 boinc_mmap_file
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc        29 Nov 29 03:05 wrapper_checkpoint.txt
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc        95 Nov 29 03:05 pilot_heartbeat.json
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc       936 Nov 29 03:05 pilotlog.txt
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc  11394358 Nov 29 03:05 log.47556173._000043.job.log.1
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc       353 Nov 29 03:05 output.list
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc       620 Nov 29 03:05 runtime_log
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc  13895680 Nov 29 03:05 result.tar.gz
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc      8833 Nov 29 03:05 runtime_log.err
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc       662 Nov 29 03:05 1N3KDmGqph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLpLKDmq2ZGhn.diag
[2025-11-29 03:05:40] -rw-r--r--. 1 boinc boinc     21419 Nov 29 03:05 stderr.txt
[2025-11-29 03:05:40] HITS file was successfully produced:
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc 926665690 Nov 29 03:02 shared/HITS.pool.root.1
[2025-11-29 03:05:40]  *** Contents of shared directory: ***
[2025-11-29 03:05:40] total 1319120
[2025-11-29 03:05:40] -rw-r--r--. 2 boinc boinc 409600957 Nov 28 03:19 ATLAS.root_0
[2025-11-29 03:05:40] -rw-r--r--. 2 boinc boinc     15847 Nov 28 03:19 start_atlas.sh
[2025-11-29 03:05:40] -rw-r--r--. 2 boinc boinc    590098 Nov 28 03:19 input.tar.gz
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc 926665690 Nov 29 03:02 HITS.pool.root.1
[2025-11-29 03:05:40] -rw-------. 1 boinc boinc  13895680 Nov 29 03:05 result.tar.gz
03:05:41 (22256): run_atlas exited; CPU time 318838.045945
03:05:41 (22256): called boinc_finish(0)

</stderr_txt>
]]>

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