Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:03:03 (2412392): wrapper (7.7.26015): starting
08:03:03 (2412392): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 08:03:03] Arguments: --nthreads 12
[2025-11-25 08:03:03] Threads: 12
[2025-11-25 08:03:03] Checking for CVMFS
[2025-11-25 08:03:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:03:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:03:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:03:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:03:04] 2.11.5.0 2588556 26863 201868 153287 3 262 24572569 45568000 27847 130560 0 246011044 99.807 146850988 24326 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-25 08:03:04] CVMFS is ok
[2025-11-25 08:03:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:03:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:03:04] Further information can be found at the LHC@home message board.
[2025-11-25 08:03:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:03:04] Checking for apptainer binary...
[2025-11-25 08:03:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:03:04] Running /usr/bin/apptainer --version
[2025-11-25 08:03:04] apptainer version 1.4.1-1.el9
[2025-11-25 08:03:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:03:05] wns0052.triumf.lcg
[2025-11-25 08:03:05] apptainer works
[2025-11-25 08:03:05] Set ATHENA_PROC_NUMBER=12
[2025-11-25 08:03:05] Set ATHENA_CORE_NUMBER=12
[2025-11-25 08:03:05] Starting ATLAS job with PandaID=6896713660
[2025-11-25 08:03:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:11:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:11:57] 2025-11-25 16:10:54,212 | WARNING  | wrong length of table data, x=[1764086744.0, 1764086805.0, 1764086866.0], y=[1366.0, 429462.0, 368306.0] (must be same and length>=4)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,213 | INFO     | could have reported an average CPU frequency of 2083 MHz (4 samples)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | ..............................
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . Timing measurements:
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . get job = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . initial setup = 4 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . payload setup = 29 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . stage-in = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . payload execution = 193 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . stage-out = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . log creation = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | ..............................
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896713660/pilotlog.txt
[2025-11-25 08:11:57] 2025-11-25 16:10:54,298 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 08:11:57] - Log from pilotlog.txt -
[2025-11-25 08:11:57] 2025-11-25 16:10:54,202 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896713660/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,202 | INFO     | extracted standard info from prmon json
[2025-11-25 08:11:57] 2025-11-25 16:10:54,202 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 08:11:57] 2025-11-25 16:10:54,202 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 08:11:57] 2025-11-25 16:10:54,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 08:11:57] 2025-11-25 16:10:54,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 08:11:57] 2025-11-25 16:10:54,212 | WARNING  | wrong length of table data, x=[1764086744.0, 1764086805.0, 1764086866.0], y=[1366.0, 429462.0, 368306.0] (must be same and length>=4)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,213 | INFO     | could have reported an average CPU frequency of 2083 MHz (4 samples)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | ..............................
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . Timing measurements:
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . get job = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . initial setup = 4 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . payload setup = 29 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . stage-in = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . payload execution = 193 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . stage-out = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . log creation = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | ..............................
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896713660/pilotlog.txt
[2025-11-25 08:11:57] 2025-11-25 16:10:54,298 | WARNING  | 
[2025-11-25 08:11:57] [begin log extracts]
[2025-11-25 08:11:57] - Log from pilotlog.txt -
[2025-11-25 08:11:57] 2025-11-25 16:10:54,202 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896713660/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,202 | INFO     | extracted standard info from prmon json
[2025-11-25 08:11:57] 2025-11-25 16:10:54,202 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 08:11:57] 2025-11-25 16:10:54,202 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 08:11:57] 2025-11-25 16:10:54,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 08:11:57] 2025-11-25 16:10:54,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 08:11:57] 2025-11-25 16:10:54,212 | WARNING  | wrong length of table data, x=[1764086744.0, 1764086805.0, 1764086866.0], y=[1366.0, 429462.0, 368306.0] (must be same and length>=4)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,213 | INFO     | could have reported an average CPU frequency of 2083 MHz (4 samples)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | ..............................
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . Timing measurements:
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . get job = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . initial setup = 4 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . payload setup = 29 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . stage-in = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . payload execution = 193 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . stage-out = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | . log creation = 0 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | ..............................
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 08:11:57] 2025-11-25 16:10:54,214 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896713660/pilotlog.txt
[2025-11-25 08:11:57] [end log extracts]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,298 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,299 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 08:11:57] 2025-11-25 16:10:54,545 | INFO     | time since job start (424s) is within the limit (172800.0s)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | 
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | job summary report
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | --------------------------------------------------
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | PanDA job id: 6896713660
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | task id: 47556161
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 08:08:23,957 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | pilot state: failed 
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | transexitcode: 65
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | exeerrorcode: 65
[2025-11-25 08:11:57] 2025-11-25 16:10:54,569 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | exitcode: 65
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | cpuconsumptiontime: 56 s
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | nevents: 0
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | neventsw: 0
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | pid: 2423119
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | pgrp: 2423119
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | corecount: 12
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | event service: False
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | sizes: {0: 2284258, 11: 2284258, 21: 2284286, 25: 2284576, 32: 2284604, 226: 2310080, 227: 2310184, 228: 2314502, 231: 2314530, 369: 2314696}
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | --------------------------------------------------
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | 
[2025-11-25 08:11:57] 2025-11-25 16:10:54,570 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 08:11:57] 2025-11-25 16:10:54,727 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,727 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,727 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,727 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,727 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,727 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,727 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 08:11:57] 2025-11-25 16:10:54,728 | INFO     | job 6896713660 has completed (purged errors)
[2025-11-25 08:11:57] 2025-11-25 16:10:54,729 | INFO     | overall cleanup function is called
[2025-11-25 08:11:57] 2025-11-25 16:10:55,740 | INFO     | --- collectZombieJob: --- 10, [2423119]
[2025-11-25 08:11:57] 2025-11-25 16:10:55,741 | INFO     | zombie collector waiting for pid 2423119
[2025-11-25 08:11:57] 2025-11-25 16:10:55,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 08:11:57] 2025-11-25 16:10:55,741 | INFO     | collected zombie processes
[2025-11-25 08:11:57] 2025-11-25 16:10:55,741 | INFO     | will attempt to kill all subprocesses of pid=2423119
[2025-11-25 08:11:57] 2025-11-25 16:10:56,214 | INFO     | process IDs to be killed: [2423119] (in reverse order)
[2025-11-25 08:11:57] 2025-11-25 16:10:56,313 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 08:11:57] 2025-11-25 16:10:56,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 08:11:57] 2025-11-25 16:10:56,343 | INFO     | did not find any defunct processes belonging to 2423119
[2025-11-25 08:11:57] 2025-11-25 16:10:56,356 | INFO     | did not find any defunct processes belonging to 2423119
[2025-11-25 08:11:57] 2025-11-25 16:10:56,357 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 08:11:57] 2025-11-25 16:10:56,357 | INFO     | ready for new job
[2025-11-25 08:11:57] 2025-11-25 16:10:56,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 08:11:57] 2025-11-25 16:10:56,359 | INFO     | ***************************************
[2025-11-25 08:11:57] 2025-11-25 16:10:56,359 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 08:11:57] 2025-11-25 16:10:56,359 | INFO     | ***************************************
[2025-11-25 08:11:57] 2025-11-25 16:10:56,359 | INFO     | 
[2025-11-25 08:11:57] 2025-11-25 16:10:56,361 | INFO     | architecture information:
[2025-11-25 08:11:57] 2025-11-25 16:10:56,362 | INFO     | executing command: cat /etc/os-release
[2025-11-25 08:11:57] 2025-11-25 16:10:56,409 | INFO     | cat /etc/os-release:
[2025-11-25 08:11:57] NAME="CentOS Linux"
[2025-11-25 08:11:57] VERSION="7 (Core)"
[2025-11-25 08:11:57] ID="centos"
[2025-11-25 08:11:57] ID_LIKE="rhel fedora"
[2025-11-25 08:11:57] VERSION_ID="7"
[2025-11-25 08:11:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 08:11:57] ANSI_COLOR="0;31"
[2025-11-25 08:11:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 08:11:57] HOME_URL="https://www.centos.org/"
[2025-11-25 08:11:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 08:11:57] 
[2025-11-25 08:11:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 08:11:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 08:11:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 08:11:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 08:11:57] 
[2025-11-25 08:11:57] 2025-11-25 16:10:56,409 | INFO     | ***************************************
[2025-11-25 08:11:57] 2025-11-25 16:10:56,917 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 08:11:57] 2025-11-25 16:10:56,969 | INFO     | sufficient remaining disk space (1841422139392 B)
[2025-11-25 08:11:57] 2025-11-25 16:10:56,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 08:11:57] 2025-11-25 16:10:56,969 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:11:57] 2025-11-25 16:10:56,969 | INFO     | update_server=False
[2025-11-25 08:11:57] 2025-11-25 16:10:56,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:11:57] 2025-11-25 16:10:57,036 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:11:57] 2025-11-25 16:10:57,101 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:11:57] 2025-11-25 16:10:57,102 | INFO     | aborting loop
[2025-11-25 08:11:57] 2025-11-25 16:10:57,415 | INFO     | all job control threads have been joined
[2025-11-25 08:11:57] 2025-11-25 16:10:57,441 | INFO     | all payload control threads have been joined
[2025-11-25 08:11:57] 2025-11-25 16:10:57,952 | INFO     | all data control threads have been joined
[2025-11-25 08:11:57] 2025-11-25 16:10:57,986 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:58,091 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:58,112 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:58,121 | INFO     | [job] validate thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:58,421 | INFO     | [job] control thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:58,447 | INFO     | [payload] control thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:58,450 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:58,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:11:57] 2025-11-25 16:10:58,772 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:58,958 | INFO     | [data] control thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:59,043 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:59,046 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:59,212 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:59,214 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:59,216 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:10:59,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:11:57] 2025-11-25 16:11:00,596 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:11:02,728 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:11:57] 2025-11-25 16:11:27,991 | INFO     | PID=2416198 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 08:11:57] 2025-11-25 16:11:27,992 | INFO     | .. there are 28 such processes running
[2025-11-25 08:11:57] 2025-11-25 16:11:27,992 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:11:57] 2025-11-25 16:11:27,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:11:57] 2025-11-25 16:11:27,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:11:57] 2025-11-25 16:11:50,483 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:11:57] 2025-11-25 16:11:51,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102005835584)>', '<ExcThread(monitor, started 140101019494144)>']
[2025-11-25 08:11:57] 2025-11-25 16:11:52,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:11:57] 2025-11-25 16:11:52,150 | INFO     | [monitor] control thread has ended
[2025-11-25 08:11:57] 2025-11-25 16:11:56,517 | INFO     | all workflow threads have been joined
[2025-11-25 08:11:57] 2025-11-25 16:11:56,518 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:11:57] 2025-11-25 16:11:56,518 | INFO     | traces error code: 0
[2025-11-25 08:11:57] 2025-11-25 16:11:56,518 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:11:57] 2025-11-25 16:11:56,698 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:11:57] 2025-11-25 16:11:56,705 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:11:57] 2025-11-25 16:11:56,720 [wrapper] pilotpid: 2416198
[2025-11-25 08:11:57] 2025-11-25 16:11:56,737 [wrapper] Pilot exit status: 0
[2025-11-25 08:11:57] 2025-11-25 16:11:56,800 [wrapper] pandaids: 6896713660
[2025-11-25 08:11:57] 2025-11-25 16:11:56,860 [wrapper] cleanup supervisor_pilot 2416205 2416199
[2025-11-25 08:11:57] 2025-11-25 16:11:56,863 [wrapper] Test setup, not cleaning
[2025-11-25 08:11:57] 2025-11-25 16:11:56,867 [wrapper] apfmon messages muted
[2025-11-25 08:11:57] 2025-11-25 16:11:56,870 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:11:57] 2025-11-25 16:11:56,877 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:11:57]  *** Error codes and diagnostics ***
[2025-11-25 08:11:57]     "exeErrorCode": 65,
[2025-11-25 08:11:57]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 08:11:57]     "pilotErrorCode": 1305,
[2025-11-25 08:11:57]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 08:11:57]  *** Listing of results directory ***
[2025-11-25 08:11:57] total 405728
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc    576529 Nov 24 21:12 pilot3.tar.gz
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc      5112 Nov 24 21:30 queuedata.json
[2025-11-25 08:11:57] -rwx------. 1 boinc boinc     36292 Nov 24 21:31 runpilot2-wrapper.sh
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc       100 Nov 25 08:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:11:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 08:03 run_atlas
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc       105 Nov 25 08:03 job.xml
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc      6590 Nov 25 08:03 init_data.xml
[2025-11-25 08:11:57] -rw-r--r--. 2 boinc boinc 411208748 Nov 25 08:03 EVNT.47483658._002105.pool.root.1
[2025-11-25 08:11:57] -rw-r--r--. 2 boinc boinc     15847 Nov 25 08:03 start_atlas.sh
[2025-11-25 08:11:57] drwxrwx--x. 2 boinc boinc      4096 Nov 25 08:03 shared
[2025-11-25 08:11:57] -rw-r--r--. 2 boinc boinc    590104 Nov 25 08:03 input.tar.gz
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc         0 Nov 25 08:03 boinc_lockfile
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc      2783 Nov 25 08:03 pandaJob.out
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc    991909 Nov 25 08:03 agis_schedconf.cvmfs.json
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc   1516240 Nov 25 08:03 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:11:57] drwx------. 5 boinc boinc      4096 Nov 25 08:03 pilot3
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc       525 Nov 25 08:07 boinc_task_state.xml
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc       993 Nov 25 08:08 memory_monitor_summary.json
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc     51012 Nov 25 08:08 log.47556161._000886.job.log.tgz.1
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc        95 Nov 25 08:10 pilot_heartbeat.json
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc     10344 Nov 25 08:10 heartbeat.json
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc      8192 Nov 25 08:11 boinc_mmap_file
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc        23 Nov 25 08:11 wrapper_checkpoint.txt
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc      4823 Nov 25 08:11 pilotlog.txt
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc    117865 Nov 25 08:11 log.47556161._000886.job.log.1
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc       186 Nov 25 08:11 output.list
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc       620 Nov 25 08:11 runtime_log
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc    194560 Nov 25 08:11 result.tar.gz
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc      8636 Nov 25 08:11 runtime_log.err
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc       645 Nov 25 08:11 bFNLDmbp0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyAMKDm2tB9fn.diag
[2025-11-25 08:11:57] -rw-r--r--. 1 boinc boinc     22606 Nov 25 08:11 stderr.txt
[2025-11-25 08:11:57] No HITS result produced
[2025-11-25 08:11:57]  *** Contents of shared directory: ***
[2025-11-25 08:11:57] total 402364
[2025-11-25 08:11:57] -rw-r--r--. 2 boinc boinc 411208748 Nov 25 08:03 ATLAS.root_0
[2025-11-25 08:11:57] -rw-r--r--. 2 boinc boinc     15847 Nov 25 08:03 start_atlas.sh
[2025-11-25 08:11:57] -rw-r--r--. 2 boinc boinc    590104 Nov 25 08:03 input.tar.gz
[2025-11-25 08:11:57] -rw-------. 1 boinc boinc    194560 Nov 25 08:11 result.tar.gz
08:11:59 (2412392): run_atlas exited; CPU time 63.365832
08:11:59 (2412392): called boinc_finish(0)

</stderr_txt>
]]>

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