Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:05:14 (28113): wrapper (7.7.26015): starting
11:05:14 (28113): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 11:05:14] Arguments: --nthreads 12
[2025-11-25 11:05:14] Threads: 12
[2025-11-25 11:05:14] Checking for CVMFS
[2025-11-25 11:05:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:05:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:05:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:05:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:05:14] 2.11.2.0 2910 37678 92560 153287 1 82 14309598 20275201 1 130560 0 5556198 99.843 1695319 27229 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 11:05:14] CVMFS is ok
[2025-11-25 11:05:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:05:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:05:14] Further information can be found at the LHC@home message board.
[2025-11-25 11:05:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:05:14] Checking for apptainer binary...
[2025-11-25 11:05:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:05:14] Running /usr/bin/apptainer --version
[2025-11-25 11:05:14] apptainer version 1.3.2-1.el7
[2025-11-25 11:05:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:05:15] c-205-11.aglt2.org
[2025-11-25 11:05:15] apptainer works
[2025-11-25 11:05:15] Set ATHENA_PROC_NUMBER=12
[2025-11-25 11:05:15] Set ATHENA_CORE_NUMBER=12
[2025-11-25 11:05:15] Starting ATLAS job with PandaID=6895939046
[2025-11-25 11:05:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:08:18]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:08:18] 2025-11-25 23:07:28,554 | INFO     | time since job start (25318s) is within the limit (172800.0s)
[2025-11-25 18:08:18] 2025-11-25 23:07:29,618 | INFO     | monitor loop #1886: job 0:6895939046 is in state 'finished'
[2025-11-25 18:08:18] 2025-11-25 23:07:29,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:08:18] 2025-11-25 23:07:30,560 | INFO     | time since job start (25320s) is within the limit (172800.0s)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,203 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 18:08:18] 2025-11-25 23:07:31,207 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-11-25 18:08:18] 2025-11-25 23:07:31,209 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895939046/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,209 | INFO     | extracted standard info from prmon json
[2025-11-25 18:08:18] 2025-11-25 23:07:31,209 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 18:08:18] 2025-11-25 23:07:31,210 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 18:08:18] 2025-11-25 23:07:31,216 | INFO     | fitting pss+swap vs Time
[2025-11-25 18:08:18] 2025-11-25 23:07:31,216 | INFO     | sum of square deviations: 22162555339.773582
[2025-11-25 18:08:18] 2025-11-25 23:07:31,220 | INFO     | sum of deviations: 338121280899.3812
[2025-11-25 18:08:18] 2025-11-25 23:07:31,220 | INFO     | mean x: 1764099387.2698796
[2025-11-25 18:08:18] 2025-11-25 23:07:31,220 | INFO     | mean y: 4023928.014457831
[2025-11-25 18:08:18] 2025-11-25 23:07:31,220 | INFO     | intersect: -26909819503.525467
[2025-11-25 18:08:18] 2025-11-25 23:07:31,221 | INFO     | chi2: 6.807994778425783
[2025-11-25 18:08:18] 2025-11-25 23:07:31,221 | INFO     | sum of square deviations: 21371142101.90484
[2025-11-25 18:08:18] 2025-11-25 23:07:31,225 | INFO     | sum of deviations: 548446498276.3072
[2025-11-25 18:08:18] 2025-11-25 23:07:31,225 | INFO     | mean x: 1764099234.7731707
[2025-11-25 18:08:18] 2025-11-25 23:07:31,225 | INFO     | mean y: 4064424.8097560974
[2025-11-25 18:08:18] 2025-11-25 23:07:31,225 | INFO     | intersect: -45267921663.24413
[2025-11-25 18:08:18] 2025-11-25 23:07:31,226 | INFO     | chi2: 3.0775163525181104
[2025-11-25 18:08:18] 2025-11-25 23:07:31,226 | INFO     | current chi2=3.0775163525181104 (change=54.795553570772185 %)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,226 | INFO     | sum of square deviations: 20598798989.0273
[2025-11-25 18:08:18] 2025-11-25 23:07:31,230 | INFO     | sum of deviations: 616044219323.7532
[2025-11-25 18:08:18] 2025-11-25 23:07:31,230 | INFO     | mean x: 1764099082.2765431
[2025-11-25 18:08:18] 2025-11-25 23:07:31,230 | INFO     | mean y: 4077720.3950617285
[2025-11-25 18:08:18] 2025-11-25 23:07:31,230 | INFO     | intersect: -52754485656.51376
[2025-11-25 18:08:18] 2025-11-25 23:07:31,231 | INFO     | chi2: 2.466881759020836
[2025-11-25 18:08:18] 2025-11-25 23:07:31,231 | INFO     | current chi2=2.466881759020836 (change=19.84179850084748 %)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,231 | INFO     | right removable region: 404
[2025-11-25 18:08:18] 2025-11-25 23:07:31,231 | INFO     | sum of square deviations: 21371073781.904858
[2025-11-25 18:08:18] 2025-11-25 23:07:31,235 | INFO     | sum of deviations: 185234426348.15097
[2025-11-25 18:08:18] 2025-11-25 23:07:31,235 | INFO     | mean x: 1764099539.7731707
[2025-11-25 18:08:18] 2025-11-25 23:07:31,235 | INFO     | mean y: 4053277.668292683
[2025-11-25 18:08:18] 2025-11-25 23:07:31,235 | INFO     | intersect: -15286332671.380377
[2025-11-25 18:08:18] 2025-11-25 23:07:31,236 | INFO     | chi2: 4.532050386146646
[2025-11-25 18:08:18] 2025-11-25 23:07:31,236 | INFO     | current chi2=4.532050386146646 (change=33.430466185013806 %)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,236 | INFO     | sum of square deviations: 20598662349.027294
[2025-11-25 18:08:18] 2025-11-25 23:07:31,240 | INFO     | sum of deviations: 148399078744.63235
[2025-11-25 18:08:18] 2025-11-25 23:07:31,240 | INFO     | mean x: 1764099692.2765431
[2025-11-25 18:08:18] 2025-11-25 23:07:31,240 | INFO     | mean y: 4060546.708641975
[2025-11-25 18:08:18] 2025-11-25 23:07:31,240 | INFO     | intersect: -12705054477.932299
[2025-11-25 18:08:18] 2025-11-25 23:07:31,241 | INFO     | chi2: 4.476595249722221
[2025-11-25 18:08:18] 2025-11-25 23:07:31,241 | INFO     | current chi2=4.476595249722221 (change=1.2236213567690575 %)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,241 | INFO     | left removable region: 20
[2025-11-25 18:08:18] 2025-11-25 23:07:31,241 | INFO     | sum of square deviations: 17557753968.184883
[2025-11-25 18:08:18] 2025-11-25 23:07:31,244 | INFO     | sum of deviations: 365874419854.7631
[2025-11-25 18:08:18] 2025-11-25 23:07:31,245 | INFO     | mean x: 1764099661.7786458
[2025-11-25 18:08:18] 2025-11-25 23:07:31,245 | INFO     | mean y: 4128290.0442708335
[2025-11-25 18:08:18] 2025-11-25 23:07:31,245 | INFO     | intersect: -36756777546.13491
[2025-11-25 18:08:18] 2025-11-25 23:07:31,245 | INFO     | chi2: 0.04302432519746803
[2025-11-25 18:08:18] 2025-11-25 23:07:31,245 | INFO     | current memory leak: 20.84 B/s (using 384 data points, chi2=0.04)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,246 | INFO     | could have reported an average CPU frequency of 2435 MHz (17 samples)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,246 | INFO     | ..............................
[2025-11-25 18:08:18] 2025-11-25 23:07:31,246 | INFO     | . Timing measurements:
[2025-11-25 18:08:18] 2025-11-25 23:07:31,246 | INFO     | . get job = 0 s
[2025-11-25 18:08:18] 2025-11-25 23:07:31,246 | INFO     | . initial setup = 2 s
[2025-11-25 18:08:18] 2025-11-25 23:07:31,246 | INFO     | . payload setup = 7 s
[2025-11-25 18:08:18] 2025-11-25 23:07:31,247 | INFO     | . stage-in = 0 s
[2025-11-25 18:08:18] 2025-11-25 23:07:31,247 | INFO     | . payload execution = 25285 s
[2025-11-25 18:08:18] 2025-11-25 23:07:31,247 | INFO     | . stage-out = 3 s
[2025-11-25 18:08:18] 2025-11-25 23:07:31,247 | INFO     | . log creation = 0 s
[2025-11-25 18:08:18] 2025-11-25 23:07:31,247 | INFO     | ..............................
[2025-11-25 18:08:18] 2025-11-25 23:07:31,326 | INFO     | 
[2025-11-25 18:08:18] 2025-11-25 23:07:31,327 | INFO     | job summary report
[2025-11-25 18:08:18] 2025-11-25 23:07:31,327 | INFO     | --------------------------------------------------
[2025-11-25 18:08:18] 2025-11-25 23:07:31,327 | INFO     | PanDA job id: 6895939046
[2025-11-25 18:08:18] 2025-11-25 23:07:31,327 | INFO     | task id: 47556149
[2025-11-25 18:08:18] 2025-11-25 23:07:31,327 | INFO     | errors: (none)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,327 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 18:08:18] 2025-11-25 23:07:31,328 | INFO     | pilot state: finished 
[2025-11-25 18:08:18] 2025-11-25 23:07:31,328 | INFO     | transexitcode: 0
[2025-11-25 18:08:18] 2025-11-25 23:07:31,328 | INFO     | exeerrorcode: 0
[2025-11-25 18:08:18] 2025-11-25 23:07:31,328 | INFO     | exeerrordiag: 
[2025-11-25 18:08:18] 2025-11-25 23:07:31,328 | INFO     | exitcode: 0
[2025-11-25 18:08:18] 2025-11-25 23:07:31,328 | INFO     | exitmsg: OK
[2025-11-25 18:08:18] 2025-11-25 23:07:31,329 | INFO     | cpuconsumptiontime: 292644 s
[2025-11-25 18:08:18] 2025-11-25 23:07:31,329 | INFO     | nevents: 1000
[2025-11-25 18:08:18] 2025-11-25 23:07:31,329 | INFO     | neventsw: 0
[2025-11-25 18:08:18] 2025-11-25 23:07:31,329 | INFO     | pid: 5914
[2025-11-25 18:08:18] 2025-11-25 23:07:31,329 | INFO     | pgrp: 5914
[2025-11-25 18:08:18] 2025-11-25 23:07:31,329 | INFO     | corecount: 12
[2025-11-25 18:08:18] 2025-11-25 23:07:31,330 | INFO     | event service: False
[2025-11-25 18:08:18] 2025-11-25 23:07:31,330 | INFO     | sizes: {0: 2284087, 1: 2284342, 6: 2284604, 12: 2284632, 25294: 2321584, 25297: 2330578, 25299: 2330762, 25305: 2331072}
[2025-11-25 18:08:18] 2025-11-25 23:07:31,330 | INFO     | --------------------------------------------------
[2025-11-25 18:08:18] 2025-11-25 23:07:31,330 | INFO     | 
[2025-11-25 18:08:18] 2025-11-25 23:07:31,330 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 18:08:18] 2025-11-25 23:07:31,391 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,392 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,392 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,392 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,392 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,392 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,394 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,394 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,395 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 18:08:18] 2025-11-25 23:07:31,395 | INFO     | job 6895939046 has completed (purged errors)
[2025-11-25 18:08:18] 2025-11-25 23:07:31,395 | INFO     | overall cleanup function is called
[2025-11-25 18:08:18] 2025-11-25 23:07:32,412 | INFO     | --- collectZombieJob: --- 10, [5914]
[2025-11-25 18:08:18] 2025-11-25 23:07:32,412 | INFO     | zombie collector waiting for pid 5914
[2025-11-25 18:08:18] 2025-11-25 23:07:32,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 18:08:18] 2025-11-25 23:07:32,413 | INFO     | collected zombie processes
[2025-11-25 18:08:18] 2025-11-25 23:07:32,413 | INFO     | will attempt to kill all subprocesses of pid=5914
[2025-11-25 18:08:18] 2025-11-25 23:07:32,503 | INFO     | process IDs to be killed: [5914] (in reverse order)
[2025-11-25 18:08:18] 2025-11-25 23:07:32,554 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 18:08:18] 2025-11-25 23:07:32,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 18:08:18] 2025-11-25 23:07:32,558 | INFO     | did not find any defunct processes belonging to 5914
[2025-11-25 18:08:18] 2025-11-25 23:07:32,561 | INFO     | did not find any defunct processes belonging to 5914
[2025-11-25 18:08:18] 2025-11-25 23:07:32,563 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 18:08:18] 2025-11-25 23:07:32,563 | INFO     | ready for new job
[2025-11-25 18:08:18] 2025-11-25 23:07:32,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 18:08:18] 2025-11-25 23:07:32,566 | INFO     | ***************************************
[2025-11-25 18:08:18] 2025-11-25 23:07:32,566 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 18:08:18] 2025-11-25 23:07:32,566 | INFO     | ***************************************
[2025-11-25 18:08:18] 2025-11-25 23:07:32,566 | INFO     | 
[2025-11-25 18:08:18] 2025-11-25 23:07:32,567 | INFO     | architecture information:
[2025-11-25 18:08:18] 2025-11-25 23:07:32,568 | INFO     | executing command: cat /etc/os-release
[2025-11-25 18:08:18] 2025-11-25 23:07:32,584 | INFO     | cat /etc/os-release:
[2025-11-25 18:08:18] NAME="CentOS Linux"
[2025-11-25 18:08:18] VERSION="7 (Core)"
[2025-11-25 18:08:18] ID="centos"
[2025-11-25 18:08:18] ID_LIKE="rhel fedora"
[2025-11-25 18:08:18] VERSION_ID="7"
[2025-11-25 18:08:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 18:08:18] ANSI_COLOR="0;31"
[2025-11-25 18:08:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 18:08:18] HOME_URL="https://www.centos.org/"
[2025-11-25 18:08:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 18:08:18] 
[2025-11-25 18:08:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 18:08:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 18:08:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 18:08:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 18:08:18] 
[2025-11-25 18:08:18] 2025-11-25 23:07:32,584 | INFO     | ***************************************
[2025-11-25 18:08:18] 2025-11-25 23:07:33,085 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 18:08:18] 2025-11-25 23:07:33,103 | INFO     | sufficient remaining disk space (28270657536 B)
[2025-11-25 18:08:18] 2025-11-25 23:07:33,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 18:08:18] 2025-11-25 23:07:33,103 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:08:18] 2025-11-25 23:07:33,104 | INFO     | update_server=False
[2025-11-25 18:08:18] 2025-11-25 23:07:33,104 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:08:18] 2025-11-25 23:07:33,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:08:18] 2025-11-25 23:07:33,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:08:18] 2025-11-25 23:07:33,120 | INFO     | aborting loop
[2025-11-25 18:08:18] 2025-11-25 23:07:33,267 | INFO     | all data control threads have been joined
[2025-11-25 18:08:18] 2025-11-25 23:07:33,314 | INFO     | all job control threads have been joined
[2025-11-25 18:08:18] 2025-11-25 23:07:34,070 | INFO     | all payload control threads have been joined
[2025-11-25 18:08:18] 2025-11-25 23:07:34,109 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,110 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,125 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,200 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,253 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,269 | INFO     | [data] control thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,310 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,319 | INFO     | [job] control thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,334 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,400 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:08:18] 2025-11-25 23:07:34,684 | INFO     | [job] validate thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,832 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:34,928 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:35,076 | INFO     | [payload] control thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:35,218 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:35,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:08:18] 2025-11-25 23:07:36,405 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:07:39,861 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:08:18] 2025-11-25 23:08:03,753 | INFO     | PID=31794 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 18:08:18] 2025-11-25 23:08:03,754 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:08:18] 2025-11-25 23:08:03,754 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:08:18] 2025-11-25 23:08:03,754 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:08:18] 2025-11-25 23:08:12,129 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:08:18] 2025-11-25 23:08:13,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635848783680)>', '<ExcThread(monitor, started 139634730321664)>']
[2025-11-25 18:08:18] 2025-11-25 23:08:13,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:08:18] 2025-11-25 23:08:13,805 | INFO     | [monitor] control thread has ended
[2025-11-25 18:08:18] 2025-11-25 23:08:18,134 | INFO     | all workflow threads have been joined
[2025-11-25 18:08:18] 2025-11-25 23:08:18,134 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:08:18] 2025-11-25 23:08:18,135 | INFO     | traces error code: 0
[2025-11-25 18:08:18] 2025-11-25 23:08:18,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:08:18] 2025-11-25 23:08:18,230 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:08:18] 2025-11-25 23:08:18,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:08:18] 2025-11-25 23:08:18,238 [wrapper] pilotpid: 31794
[2025-11-25 18:08:18] 2025-11-25 23:08:18,241 [wrapper] Pilot exit status: 0
[2025-11-25 18:08:18] 2025-11-25 23:08:18,257 [wrapper] pandaids: 6895939046
[2025-11-25 18:08:18] 2025-11-25 23:08:18,305 [wrapper] cleanup supervisor_pilot 22304 31795
[2025-11-25 18:08:18] 2025-11-25 23:08:18,310 [wrapper] Test setup, not cleaning
[2025-11-25 18:08:18] 2025-11-25 23:08:18,313 [wrapper] apfmon messages muted
[2025-11-25 18:08:18] 2025-11-25 23:08:18,317 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:08:18] 2025-11-25 23:08:18,321 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:08:18]  *** Error codes and diagnostics ***
[2025-11-25 18:08:18]     "exeErrorCode": 0,
[2025-11-25 18:08:18]     "exeErrorDiag": "",
[2025-11-25 18:08:18]     "pilotErrorCode": 0,
[2025-11-25 18:08:18]     "pilotErrorDiag": "",
[2025-11-25 18:08:18]  *** Listing of results directory ***
[2025-11-25 18:08:18] total 1324424
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 12:23 queuedata.json
[2025-11-25 18:08:18] -rwx------ 1 boincer umatlas     36292 Nov 24 12:23 runpilot2-wrapper.sh
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas       100 Nov 25 11:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:08:18] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 11:05 run_atlas
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas       105 Nov 25 11:05 job.xml
[2025-11-25 18:08:18] -rw-r--r-- 2 boincer umatlas 410785191 Nov 25 11:05 EVNT.47483658._001406.pool.root.1
[2025-11-25 18:08:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 11:05 start_atlas.sh
[2025-11-25 18:08:18] drwxrwx--x 2 boincer umatlas      4096 Nov 25 11:05 shared
[2025-11-25 18:08:18] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 11:05 input.tar.gz
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas         0 Nov 25 11:05 boinc_lockfile
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 11:05 pandaJob.out
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas    991909 Nov 25 11:05 agis_schedconf.cvmfs.json
[2025-11-25 18:08:18] drwx------ 5 boincer umatlas      4096 Nov 25 11:05 pilot3
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas       532 Nov 25 17:57 boinc_task_state.xml
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas      5871 Nov 25 18:02 init_data.xml
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas 930071145 Nov 25 18:06 HITS.47556149._003925.pool.root.1
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas      1063 Nov 25 18:07 memory_monitor_summary.json
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas   1516240 Nov 25 18:07 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas   2175035 Nov 25 18:07 log.47556149._003925.job.log.tgz.1
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas      8662 Nov 25 18:07 heartbeat.json
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas        95 Nov 25 18:08 pilot_heartbeat.json
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas        29 Nov 25 18:08 wrapper_checkpoint.txt
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 18:08 boinc_mmap_file
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas      4746 Nov 25 18:08 pilotlog.txt
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas   3541385 Nov 25 18:08 log.47556149._003925.job.log.1
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas       353 Nov 25 18:08 output.list
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas       620 Nov 25 18:08 runtime_log
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas   5734400 Nov 25 18:08 result.tar.gz
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas       669 Nov 25 18:08 Fl2LDmBTph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVoLKDmOmkv9n.diag
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas      8820 Nov 25 18:08 runtime_log.err
[2025-11-25 18:08:18] -rw-r--r-- 1 boincer umatlas     21325 Nov 25 18:08 stderr.txt
[2025-11-25 18:08:18] HITS file was successfully produced:
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas 930071145 Nov 25 18:06 shared/HITS.pool.root.1
[2025-11-25 18:08:18]  *** Contents of shared directory: ***
[2025-11-25 18:08:18] total 1315640
[2025-11-25 18:08:18] -rw-r--r-- 2 boincer umatlas 410785191 Nov 25 11:05 ATLAS.root_0
[2025-11-25 18:08:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 11:05 start_atlas.sh
[2025-11-25 18:08:18] -rw-r--r-- 2 boincer umatlas    590102 Nov 25 11:05 input.tar.gz
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas 930071145 Nov 25 18:06 HITS.pool.root.1
[2025-11-25 18:08:18] -rw------- 1 boincer umatlas   5734400 Nov 25 18:08 result.tar.gz
18:08:20 (28113): run_atlas exited; CPU time 289348.630631
18:08:20 (28113): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN