Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:58:15 (20248): wrapper (7.7.26015): starting
10:58:15 (20248): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 10:58:15] Arguments: --nthreads 8
[2025-11-25 10:58:15] Threads: 8
[2025-11-25 10:58:15] Checking for CVMFS
[2025-11-25 10:58:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:58:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:58:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:58:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:58:16] 2.11.2.0 3869 102163 135360 153287 2 82 11868034 18432000 1885 130560 0 76550537 99.984 3831572 30262 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 10:58:16] CVMFS is ok
[2025-11-25 10:58:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:58:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:58:16] Further information can be found at the LHC@home message board.
[2025-11-25 10:58:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:58:16] Checking for apptainer binary...
[2025-11-25 10:58:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:58:16] Running /usr/bin/apptainer --version
[2025-11-25 10:58:16] apptainer version 1.3.2-1.el7
[2025-11-25 10:58:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:58:16] c-206-12.aglt2.org
[2025-11-25 10:58:16] apptainer works
[2025-11-25 10:58:16] Set ATHENA_PROC_NUMBER=8
[2025-11-25 10:58:16] Set ATHENA_CORE_NUMBER=8
[2025-11-25 10:58:16] Starting ATLAS job with PandaID=6895356907
[2025-11-25 10:58:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:27:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:27:32] 2025-11-26 11:26:45,494 | INFO     | monitor loop #5019: job 0:6895356907 is in state 'finished'
[2025-11-26 06:27:32] 2025-11-26 11:26:45,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:27:32] 2025-11-26 11:26:46,821 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 06:27:32] 2025-11-26 11:26:46,824 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2472.375
[2025-11-26 06:27:32] 2025-11-26 11:26:46,827 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895356907/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:27:32] 2025-11-26 11:26:46,827 | INFO     | extracted standard info from prmon json
[2025-11-26 06:27:32] 2025-11-26 11:26:46,828 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:27:32] 2025-11-26 11:26:46,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:27:32] 2025-11-26 11:26:46,843 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:27:32] 2025-11-26 11:26:46,844 | INFO     | sum of square deviations: 470369671208.0383
[2025-11-26 06:27:32] 2025-11-26 11:26:46,868 | INFO     | sum of deviations: 2104146711884.4182
[2025-11-26 06:27:32] 2025-11-26 11:26:46,869 | INFO     | mean x: 1764121350.5987816
[2025-11-26 06:27:32] 2025-11-26 11:26:46,869 | INFO     | mean y: 3079169.5865970408
[2025-11-26 06:27:32] 2025-11-26 11:26:46,869 | INFO     | intersect: -7888522620.329337
[2025-11-26 06:27:32] 2025-11-26 11:26:46,870 | INFO     | chi2: 6.337578480305803
[2025-11-26 06:27:32] 2025-11-26 11:26:46,871 | INFO     | sum of square deviations: 464255980366.23755
[2025-11-26 06:27:32] 2025-11-26 11:26:46,904 | INFO     | sum of deviations: 2488447260390.749
[2025-11-26 06:27:32] 2025-11-26 11:26:46,905 | INFO     | mean x: 1764121198.1013987
[2025-11-26 06:27:32] 2025-11-26 11:26:46,905 | INFO     | mean y: 3088750.7176573426
[2025-11-26 06:27:32] 2025-11-26 11:26:46,905 | INFO     | intersect: -9452734648.583725
[2025-11-26 06:27:32] 2025-11-26 11:26:46,907 | INFO     | chi2: 3.517112006124528
[2025-11-26 06:27:32] 2025-11-26 11:26:46,907 | INFO     | current chi2=3.517112006124528 (change=44.50385084691181 %)
[2025-11-26 06:27:32] 2025-11-26 11:26:46,909 | INFO     | sum of square deviations: 458195499824.42163
[2025-11-26 06:27:32] 2025-11-26 11:26:46,951 | INFO     | sum of deviations: 2688960168996.7876
[2025-11-26 06:27:32] 2025-11-26 11:26:46,951 | INFO     | mean x: 1764121045.6040387
[2025-11-26 06:27:32] 2025-11-26 11:26:46,951 | INFO     | mean y: 3093794.2212467077
[2025-11-26 06:27:32] 2025-11-26 11:26:46,951 | INFO     | intersect: -10349804099.223736
[2025-11-26 06:27:32] 2025-11-26 11:26:46,953 | INFO     | chi2: 2.655618035399366
[2025-11-26 06:27:32] 2025-11-26 11:26:46,953 | INFO     | current chi2=2.655618035399366 (change=24.494356995881795 %)
[2025-11-26 06:27:32] 2025-11-26 11:26:46,953 | INFO     | right removable region: 1138
[2025-11-26 06:27:32] 2025-11-26 11:26:46,955 | INFO     | sum of square deviations: 464255560686.2376
[2025-11-26 06:27:32] 2025-11-26 11:26:46,997 | INFO     | sum of deviations: 1774996895143.1514
[2025-11-26 06:27:32] 2025-11-26 11:26:46,997 | INFO     | mean x: 1764121503.1013987
[2025-11-26 06:27:32] 2025-11-26 11:26:46,997 | INFO     | mean y: 3087370.5935314684
[2025-11-26 06:27:32] 2025-11-26 11:26:46,998 | INFO     | intersect: -6741711089.185211
[2025-11-26 06:27:32] 2025-11-26 11:26:46,999 | INFO     | chi2: 4.201931692530324
[2025-11-26 06:27:32] 2025-11-26 11:26:46,999 | INFO     | current chi2=4.201931692530324 (change=33.69815134300994 %)
[2025-11-26 06:27:32] 2025-11-26 11:26:47,001 | INFO     | sum of square deviations: 458194869451.0376
[2025-11-26 06:27:32] 2025-11-26 11:26:47,026 | INFO     | sum of deviations: 1688903313601.7583
[2025-11-26 06:27:32] 2025-11-26 11:26:47,026 | INFO     | mean x: 1764121655.6014047
[2025-11-26 06:27:32] 2025-11-26 11:26:47,026 | INFO     | mean y: 3089536.525899912
[2025-11-26 06:27:32] 2025-11-26 11:26:47,027 | INFO     | intersect: -6499451431.057353
[2025-11-26 06:27:32] 2025-11-26 11:26:47,027 | INFO     | chi2: 4.1340613943328375
[2025-11-26 06:27:32] 2025-11-26 11:26:47,028 | INFO     | current chi2=4.1340613943328375 (change=1.6152165995020291 %)
[2025-11-26 06:27:32] 2025-11-26 11:26:47,028 | INFO     | left removable region: 20
[2025-11-26 06:27:32] 2025-11-26 11:26:47,029 | INFO     | sum of square deviations: 433316094138.6869
[2025-11-26 06:27:32] 2025-11-26 11:26:47,056 | INFO     | sum of deviations: 2173339303355.6152
[2025-11-26 06:27:32] 2025-11-26 11:26:47,056 | INFO     | mean x: 1764121625.1091235
[2025-11-26 06:27:32] 2025-11-26 11:26:47,056 | INFO     | mean y: 3108213.076923077
[2025-11-26 06:27:32] 2025-11-26 11:26:47,056 | INFO     | intersect: -8845016552.217669
[2025-11-26 06:27:32] 2025-11-26 11:26:47,058 | INFO     | chi2: 0.32206537518114986
[2025-11-26 06:27:32] 2025-11-26 11:26:47,058 | INFO     | current memory leak: 5.02 B/s (using 1118 data points, chi2=0.32)
[2025-11-26 06:27:32] 2025-11-26 11:26:47,059 | INFO     | could have reported an average CPU frequency of 2631 MHz (42 samples)
[2025-11-26 06:27:32] 2025-11-26 11:26:47,060 | INFO     | ..............................
[2025-11-26 06:27:32] 2025-11-26 11:26:47,060 | INFO     | . Timing measurements:
[2025-11-26 06:27:32] 2025-11-26 11:26:47,060 | INFO     | . get job = 0 s
[2025-11-26 06:27:32] 2025-11-26 11:26:47,060 | INFO     | . initial setup = 4 s
[2025-11-26 06:27:32] 2025-11-26 11:26:47,060 | INFO     | . payload setup = 5 s
[2025-11-26 06:27:32] 2025-11-26 11:26:47,061 | INFO     | . stage-in = 0 s
[2025-11-26 06:27:32] 2025-11-26 11:26:47,061 | INFO     | . payload execution = 70061 s
[2025-11-26 06:27:32] 2025-11-26 11:26:47,061 | INFO     | . stage-out = 4 s
[2025-11-26 06:27:32] 2025-11-26 11:26:47,061 | INFO     | . log creation = 0 s
[2025-11-26 06:27:32] 2025-11-26 11:26:47,061 | INFO     | ..............................
[2025-11-26 06:27:32] 2025-11-26 11:26:47,212 | INFO     | 
[2025-11-26 06:27:32] 2025-11-26 11:26:47,212 | INFO     | job summary report
[2025-11-26 06:27:32] 2025-11-26 11:26:47,213 | INFO     | --------------------------------------------------
[2025-11-26 06:27:32] 2025-11-26 11:26:47,213 | INFO     | PanDA job id: 6895356907
[2025-11-26 06:27:32] 2025-11-26 11:26:47,213 | INFO     | task id: 47556137
[2025-11-26 06:27:32] 2025-11-26 11:26:47,213 | INFO     | errors: (none)
[2025-11-26 06:27:32] 2025-11-26 11:26:47,213 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:27:32] 2025-11-26 11:26:47,213 | INFO     | pilot state: finished 
[2025-11-26 06:27:32] 2025-11-26 11:26:47,214 | INFO     | transexitcode: 0
[2025-11-26 06:27:32] 2025-11-26 11:26:47,214 | INFO     | exeerrorcode: 0
[2025-11-26 06:27:32] 2025-11-26 11:26:47,214 | INFO     | exeerrordiag: 
[2025-11-26 06:27:32] 2025-11-26 11:26:47,214 | INFO     | exitcode: 0
[2025-11-26 06:27:32] 2025-11-26 11:26:47,214 | INFO     | exitmsg: OK
[2025-11-26 06:27:32] 2025-11-26 11:26:47,214 | INFO     | cpuconsumptiontime: 539459 s
[2025-11-26 06:27:32] 2025-11-26 11:26:47,215 | INFO     | nevents: 1000
[2025-11-26 06:27:32] 2025-11-26 11:26:47,215 | INFO     | neventsw: 0
[2025-11-26 06:27:32] 2025-11-26 11:26:47,215 | INFO     | pid: 30359
[2025-11-26 06:27:32] 2025-11-26 11:26:47,215 | INFO     | pgrp: 30359
[2025-11-26 06:27:32] 2025-11-26 11:26:47,215 | INFO     | corecount: 8
[2025-11-26 06:27:32] 2025-11-26 11:26:47,215 | INFO     | event service: False
[2025-11-26 06:27:32] 2025-11-26 11:26:47,216 | INFO     | sizes: {0: 2284144, 1: 2284343, 4: 2284605, 12: 2284633, 70069: 2341291, 70074: 2350285, 70075: 2350469, 70081: 2350715}
[2025-11-26 06:27:32] 2025-11-26 11:26:47,216 | INFO     | --------------------------------------------------
[2025-11-26 06:27:32] 2025-11-26 11:26:47,216 | INFO     | 
[2025-11-26 06:27:32] 2025-11-26 11:26:47,216 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 06:27:32] 2025-11-26 11:26:47,234 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,234 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,235 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,235 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,235 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,235 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,236 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,236 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,236 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,236 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,236 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,237 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,237 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,237 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,237 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,237 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:27:32] 2025-11-26 11:26:47,237 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,238 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:27:32] 2025-11-26 11:26:47,238 | INFO     | job 6895356907 has completed (purged errors)
[2025-11-26 06:27:32] 2025-11-26 11:26:47,238 | INFO     | overall cleanup function is called
[2025-11-26 06:27:32] 2025-11-26 11:26:48,255 | INFO     | --- collectZombieJob: --- 10, [30359]
[2025-11-26 06:27:32] 2025-11-26 11:26:48,256 | INFO     | zombie collector waiting for pid 30359
[2025-11-26 06:27:32] 2025-11-26 11:26:48,256 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:27:32] 2025-11-26 11:26:48,256 | INFO     | collected zombie processes
[2025-11-26 06:27:32] 2025-11-26 11:26:48,256 | INFO     | will attempt to kill all subprocesses of pid=30359
[2025-11-26 06:27:32] 2025-11-26 11:26:48,423 | INFO     | process IDs to be killed: [30359] (in reverse order)
[2025-11-26 06:27:32] 2025-11-26 11:26:48,495 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:27:32] 2025-11-26 11:26:48,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:27:32] 2025-11-26 11:26:48,501 | INFO     | did not find any defunct processes belonging to 30359
[2025-11-26 06:27:32] 2025-11-26 11:26:48,506 | INFO     | did not find any defunct processes belonging to 30359
[2025-11-26 06:27:32] 2025-11-26 11:26:48,508 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:27:32] 2025-11-26 11:26:48,509 | INFO     | ready for new job
[2025-11-26 06:27:32] 2025-11-26 11:26:48,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:27:32] 2025-11-26 11:26:48,514 | INFO     | ***************************************
[2025-11-26 06:27:32] 2025-11-26 11:26:48,514 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:27:32] 2025-11-26 11:26:48,514 | INFO     | ***************************************
[2025-11-26 06:27:32] 2025-11-26 11:26:48,515 | INFO     | 
[2025-11-26 06:27:32] 2025-11-26 11:26:48,516 | INFO     | architecture information:
[2025-11-26 06:27:32] 2025-11-26 11:26:48,516 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:27:32] 2025-11-26 11:26:48,536 | INFO     | cat /etc/os-release:
[2025-11-26 06:27:32] NAME="CentOS Linux"
[2025-11-26 06:27:32] VERSION="7 (Core)"
[2025-11-26 06:27:32] ID="centos"
[2025-11-26 06:27:32] ID_LIKE="rhel fedora"
[2025-11-26 06:27:32] VERSION_ID="7"
[2025-11-26 06:27:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:27:32] ANSI_COLOR="0;31"
[2025-11-26 06:27:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:27:32] HOME_URL="https://www.centos.org/"
[2025-11-26 06:27:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:27:32] 
[2025-11-26 06:27:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:27:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:27:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:27:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:27:32] 
[2025-11-26 06:27:32] 2025-11-26 11:26:48,536 | INFO     | ***************************************
[2025-11-26 06:27:32] 2025-11-26 11:26:49,039 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 06:27:32] 2025-11-26 11:26:49,073 | INFO     | sufficient remaining disk space (25099763712 B)
[2025-11-26 06:27:32] 2025-11-26 11:26:49,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:27:32] 2025-11-26 11:26:49,073 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:27:32] 2025-11-26 11:26:49,073 | INFO     | update_server=False
[2025-11-26 06:27:32] 2025-11-26 11:26:49,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:27:32] 2025-11-26 11:26:49,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:27:32] 2025-11-26 11:26:49,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:27:32] 2025-11-26 11:26:49,074 | INFO     | aborting loop
[2025-11-26 06:27:32] 2025-11-26 11:26:49,358 | INFO     | all data control threads have been joined
[2025-11-26 06:27:32] 2025-11-26 11:26:50,079 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:50,080 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:50,080 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:50,156 | INFO     | all payload control threads have been joined
[2025-11-26 06:27:32] 2025-11-26 11:26:50,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:27:32] 2025-11-26 11:26:50,266 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:50,376 | INFO     | [data] control thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:50,716 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:50,773 | INFO     | all job control threads have been joined
[2025-11-26 06:27:32] 2025-11-26 11:26:50,792 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:50,878 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:51,137 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:51,155 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:51,161 | INFO     | [payload] control thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:51,175 | INFO     | [job] validate thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:51,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:27:32] 2025-11-26 11:26:51,779 | INFO     | [job] control thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:52,225 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:55,567 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:26:59,991 | INFO     | job.realtimelogging is not enabled
[2025-11-26 06:27:32] 2025-11-26 11:27:00,997 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:27:32] 2025-11-26 11:27:18,736 | INFO     | PID=23926 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 06:27:32] 2025-11-26 11:27:18,737 | INFO     | .. there are 3 such processes running
[2025-11-26 06:27:32] 2025-11-26 11:27:18,737 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:27:32] 2025-11-26 11:27:18,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:27:32] 2025-11-26 11:27:18,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:27:32] 2025-11-26 11:27:25,126 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:27:32] 2025-11-26 11:27:27,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331264964416)>', '<ExcThread(monitor, started 140330968000256)>']
[2025-11-26 06:27:32] 2025-11-26 11:27:27,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:27:32] 2025-11-26 11:27:27,783 | INFO     | [monitor] control thread has ended
[2025-11-26 06:27:32] 2025-11-26 11:27:32,172 | INFO     | all workflow threads have been joined
[2025-11-26 06:27:32] 2025-11-26 11:27:32,173 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:27:32] 2025-11-26 11:27:32,173 | INFO     | traces error code: 0
[2025-11-26 06:27:32] 2025-11-26 11:27:32,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:27:32] 2025-11-26 11:27:32,285 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:27:32] 2025-11-26 11:27:32,287 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:27:32] 2025-11-26 11:27:32,290 [wrapper] pilotpid: 23926
[2025-11-26 06:27:32] 2025-11-26 11:27:32,292 [wrapper] Pilot exit status: 0
[2025-11-26 06:27:32] 2025-11-26 11:27:32,299 [wrapper] pandaids: 6895356907
[2025-11-26 06:27:32] 2025-11-26 11:27:32,345 [wrapper] cleanup supervisor_pilot 16137 23927
[2025-11-26 06:27:32] 2025-11-26 11:27:32,347 [wrapper] Test setup, not cleaning
[2025-11-26 06:27:32] 2025-11-26 11:27:32,350 [wrapper] apfmon messages muted
[2025-11-26 06:27:32] 2025-11-26 11:27:32,357 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:27:32] 2025-11-26 11:27:32,359 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:27:32]  *** Error codes and diagnostics ***
[2025-11-26 06:27:32]     "exeErrorCode": 0,
[2025-11-26 06:27:32]     "exeErrorDiag": "",
[2025-11-26 06:27:32]     "pilotErrorCode": 0,
[2025-11-26 06:27:32]     "pilotErrorDiag": "",
[2025-11-26 06:27:32]  *** Listing of results directory ***
[2025-11-26 06:27:32] total 1327932
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 06:30 queuedata.json
[2025-11-26 06:27:32] -rwx------ 1 boincer umatlas     36292 Nov 23 06:31 runpilot2-wrapper.sh
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas       100 Nov 25 10:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:27:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 10:58 run_atlas
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas       105 Nov 25 10:58 job.xml
[2025-11-26 06:27:32] -rw-r--r-- 2 boincer umatlas 408115466 Nov 25 10:58 EVNT.47483658._000708.pool.root.1
[2025-11-26 06:27:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 10:58 start_atlas.sh
[2025-11-26 06:27:32] drwxrwx--x 2 boincer umatlas      4096 Nov 25 10:58 shared
[2025-11-26 06:27:32] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 10:58 input.tar.gz
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas         0 Nov 25 10:58 boinc_lockfile
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 10:58 pandaJob.out
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas        57 Nov 25 10:58 setup.sh.local
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas    991909 Nov 25 10:58 agis_schedconf.cvmfs.json
[2025-11-26 06:27:32] drwx------ 5 boincer umatlas      4096 Nov 25 10:58 pilot3
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas       533 Nov 26 06:11 boinc_task_state.xml
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas      5953 Nov 26 06:21 init_data.xml
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas 923683098 Nov 26 06:25 HITS.47556137._007038.pool.root.1
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas      1080 Nov 26 06:26 memory_monitor_summary.json
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas   1516240 Nov 26 06:26 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas   2321872 Nov 26 06:26 log.47556137._007038.job.log.tgz.1
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas        95 Nov 26 06:26 pilot_heartbeat.json
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas      8665 Nov 26 06:26 heartbeat.json
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 06:27 boinc_mmap_file
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas        29 Nov 26 06:27 wrapper_checkpoint.txt
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas      4893 Nov 26 06:27 pilotlog.txt
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas   9722423 Nov 26 06:27 log.47556137._007038.job.log.1
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas       353 Nov 26 06:27 output.list
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas       620 Nov 26 06:27 runtime_log
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas  12062720 Nov 26 06:27 result.tar.gz
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas       668 Nov 26 06:27 xj7NDmwUNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqqKKDmPcqzem.diag
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 06:27 runtime_log.err
[2025-11-26 06:27:32] -rw-r--r-- 1 boincer umatlas     21275 Nov 26 06:27 stderr.txt
[2025-11-26 06:27:32] HITS file was successfully produced:
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas 923683098 Nov 26 06:25 shared/HITS.pool.root.1
[2025-11-26 06:27:32]  *** Contents of shared directory: ***
[2025-11-26 06:27:32] total 1312968
[2025-11-26 06:27:32] -rw-r--r-- 2 boincer umatlas 408115466 Nov 25 10:58 ATLAS.root_0
[2025-11-26 06:27:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 10:58 start_atlas.sh
[2025-11-26 06:27:32] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 10:58 input.tar.gz
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas 923683098 Nov 26 06:25 HITS.pool.root.1
[2025-11-26 06:27:32] -rw------- 1 boincer umatlas  12062720 Nov 26 06:27 result.tar.gz
06:27:33 (20248): run_atlas exited; CPU time 538387.604428
06:27:33 (20248): called boinc_finish(0)

</stderr_txt>
]]>

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