Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:03:27 (3375764): wrapper (7.7.26015): starting
12:03:27 (3375764): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:03:27] Arguments: --nthreads 8
[2025-11-25 12:03:27] Threads: 8
[2025-11-25 12:03:27] Checking for CVMFS
[2025-11-25 12:03:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:03:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:03:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:03:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:03:28] 2.13.3.0 12085 27451 372164 153289 3 111 22628607 25181184 34247 16776704 0 150473122 99.587 158104830 23124 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 12:03:28] CVMFS is ok
[2025-11-25 12:03:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:03:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:03:28] Further information can be found at the LHC@home message board.
[2025-11-25 12:03:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:03:28] Checking for apptainer binary...
[2025-11-25 12:03:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:03:28] Running /usr/bin/apptainer --version
[2025-11-25 12:03:29] apptainer version 1.4.4-1.el9
[2025-11-25 12:03:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:03:29] c-16-38.aglt2.org
[2025-11-25 12:03:29] apptainer works
[2025-11-25 12:03:29] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:03:29] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:03:29] Starting ATLAS job with PandaID=6895380005
[2025-11-25 12:03:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:34:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:34:06] 2025-11-26 18:33:07,987 | INFO     | .. there are 47 such processes running
[2025-11-26 13:34:06] 2025-11-26 18:33:08,204 | INFO     | monitor loop #5165: job 0:6895380005 is in state 'finished'
[2025-11-26 13:34:06] 2025-11-26 18:33:08,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:34:06] 2025-11-26 18:33:08,995 | INFO     | time since job start (91739s) is within the limit (172800.0s)
[2025-11-26 13:34:06] 2025-11-26 18:33:10,741 | INFO     | monitor loop #5166: job 0:6895380005 is in state 'finished'
[2025-11-26 13:34:06] 2025-11-26 18:33:10,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:34:06] 2025-11-26 18:33:11,047 | INFO     | time since job start (91742s) is within the limit (172800.0s)
[2025-11-26 13:34:06] 2025-11-26 18:33:13,056 | INFO     | time since job start (91744s) is within the limit (172800.0s)
[2025-11-26 13:34:06] 2025-11-26 18:33:13,246 | INFO     | monitor loop #5167: job 0:6895380005 is in state 'finished'
[2025-11-26 13:34:06] 2025-11-26 18:33:13,246 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:34:06] 2025-11-26 18:33:15,064 | INFO     | time since job start (91746s) is within the limit (172800.0s)
[2025-11-26 13:34:06] 2025-11-26 18:33:15,065 | INFO     | 91750s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 13:34:06] 2025-11-26 18:33:15,753 | INFO     | monitor loop #5168: job 0:6895380005 is in state 'finished'
[2025-11-26 13:34:06] 2025-11-26 18:33:15,753 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:34:06] 2025-11-26 18:33:15,866 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 13:34:06] 2025-11-26 18:33:15,883 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2808.0121875000004
[2025-11-26 13:34:06] 2025-11-26 18:33:15,947 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895380005/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:34:06] 2025-11-26 18:33:15,947 | INFO     | extracted standard info from prmon json
[2025-11-26 13:34:06] 2025-11-26 18:33:15,947 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:34:06] 2025-11-26 18:33:15,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:34:06] 2025-11-26 18:33:16,003 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:34:06] 2025-11-26 18:33:16,006 | INFO     | sum of square deviations: 1050727192621.7218
[2025-11-26 13:34:06] 2025-11-26 18:33:16,126 | INFO     | sum of deviations: 4045378126706.29
[2025-11-26 13:34:06] 2025-11-26 18:33:16,126 | INFO     | mean x: 1764136131.1657789
[2025-11-26 13:34:06] 2025-11-26 18:33:16,127 | INFO     | mean y: 2947483.2157123834
[2025-11-26 13:34:06] 2025-11-26 18:33:16,127 | INFO     | intersect: -6789108311.727045
[2025-11-26 13:34:06] 2025-11-26 18:33:16,133 | INFO     | chi2: 17.79852964803255
[2025-11-26 13:34:06] 2025-11-26 18:33:16,139 | INFO     | sum of square deviations: 1040269610790.3009
[2025-11-26 13:34:06] 2025-11-26 18:33:16,531 | INFO     | sum of deviations: 4543468725798.528
[2025-11-26 13:34:06] 2025-11-26 18:33:16,532 | INFO     | mean x: 1764135978.6713426
[2025-11-26 13:34:06] 2025-11-26 18:33:16,532 | INFO     | mean y: 2954745.3059452237
[2025-11-26 13:34:06] 2025-11-26 18:33:16,532 | INFO     | intersect: -7702063803.741106
[2025-11-26 13:34:06] 2025-11-26 18:33:16,534 | INFO     | chi2: 14.723762767121716
[2025-11-26 13:34:06] 2025-11-26 18:33:16,534 | INFO     | current chi2=14.723762767121716 (change=17.275398258814697 %)
[2025-11-26 13:34:06] 2025-11-26 18:33:16,534 | INFO     | right removable region: 1496
[2025-11-26 13:34:06] 2025-11-26 18:33:16,540 | INFO     | sum of square deviations: 1040268084570.2998
[2025-11-26 13:34:06] 2025-11-26 18:33:16,950 | INFO     | sum of deviations: 3459310844661.0005
[2025-11-26 13:34:06] 2025-11-26 18:33:16,950 | INFO     | mean x: 1764136283.6713426
[2025-11-26 13:34:06] 2025-11-26 18:33:16,950 | INFO     | mean y: 2956027.808951236
[2025-11-26 13:34:06] 2025-11-26 18:33:16,950 | INFO     | intersect: -5863508461.568373
[2025-11-26 13:34:06] 2025-11-26 18:33:16,953 | INFO     | chi2: 14.13958389904294
[2025-11-26 13:34:06] 2025-11-26 18:33:16,953 | INFO     | current chi2=14.13958389904294 (change=20.55757313298107 %)
[2025-11-26 13:34:06] 2025-11-26 18:33:16,953 | INFO     | left removable region: 10
[2025-11-26 13:34:06] 2025-11-26 18:33:16,961 | INFO     | sum of square deviations: 1017504827241.5781
[2025-11-26 13:34:06] 2025-11-26 18:33:17,109 | INFO     | time since job start (91748s) is within the limit (172800.0s)
[2025-11-26 13:34:06] 2025-11-26 18:33:17,161 | INFO     | sum of deviations: 3757133701516.9497
[2025-11-26 13:34:06] 2025-11-26 18:33:17,174 | INFO     | mean x: 1764136253.1823688
[2025-11-26 13:34:06] 2025-11-26 18:33:17,174 | INFO     | mean y: 2969076.6164199193
[2025-11-26 13:34:06] 2025-11-26 18:33:17,174 | INFO     | intersect: -6511099056.964689
[2025-11-26 13:34:06] 2025-11-26 18:33:17,202 | INFO     | chi2: 9.54639819898238
[2025-11-26 13:34:06] 2025-11-26 18:33:17,202 | INFO     | current memory leak: 3.69 B/s (using 1486 data points, chi2=9.55)
[2025-11-26 13:34:06] 2025-11-26 18:33:17,247 | INFO     | could have reported an average CPU frequency of 2808 MHz (53 samples)
[2025-11-26 13:34:06] 2025-11-26 18:33:17,247 | INFO     | ..............................
[2025-11-26 13:34:06] 2025-11-26 18:33:17,247 | INFO     | . Timing measurements:
[2025-11-26 13:34:06] 2025-11-26 18:33:17,247 | INFO     | . get job = 0 s
[2025-11-26 13:34:06] 2025-11-26 18:33:17,248 | INFO     | . initial setup = 4 s
[2025-11-26 13:34:06] 2025-11-26 18:33:17,248 | INFO     | . payload setup = 35 s
[2025-11-26 13:34:06] 2025-11-26 18:33:17,248 | INFO     | . stage-in = 0 s
[2025-11-26 13:34:06] 2025-11-26 18:33:17,248 | INFO     | . payload execution = 91621 s
[2025-11-26 13:34:06] 2025-11-26 18:33:17,248 | INFO     | . stage-out = 10 s
[2025-11-26 13:34:06] 2025-11-26 18:33:17,248 | INFO     | . log creation = 2 s
[2025-11-26 13:34:06] 2025-11-26 18:33:17,248 | INFO     | ..............................
[2025-11-26 13:34:06] 2025-11-26 18:33:18,143 | INFO     | 
[2025-11-26 13:34:06] 2025-11-26 18:33:18,143 | INFO     | job summary report
[2025-11-26 13:34:06] 2025-11-26 18:33:18,144 | INFO     | --------------------------------------------------
[2025-11-26 13:34:06] 2025-11-26 18:33:18,144 | INFO     | PanDA job id: 6895380005
[2025-11-26 13:34:06] 2025-11-26 18:33:18,144 | INFO     | task id: 47556137
[2025-11-26 13:34:06] 2025-11-26 18:33:18,144 | INFO     | errors: (none)
[2025-11-26 13:34:06] 2025-11-26 18:33:18,144 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:34:06] 2025-11-26 18:33:18,144 | INFO     | pilot state: finished 
[2025-11-26 13:34:06] 2025-11-26 18:33:18,144 | INFO     | transexitcode: 0
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | exeerrorcode: 0
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | exeerrordiag: 
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | exitcode: 0
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | exitmsg: OK
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | cpuconsumptiontime: 331418 s
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | nevents: 1000
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | neventsw: 0
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | pid: 3387959
[2025-11-26 13:34:06] 2025-11-26 18:33:18,145 | INFO     | pgrp: 3387959
[2025-11-26 13:34:06] 2025-11-26 18:33:18,146 | INFO     | corecount: 8
[2025-11-26 13:34:06] 2025-11-26 18:33:18,146 | INFO     | event service: False
[2025-11-26 13:34:06] 2025-11-26 18:33:18,146 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 20: 2284633, 23: 2284661, 91662: 2350075, 91664: 2350202, 91675: 2359252, 91676: 2359308, 91707: 2359650}
[2025-11-26 13:34:06] 2025-11-26 18:33:18,146 | INFO     | --------------------------------------------------
[2025-11-26 13:34:06] 2025-11-26 18:33:18,146 | INFO     | 
[2025-11-26 13:34:06] 2025-11-26 18:33:18,146 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 13:34:06] 2025-11-26 18:33:18,354 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,355 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,355 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,355 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,355 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,355 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,355 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,355 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,356 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,356 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,356 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,356 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,356 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,357 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:34:06] 2025-11-26 18:33:18,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,357 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:34:06] 2025-11-26 18:33:18,357 | INFO     | job 6895380005 has completed (purged errors)
[2025-11-26 13:34:06] 2025-11-26 18:33:18,357 | INFO     | overall cleanup function is called
[2025-11-26 13:34:06] 2025-11-26 18:33:19,392 | INFO     | --- collectZombieJob: --- 10, [3387959]
[2025-11-26 13:34:06] 2025-11-26 18:33:19,392 | INFO     | zombie collector waiting for pid 3387959
[2025-11-26 13:34:06] 2025-11-26 18:33:19,393 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:34:06] 2025-11-26 18:33:19,393 | INFO     | collected zombie processes
[2025-11-26 13:34:06] 2025-11-26 18:33:19,393 | INFO     | will attempt to kill all subprocesses of pid=3387959
[2025-11-26 13:34:06] 2025-11-26 18:33:21,894 | INFO     | process IDs to be killed: [3387959] (in reverse order)
[2025-11-26 13:34:06] 2025-11-26 18:33:22,295 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:34:06] 2025-11-26 18:33:22,316 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:34:06] 2025-11-26 18:33:22,399 | INFO     | did not find any defunct processes belonging to 3387959
[2025-11-26 13:34:06] 2025-11-26 18:33:22,439 | INFO     | did not find any defunct processes belonging to 3387959
[2025-11-26 13:34:06] 2025-11-26 18:33:22,444 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:34:06] 2025-11-26 18:33:22,444 | INFO     | ready for new job
[2025-11-26 13:34:06] 2025-11-26 18:33:22,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:34:06] 2025-11-26 18:33:22,454 | INFO     | ***************************************
[2025-11-26 13:34:06] 2025-11-26 18:33:22,454 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:34:06] 2025-11-26 18:33:22,454 | INFO     | ***************************************
[2025-11-26 13:34:06] 2025-11-26 18:33:22,455 | INFO     | 
[2025-11-26 13:34:06] 2025-11-26 18:33:22,461 | INFO     | architecture information:
[2025-11-26 13:34:06] 2025-11-26 18:33:22,473 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:34:06] 2025-11-26 18:33:22,511 | INFO     | cat /etc/os-release:
[2025-11-26 13:34:06] NAME="CentOS Linux"
[2025-11-26 13:34:06] VERSION="7 (Core)"
[2025-11-26 13:34:06] ID="centos"
[2025-11-26 13:34:06] ID_LIKE="rhel fedora"
[2025-11-26 13:34:06] VERSION_ID="7"
[2025-11-26 13:34:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:34:06] ANSI_COLOR="0;31"
[2025-11-26 13:34:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:34:06] HOME_URL="https://www.centos.org/"
[2025-11-26 13:34:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:34:06] 
[2025-11-26 13:34:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:34:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:34:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:34:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:34:06] 
[2025-11-26 13:34:06] 2025-11-26 18:33:22,512 | INFO     | ***************************************
[2025-11-26 13:34:06] 2025-11-26 18:33:23,015 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 13:34:06] 2025-11-26 18:33:23,075 | INFO     | sufficient remaining disk space (58835599360 B)
[2025-11-26 13:34:06] 2025-11-26 18:33:23,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:34:06] 2025-11-26 18:33:23,075 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:34:06] 2025-11-26 18:33:23,075 | INFO     | update_server=False
[2025-11-26 13:34:06] 2025-11-26 18:33:23,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:34:06] 2025-11-26 18:33:23,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:34:06] 2025-11-26 18:33:23,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:34:06] 2025-11-26 18:33:23,122 | INFO     | all payload control threads have been joined
[2025-11-26 13:34:06] 2025-11-26 18:33:23,247 | INFO     | all data control threads have been joined
[2025-11-26 13:34:06] 2025-11-26 18:33:23,312 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 13:34:06] 2025-11-26 18:33:23,312 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 13:34:06] 2025-11-26 18:33:23,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:34:06] 2025-11-26 18:33:23,313 | INFO     | will abort loop
[2025-11-26 13:34:06] 2025-11-26 18:33:24,083 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,092 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,128 | INFO     | [payload] control thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,252 | INFO     | [data] control thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,276 | INFO     | [job] validate thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,288 | INFO     | all job control threads have been joined
[2025-11-26 13:34:06] 2025-11-26 18:33:24,327 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,378 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,592 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,593 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,593 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,889 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:24,890 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:25,085 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:25,294 | INFO     | [job] control thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:25,483 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:34:06] 2025-11-26 18:33:29,528 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:34:06] 2025-11-26 18:33:53,127 | INFO     | PID=3379713 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:34:06] 2025-11-26 18:33:53,127 | INFO     | .. there are 47 such processes running
[2025-11-26 13:34:06] 2025-11-26 18:33:53,127 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:34:06] 2025-11-26 18:33:53,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:34:06] 2025-11-26 18:33:53,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:34:06] 2025-11-26 18:33:57,789 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:34:06] 2025-11-26 18:33:59,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139994997139264)>', '<ExcThread(monitor, started 139994366723840)>']
[2025-11-26 13:34:06] 2025-11-26 18:34:00,227 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:34:06] 2025-11-26 18:34:00,227 | INFO     | [monitor] control thread has ended
[2025-11-26 13:34:06] 2025-11-26 18:34:04,839 | INFO     | all workflow threads have been joined
[2025-11-26 13:34:06] 2025-11-26 18:34:04,839 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:34:06] 2025-11-26 18:34:04,840 | INFO     | traces error code: 0
[2025-11-26 13:34:06] 2025-11-26 18:34:04,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:34:06] 2025-11-26 18:34:05,520 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:34:06] 2025-11-26 18:34:05,536 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:34:06] 2025-11-26 18:34:05,552 [wrapper] pilotpid: 3379713
[2025-11-26 13:34:06] 2025-11-26 18:34:05,567 [wrapper] Pilot exit status: 0
[2025-11-26 13:34:06] 2025-11-26 18:34:05,717 [wrapper] pandaids: 6895380005
[2025-11-26 13:34:06] 2025-11-26 18:34:05,917 [wrapper] cleanup supervisor_pilot 1142428 3379714
[2025-11-26 13:34:06] 2025-11-26 18:34:05,947 [wrapper] Test setup, not cleaning
[2025-11-26 13:34:06] 2025-11-26 18:34:05,967 [wrapper] apfmon messages muted
[2025-11-26 13:34:06] 2025-11-26 18:34:05,983 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:34:06] 2025-11-26 18:34:06,024 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:34:06]  *** Error codes and diagnostics ***
[2025-11-26 13:34:06]     "exeErrorCode": 0,
[2025-11-26 13:34:06]     "exeErrorDiag": "",
[2025-11-26 13:34:06]     "pilotErrorCode": 0,
[2025-11-26 13:34:06]     "pilotErrorDiag": "",
[2025-11-26 13:34:06]  *** Listing of results directory ***
[2025-11-26 13:34:06] total 1319456
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-26 13:34:06] -rwx------. 1 boincer umatlas     36292 Nov 23 21:33 runpilot2-wrapper.sh
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 21:33 queuedata.json
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas       100 Nov 25 12:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:34:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 12:03 run_atlas
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas       105 Nov 25 12:03 job.xml
[2025-11-26 13:34:06] -rw-r--r--. 2 boincer umatlas 409180073 Nov 25 12:03 EVNT.47483658._000983.pool.root.1
[2025-11-26 13:34:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:03 start_atlas.sh
[2025-11-26 13:34:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 12:03 shared
[2025-11-26 13:34:06] -rw-r--r--. 2 boincer umatlas    611284 Nov 25 12:03 input.tar.gz
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas         0 Nov 25 12:03 boinc_lockfile
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 12:03 pandaJob.out
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas        57 Nov 25 12:03 setup.sh.local
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas    991543 Nov 25 12:04 agis_schedconf.cvmfs.json
[2025-11-26 13:34:06] drwx------. 7 boincer umatlas      4096 Nov 25 12:04 pilot3
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas       533 Nov 26 13:04 boinc_task_state.xml
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas      6615 Nov 26 13:29 init_data.xml
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas 910752941 Nov 26 13:31 HITS.47556137._009698.pool.root.1
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas      1059 Nov 26 13:32 memory_monitor_summary.json
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas   1516240 Nov 26 13:32 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas   2495222 Nov 26 13:32 log.47556137._009698.job.log.tgz.1
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas      8623 Nov 26 13:33 heartbeat.json
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas        95 Nov 26 13:33 pilot_heartbeat.json
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 13:34 boinc_mmap_file
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas        29 Nov 26 13:34 wrapper_checkpoint.txt
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas      5010 Nov 26 13:34 pilotlog.txt
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas  11119141 Nov 26 13:34 log.47556137._009698.job.log.1
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas       353 Nov 26 13:34 output.list
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas       620 Nov 26 13:34 runtime_log
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas  13629440 Nov 26 13:34 result.tar.gz
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas       659 Nov 26 13:34 WLjLDm2Zbh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmusIKDmKlbtcn.diag
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 13:34 runtime_log.err
[2025-11-26 13:34:06] -rw-r--r--. 1 boincer umatlas     21772 Nov 26 13:34 stderr.txt
[2025-11-26 13:34:06] HITS file was successfully produced:
[2025-11-26 13:34:06] -rw-------. 1 boincer umatlas 910752941 Nov 26 13:31 shared/HITS.pool.root.1
[2025-11-26 13:34:06]  *** Contents of shared directory: ***
[2025-11-26 13:34:07] total 1302932
[2025-11-26 13:34:07] -rw-r--r--. 2 boincer umatlas 409180073 Nov 25 12:03 ATLAS.root_0
[2025-11-26 13:34:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:03 start_atlas.sh
[2025-11-26 13:34:07] -rw-r--r--. 2 boincer umatlas    611284 Nov 25 12:03 input.tar.gz
[2025-11-26 13:34:07] -rw-------. 1 boincer umatlas 910752941 Nov 26 13:31 HITS.pool.root.1
[2025-11-26 13:34:07] -rw-------. 1 boincer umatlas  13629440 Nov 26 13:34 result.tar.gz
13:34:08 (3375764): run_atlas exited; CPU time 335882.180164
13:34:08 (3375764): called boinc_finish(0)

</stderr_txt>
]]>

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