Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:32 (3774033): wrapper (7.7.26015): starting
00:03:32 (3774033): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:32] Arguments: --nthreads 9
[2025-11-26 00:03:32] Threads: 9
[2025-11-26 00:03:32] Checking for CVMFS
[2025-11-26 00:03:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:34] 2.13.2.0 9825 36282 403920 153309 0 344 30152299 40960000 21085 16776704 0 82096377 99.601 84430070 34360 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:03:34] CVMFS is ok
[2025-11-26 00:03:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:34] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:34] Checking for apptainer binary...
[2025-11-26 00:03:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:34] Running /usr/bin/apptainer --version
[2025-11-26 00:03:34] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:35] c-211-35-1.aglt2.org
[2025-11-26 00:03:35] apptainer works
[2025-11-26 00:03:35] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:35] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:35] Starting ATLAS job with PandaID=6895331381
[2025-11-26 00:03:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:05 (3774033): BOINC client no longer exists - exiting
00:20:05 (3774033): timer handler: client dead, exiting
00:28:11 (3937496): wrapper (7.7.26015): starting
00:28:11 (3937496): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 00:28:11] Arguments: --nthreads 11
[2025-11-26 00:28:11] Threads: 11
[2025-11-26 00:28:11] This job has been restarted, cleaning up previous attempt
[2025-11-26 00:28:11] Checking for CVMFS
[2025-11-26 00:28:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:28:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:28:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:28:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:28:11] 2.13.2.0 9825 36307 406400 153311 0 405 30665774 40960001 14372 16776704 0 82420014 99.602 84518797 34341 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:28:11] CVMFS is ok
[2025-11-26 00:28:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:28:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:28:11] Further information can be found at the LHC@home message board.
[2025-11-26 00:28:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:28:11] Checking for apptainer binary...
[2025-11-26 00:28:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:28:11] Running /usr/bin/apptainer --version
[2025-11-26 00:28:11] apptainer version 1.4.4-1.el9
[2025-11-26 00:28:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:28:11] c-211-35-1.aglt2.org
[2025-11-26 00:28:11] apptainer works
[2025-11-26 00:28:11] Set ATHENA_PROC_NUMBER=11
[2025-11-26 00:28:11] Set ATHENA_CORE_NUMBER=11
[2025-11-26 00:28:11] Starting ATLAS job with PandaID=6895331381
[2025-11-26 00:28:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:32:58]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:32:58] 2025-11-27 01:31:58,824 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:32:58] 2025-11-27 01:31:58,846 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:32:58] 2025-11-27 01:31:58,848 | INFO     | sum of square deviations: 514698923349.9465
[2025-11-26 20:32:58] 2025-11-27 01:31:58,856 | INFO     | time since job start (72215s) is within the limit (172800.0s)
[2025-11-26 20:32:58] 2025-11-27 01:31:58,878 | INFO     | sum of deviations: 4581879761395.472
[2025-11-26 20:32:58] 2025-11-27 01:31:58,878 | INFO     | mean x: 1764171020.4932432
[2025-11-26 20:32:58] 2025-11-27 01:31:58,878 | INFO     | mean y: 3411479.184121622
[2025-11-26 20:32:58] 2025-11-27 01:31:58,878 | INFO     | intersect: -15701341586.604914
[2025-11-26 20:32:58] 2025-11-27 01:31:58,880 | INFO     | chi2: 8.915231691328803
[2025-11-26 20:32:58] 2025-11-27 01:31:58,882 | INFO     | sum of square deviations: 508207841854.755
[2025-11-26 20:32:58] 2025-11-27 01:31:58,910 | INFO     | sum of deviations: 5067884348527.164
[2025-11-26 20:32:58] 2025-11-27 01:31:58,911 | INFO     | mean x: 1764170868.014419
[2025-11-26 20:32:58] 2025-11-27 01:31:58,911 | INFO     | mean y: 3422894.2256149277
[2025-11-26 20:32:58] 2025-11-27 01:31:58,911 | INFO     | intersect: -17589013101.0715
[2025-11-26 20:32:58] 2025-11-27 01:31:58,912 | INFO     | chi2: 5.503064848502541
[2025-11-26 20:32:58] 2025-11-27 01:31:58,913 | INFO     | current chi2=5.503064848502541 (change=38.27345111114754 %)
[2025-11-26 20:32:58] 2025-11-27 01:31:58,914 | INFO     | sum of square deviations: 501771526930.06866
[2025-11-26 20:32:58] 2025-11-27 01:31:58,943 | INFO     | sum of deviations: 5441999510835.163
[2025-11-26 20:32:58] 2025-11-27 01:31:58,943 | INFO     | mean x: 1764170715.5349233
[2025-11-26 20:32:58] 2025-11-27 01:31:58,943 | INFO     | mean y: 3431748.873935264
[2025-11-26 20:32:58] 2025-11-27 01:31:58,943 | INFO     | intersect: -19130009779.20384
[2025-11-26 20:32:58] 2025-11-27 01:31:58,945 | INFO     | chi2: 3.1330764326715315
[2025-11-26 20:32:58] 2025-11-27 01:31:58,945 | INFO     | current chi2=3.1330764326715315 (change=43.06669975869748 %)
[2025-11-26 20:32:58] 2025-11-27 01:31:58,946 | INFO     | sum of square deviations: 495389531015.8143
[2025-11-26 20:32:58] 2025-11-27 01:31:58,972 | INFO     | sum of deviations: 5509014632374.997
[2025-11-26 20:32:58] 2025-11-27 01:31:58,972 | INFO     | mean x: 1764170563.0521812
[2025-11-26 20:32:58] 2025-11-27 01:31:58,972 | INFO     | mean y: 3433344.6886227545
[2025-11-26 20:32:58] 2025-11-27 01:31:58,972 | INFO     | intersect: -19615151299.058018
[2025-11-26 20:32:58] 2025-11-27 01:31:58,974 | INFO     | chi2: 2.837354554258937
[2025-11-26 20:32:58] 2025-11-27 01:31:58,974 | INFO     | current chi2=2.837354554258937 (change=9.43870616525102 %)
[2025-11-26 20:32:58] 2025-11-27 01:31:58,974 | INFO     | right removable region: 1168
[2025-11-26 20:32:58] 2025-11-27 01:31:58,975 | INFO     | sum of square deviations: 508204379510.8097
[2025-11-26 20:32:58] 2025-11-27 01:31:59,002 | INFO     | sum of deviations: 4169000310005.425
[2025-11-26 20:32:58] 2025-11-27 01:31:59,002 | INFO     | mean x: 1764171173.0127227
[2025-11-26 20:32:58] 2025-11-27 01:31:59,003 | INFO     | mean y: 3421166.905004241
[2025-11-26 20:32:58] 2025-11-27 01:31:59,003 | INFO     | intersect: -14468768494.806156
[2025-11-26 20:32:58] 2025-11-27 01:31:59,004 | INFO     | chi2: 6.560342299488647
[2025-11-26 20:32:58] 2025-11-27 01:31:59,004 | INFO     | current chi2=6.560342299488647 (change=26.414225377121557 %)
[2025-11-26 20:32:58] 2025-11-27 01:31:59,006 | INFO     | sum of square deviations: 501765610864.9679
[2025-11-26 20:32:58] 2025-11-27 01:31:59,034 | INFO     | sum of deviations: 4019002363633.386
[2025-11-26 20:32:58] 2025-11-27 01:31:59,035 | INFO     | mean x: 1764171325.5212948
[2025-11-26 20:32:58] 2025-11-27 01:31:59,035 | INFO     | mean y: 3424719.404599659
[2025-11-26 20:32:58] 2025-11-27 01:31:59,035 | INFO     | intersect: -14127094737.482615
[2025-11-26 20:32:58] 2025-11-27 01:31:59,036 | INFO     | chi2: 6.4276435087039765
[2025-11-26 20:32:58] 2025-11-27 01:31:59,036 | INFO     | current chi2=6.4276435087039765 (change=2.0227418742313725 %)
[2025-11-26 20:32:58] 2025-11-27 01:31:59,036 | INFO     | left removable region: 20
[2025-11-26 20:32:58] 2025-11-27 01:31:59,037 | INFO     | sum of square deviations: 469165490319.38965
[2025-11-26 20:32:58] 2025-11-27 01:31:59,067 | INFO     | sum of deviations: 4705892438245.522
[2025-11-26 20:32:58] 2025-11-27 01:31:59,067 | INFO     | mean x: 1764171142.608885
[2025-11-26 20:32:58] 2025-11-27 01:31:59,067 | INFO     | mean y: 3452393.3597560977
[2025-11-26 20:32:58] 2025-11-27 01:31:59,067 | INFO     | intersect: -17691795469.227997
[2025-11-26 20:32:58] 2025-11-27 01:31:59,069 | INFO     | chi2: 0.22712712087497622
[2025-11-26 20:32:58] 2025-11-27 01:31:59,069 | INFO     | current memory leak: 10.03 B/s (using 1148 data points, chi2=0.23)
[2025-11-26 20:32:58] 2025-11-27 01:31:59,071 | INFO     | could have reported an average CPU frequency of 2507 MHz (43 samples)
[2025-11-26 20:32:58] 2025-11-27 01:31:59,071 | INFO     | ..............................
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | . Timing measurements:
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | . get job = 0 s
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | . initial setup = 1 s
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | . payload setup = 6 s
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | . stage-in = 0 s
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | . payload execution = 72173 s
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | . stage-out = 4 s
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | . log creation = 1 s
[2025-11-26 20:32:58] 2025-11-27 01:31:59,072 | INFO     | ..............................
[2025-11-26 20:32:58] 2025-11-27 01:31:59,337 | INFO     | 
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | job summary report
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | --------------------------------------------------
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | PanDA job id: 6895331381
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | task id: 47556137
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | errors: (none)
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | pilot state: finished 
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | transexitcode: 0
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | exeerrorcode: 0
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | exeerrordiag: 
[2025-11-26 20:32:58] 2025-11-27 01:31:59,338 | INFO     | exitcode: 0
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | exitmsg: OK
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | cpuconsumptiontime: 277506 s
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | nevents: 1000
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | neventsw: 0
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | pid: 4012622
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | pgrp: 4012622
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | corecount: 11
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | event service: False
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 72181: 2341675, 72187: 2350669, 72188: 2350725, 72200: 2351099}
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | --------------------------------------------------
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | 
[2025-11-26 20:32:58] 2025-11-27 01:31:59,339 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 20:32:58] 2025-11-27 01:31:59,390 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,390 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,390 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,390 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,392 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:32:58] 2025-11-27 01:31:59,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,392 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:32:58] 2025-11-27 01:31:59,392 | INFO     | job 6895331381 has completed (purged errors)
[2025-11-26 20:32:58] 2025-11-27 01:31:59,392 | INFO     | overall cleanup function is called
[2025-11-26 20:32:58] 2025-11-27 01:32:00,493 | INFO     | --- collectZombieJob: --- 10, [4012622]
[2025-11-26 20:32:58] 2025-11-27 01:32:00,493 | INFO     | zombie collector waiting for pid 4012622
[2025-11-26 20:32:58] 2025-11-27 01:32:00,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:32:58] 2025-11-27 01:32:00,493 | INFO     | collected zombie processes
[2025-11-26 20:32:58] 2025-11-27 01:32:00,493 | INFO     | will attempt to kill all subprocesses of pid=4012622
[2025-11-26 20:32:58] 2025-11-27 01:32:01,201 | INFO     | process IDs to be killed: [4012622] (in reverse order)
[2025-11-26 20:32:58] 2025-11-27 01:32:01,326 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:32:58] 2025-11-27 01:32:01,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:32:58] 2025-11-27 01:32:01,433 | INFO     | did not find any defunct processes belonging to 4012622
[2025-11-26 20:32:58] 2025-11-27 01:32:01,508 | INFO     | did not find any defunct processes belonging to 4012622
[2025-11-26 20:32:58] 2025-11-27 01:32:01,535 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:32:58] 2025-11-27 01:32:01,535 | INFO     | ready for new job
[2025-11-26 20:32:58] 2025-11-27 01:32:01,535 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:32:58] 2025-11-27 01:32:01,543 | INFO     | ***************************************
[2025-11-26 20:32:58] 2025-11-27 01:32:01,543 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:32:58] 2025-11-27 01:32:01,544 | INFO     | ***************************************
[2025-11-26 20:32:58] 2025-11-27 01:32:01,544 | INFO     | 
[2025-11-26 20:32:58] 2025-11-27 01:32:01,550 | INFO     | architecture information:
[2025-11-26 20:32:58] 2025-11-27 01:32:01,551 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:32:58] 2025-11-27 01:32:01,611 | INFO     | cat /etc/os-release:
[2025-11-26 20:32:58] NAME="CentOS Linux"
[2025-11-26 20:32:58] VERSION="7 (Core)"
[2025-11-26 20:32:58] ID="centos"
[2025-11-26 20:32:58] ID_LIKE="rhel fedora"
[2025-11-26 20:32:58] VERSION_ID="7"
[2025-11-26 20:32:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:32:58] ANSI_COLOR="0;31"
[2025-11-26 20:32:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:32:58] HOME_URL="https://www.centos.org/"
[2025-11-26 20:32:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:32:58] 
[2025-11-26 20:32:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:32:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:32:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:32:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:32:58] 
[2025-11-26 20:32:58] 2025-11-27 01:32:01,611 | INFO     | ***************************************
[2025-11-26 20:32:58] 2025-11-27 01:32:02,115 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 20:32:58] 2025-11-27 01:32:02,148 | INFO     | sufficient remaining disk space (117129084928 B)
[2025-11-26 20:32:58] 2025-11-27 01:32:02,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:32:58] 2025-11-27 01:32:02,149 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:32:58] 2025-11-27 01:32:02,149 | INFO     | update_server=False
[2025-11-26 20:32:58] 2025-11-27 01:32:02,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:32:58] 2025-11-27 01:32:02,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:32:58] 2025-11-27 01:32:02,150 | INFO     | aborting loop
[2025-11-26 20:32:58] 2025-11-27 01:32:02,152 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:32:58] 2025-11-27 01:32:02,362 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:32:58] 2025-11-27 01:32:02,693 | INFO     | all payload control threads have been joined
[2025-11-26 20:32:58] 2025-11-27 01:32:03,053 | INFO     | all job control threads have been joined
[2025-11-26 20:32:58] 2025-11-27 01:32:03,150 | INFO     | all data control threads have been joined
[2025-11-26 20:32:58] 2025-11-27 01:32:03,158 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:03,158 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:03,275 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:03,697 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:03,699 | INFO     | [payload] control thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:03,848 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:03,984 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:04,075 | INFO     | [job] control thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:04,156 | INFO     | [data] control thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:04,159 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:04,164 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:04,266 | INFO     | [job] validate thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:04,271 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:32:58] 2025-11-27 01:32:04,292 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:04,640 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:05,277 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:06,370 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:32:58] 2025-11-27 01:32:32,614 | INFO     | PID=3966077 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:32:58] 2025-11-27 01:32:32,615 | INFO     | .. there are 25 such processes running
[2025-11-26 20:32:58] 2025-11-27 01:32:32,616 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:32:58] 2025-11-27 01:32:32,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:32:58] 2025-11-27 01:32:32,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:32:58] 2025-11-27 01:32:35,735 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:32:58] 2025-11-27 01:32:37,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140688916305728)>', '<ExcThread(monitor, started 140688297555712)>']
[2025-11-26 20:32:58] 2025-11-27 01:32:38,653 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:32:58] 2025-11-27 01:32:38,654 | INFO     | [monitor] control thread has ended
[2025-11-26 20:32:58] 2025-11-27 01:32:42,852 | INFO     | all workflow threads have been joined
[2025-11-26 20:32:58] 2025-11-27 01:32:42,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:32:58] 2025-11-27 01:32:42,853 | INFO     | traces error code: 0
[2025-11-26 20:32:58] 2025-11-27 01:32:42,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:32:58] 2025-11-27 01:32:43,025 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:32:58] 2025-11-27 01:32:43,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:32:58] 2025-11-27 01:32:43,033 [wrapper] pilotpid: 3966077
[2025-11-26 20:32:58] 2025-11-27 01:32:43,036 [wrapper] Pilot exit status: 0
[2025-11-26 20:32:58] 2025-11-27 01:32:43,048 [wrapper] pandaids: 6895331381 6895331381
[2025-11-26 20:32:58] 2025-11-27 01:32:43,138 [wrapper] cleanup supervisor_pilot 3387337 3966080
[2025-11-26 20:32:58] 2025-11-27 01:32:43,141 [wrapper] Test setup, not cleaning
[2025-11-26 20:32:58] 2025-11-27 01:32:43,144 [wrapper] apfmon messages muted
[2025-11-26 20:32:58] 2025-11-27 01:32:43,146 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:32:58] 2025-11-27 01:32:43,149 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:32:58]  *** Error codes and diagnostics ***
[2025-11-26 20:32:58]     "exeErrorCode": 0,
[2025-11-26 20:32:58]     "exeErrorDiag": "",
[2025-11-26 20:32:58]     "pilotErrorCode": 0,
[2025-11-26 20:32:58]     "pilotErrorDiag": "",
[2025-11-26 20:32:58]  *** Listing of results directory ***
[2025-11-26 20:32:58] total 1715704
[2025-11-26 20:32:58] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 18:30 pilot3.tar.gz
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 18:34 queuedata.json
[2025-11-26 20:32:58] -rwx------. 1 boincer umatlas     36292 Nov 21 18:34 runpilot2-wrapper.sh
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:32:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 20:32:58] -rw-r--r--. 3 boincer umatlas 407805581 Nov 26 00:03 EVNT.47483658._000172.pool.root.1
[2025-11-26 20:32:58] -rw-r--r--. 3 boincer umatlas 407805581 Nov 26 00:03 ATLAS.root_0
[2025-11-26 20:32:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 20:32:58] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:03 input.tar.gz
[2025-11-26 20:32:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:28 pandaJob.out
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas        57 Nov 26 00:28 setup.sh.local
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas    991877 Nov 26 00:28 agis_schedconf.cvmfs.json
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:18 boinc_task_state.xml
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas      6882 Nov 26 20:30 init_data.xml
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas 914621827 Nov 26 20:30 HITS.47556137._001718.pool.root.1
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas      1061 Nov 26 20:31 memory_monitor_summary.json
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:31 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas   2570328 Nov 26 20:31 log.47556137._001718.job.log.tgz.1
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas      8622 Nov 26 20:31 heartbeat.json
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas        96 Nov 26 20:32 pilot_heartbeat.json
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas      4825 Nov 26 20:32 pilotlog.txt
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas   8793442 Nov 26 20:32 log.47556137._001718.job.log.1
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas       353 Nov 26 20:32 output.list
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:32 runtime_log
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas  11386880 Nov 26 20:32 result.tar.gz
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas      9440 Nov 26 20:32 runtime_log.err
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas       788 Nov 26 20:32 iNMMDmLppg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjmJKDmK8QLcm.diag
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:32 wrapper_checkpoint.txt
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:32 boinc_mmap_file
[2025-11-26 20:32:58] -rw-r--r--. 1 boincer umatlas     23419 Nov 26 20:32 stderr.txt
[2025-11-26 20:32:58] HITS file was successfully produced:
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas 914621827 Nov 26 20:30 shared/HITS.pool.root.1
[2025-11-26 20:32:58]  *** Contents of shared directory: ***
[2025-11-26 20:32:58] total 1303156
[2025-11-26 20:32:58] -rw-r--r--. 3 boincer umatlas 407805581 Nov 26 00:03 ATLAS.root_0
[2025-11-26 20:32:58] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:03 input.tar.gz
[2025-11-26 20:32:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas 914621827 Nov 26 20:30 HITS.pool.root.1
[2025-11-26 20:32:58] -rw-------. 1 boincer umatlas  11386880 Nov 26 20:32 result.tar.gz
20:33:00 (3937496): run_atlas exited; CPU time 279561.713271
20:33:00 (3937496): called boinc_finish(0)

</stderr_txt>
]]>

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