Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:30:36 (1132628): wrapper (7.7.26015): starting
10:30:36 (1132628): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 10:30:36] Arguments: --nthreads 8
[2025-11-25 10:30:36] Threads: 8
[2025-11-25 10:30:36] Checking for CVMFS
[2025-11-25 10:30:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:30:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:30:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:30:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:30:38] 2.13.3.0 13122 28794 368680 153287 1 353 32003308 32935936 43700 16776704 0 140890983 99.563 159242370 36227 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 10:30:38] CVMFS is ok
[2025-11-25 10:30:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:30:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:30:39] Further information can be found at the LHC@home message board.
[2025-11-25 10:30:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:30:39] Checking for apptainer binary...
[2025-11-25 10:30:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:30:39] Running /usr/bin/apptainer --version
[2025-11-25 10:30:39] apptainer version 1.4.4-1.el9
[2025-11-25 10:30:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:30:39] c6-8-25-2.aglt2.org
[2025-11-25 10:30:39] apptainer works
[2025-11-25 10:30:39] Set ATHENA_PROC_NUMBER=8
[2025-11-25 10:30:39] Set ATHENA_CORE_NUMBER=8
[2025-11-25 10:30:39] Starting ATLAS job with PandaID=6896577584
[2025-11-25 10:30:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:36:05]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:36:05] 2025-11-26 21:35:20,465 | INFO     | time since job start (108228s) is within the limit (172800.0s)
[2025-11-26 16:36:05] 2025-11-26 21:35:20,482 | INFO     | monitor loop #6193: job 0:6896577584 is in state 'finished'
[2025-11-26 16:36:05] 2025-11-26 21:35:20,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:36:05] 2025-11-26 21:35:22,475 | INFO     | time since job start (108230s) is within the limit (172800.0s)
[2025-11-26 16:36:05] 2025-11-26 21:35:22,987 | INFO     | monitor loop #6194: job 0:6896577584 is in state 'finished'
[2025-11-26 16:36:05] 2025-11-26 21:35:22,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:36:05] 2025-11-26 21:35:24,481 | INFO     | time since job start (108232s) is within the limit (172800.0s)
[2025-11-26 16:36:05] 2025-11-26 21:35:25,492 | INFO     | monitor loop #6195: job 0:6896577584 is in state 'finished'
[2025-11-26 16:36:05] 2025-11-26 21:35:25,493 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:36:05] 2025-11-26 21:35:26,489 | INFO     | time since job start (108234s) is within the limit (172800.0s)
[2025-11-26 16:36:05] 2025-11-26 21:35:28,005 | INFO     | monitor loop #6196: job 0:6896577584 is in state 'finished'
[2025-11-26 16:36:05] 2025-11-26 21:35:28,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:36:05] 2025-11-26 21:35:28,496 | INFO     | time since job start (108236s) is within the limit (172800.0s)
[2025-11-26 16:36:05] 2025-11-26 21:35:28,496 | INFO     | 108240s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 16:36:05] 2025-11-26 21:35:30,504 | INFO     | time since job start (108238s) is within the limit (172800.0s)
[2025-11-26 16:36:05] 2025-11-26 21:35:30,515 | INFO     | monitor loop #6197: job 0:6896577584 is in state 'finished'
[2025-11-26 16:36:05] 2025-11-26 21:35:30,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,089 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 16:36:05] 2025-11-26 21:35:31,105 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2632.6922812499997
[2025-11-26 16:36:05] 2025-11-26 21:35:31,125 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896577584/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,125 | INFO     | extracted standard info from prmon json
[2025-11-26 16:36:05] 2025-11-26 21:35:31,125 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:36:05] 2025-11-26 21:35:31,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:36:05] 2025-11-26 21:35:31,156 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:36:05] 2025-11-26 21:35:31,159 | INFO     | sum of square deviations: 1725352727702.876
[2025-11-26 16:36:05] 2025-11-26 21:35:31,220 | INFO     | sum of deviations: 9300560763589.809
[2025-11-26 16:36:05] 2025-11-26 21:35:31,220 | INFO     | mean x: 1764138821.6117382
[2025-11-26 16:36:05] 2025-11-26 21:35:31,221 | INFO     | mean y: 2921361.230812641
[2025-11-26 16:36:05] 2025-11-26 21:35:31,221 | INFO     | intersect: -9506716895.55191
[2025-11-26 16:36:05] 2025-11-26 21:35:31,223 | INFO     | chi2: 17.35321217489895
[2025-11-26 16:36:05] 2025-11-26 21:35:31,225 | INFO     | sum of square deviations: 1710789650831.6775
[2025-11-26 16:36:05] 2025-11-26 21:35:31,284 | INFO     | sum of deviations: 9883222766878.191
[2025-11-26 16:36:05] 2025-11-26 21:35:31,284 | INFO     | mean x: 1764138669.114884
[2025-11-26 16:36:05] 2025-11-26 21:35:31,284 | INFO     | mean y: 2927461.7577815508
[2025-11-26 16:36:05] 2025-11-26 21:35:31,284 | INFO     | intersect: -10188492301.654066
[2025-11-26 16:36:05] 2025-11-26 21:35:31,286 | INFO     | chi2: 14.345675166253123
[2025-11-26 16:36:05] 2025-11-26 21:35:31,287 | INFO     | current chi2=14.345675166253123 (change=17.33129854192738 %)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,287 | INFO     | right removable region: 1766
[2025-11-26 16:36:05] 2025-11-26 21:35:31,289 | INFO     | sum of square deviations: 1710788449131.6802
[2025-11-26 16:36:05] 2025-11-26 21:35:31,448 | INFO     | sum of deviations: 8638111752708.348
[2025-11-26 16:36:05] 2025-11-26 21:35:31,449 | INFO     | mean x: 1764138974.114884
[2025-11-26 16:36:05] 2025-11-26 21:35:31,449 | INFO     | mean y: 2928296.559705716
[2025-11-26 16:36:05] 2025-11-26 21:35:31,449 | INFO     | intersect: -8904560886.832417
[2025-11-26 16:36:05] 2025-11-26 21:35:31,451 | INFO     | chi2: 13.883789040854785
[2025-11-26 16:36:05] 2025-11-26 21:35:31,452 | INFO     | current chi2=13.883789040854785 (change=19.992973629761824 %)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,452 | INFO     | left removable region: 10
[2025-11-26 16:36:05] 2025-11-26 21:35:31,473 | INFO     | sum of square deviations: 1679037451174.9197
[2025-11-26 16:36:05] 2025-11-26 21:35:31,530 | INFO     | sum of deviations: 8716194768575.051
[2025-11-26 16:36:05] 2025-11-26 21:35:31,531 | INFO     | mean x: 1764138943.621868
[2025-11-26 16:36:05] 2025-11-26 21:35:31,531 | INFO     | mean y: 2942537.305808656
[2025-11-26 16:36:05] 2025-11-26 21:35:31,531 | INFO     | intersect: -9155029859.722357
[2025-11-26 16:36:05] 2025-11-26 21:35:31,533 | INFO     | chi2: 7.030701605834752
[2025-11-26 16:36:05] 2025-11-26 21:35:31,533 | INFO     | current memory leak: 5.19 B/s (using 1756 data points, chi2=7.03)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,535 | INFO     | could have reported an average CPU frequency of 2701 MHz (63 samples)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,536 | INFO     | ..............................
[2025-11-26 16:36:05] 2025-11-26 21:35:31,536 | INFO     | . Timing measurements:
[2025-11-26 16:36:05] 2025-11-26 21:35:31,536 | INFO     | . get job = 0 s
[2025-11-26 16:36:05] 2025-11-26 21:35:31,536 | INFO     | . initial setup = 4 s
[2025-11-26 16:36:05] 2025-11-26 21:35:31,536 | INFO     | . payload setup = 30 s
[2025-11-26 16:36:05] 2025-11-26 21:35:31,536 | INFO     | . stage-in = 0 s
[2025-11-26 16:36:05] 2025-11-26 21:35:31,538 | INFO     | . payload execution = 108097 s
[2025-11-26 16:36:05] 2025-11-26 21:35:31,538 | INFO     | . stage-out = 6 s
[2025-11-26 16:36:05] 2025-11-26 21:35:31,538 | INFO     | . log creation = 2 s
[2025-11-26 16:36:05] 2025-11-26 21:35:31,538 | INFO     | ..............................
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | 
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | job summary report
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | --------------------------------------------------
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | PanDA job id: 6896577584
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | task id: 47556161
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | errors: (none)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | pilot state: finished 
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | transexitcode: 0
[2025-11-26 16:36:05] 2025-11-26 21:35:31,679 | INFO     | exeerrorcode: 0
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | exeerrordiag: 
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | exitcode: 0
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | exitmsg: OK
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | cpuconsumptiontime: 274840 s
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | nevents: 1000
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | neventsw: 0
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | pid: 1171958
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | pgrp: 1171958
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | corecount: 8
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | event service: False
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | sizes: {0: 2283433, 1: 2284289, 2: 2284289, 13: 2284317, 23: 2284373, 30: 2284663, 34: 2284819, 108131: 2359194, 108132: 2359193, 108139: 2368243, 108142: 2368299,
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | --------------------------------------------------
[2025-11-26 16:36:05] 2025-11-26 21:35:31,680 | INFO     | 
[2025-11-26 16:36:05] 2025-11-26 21:35:31,681 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 16:36:05] 2025-11-26 21:35:31,728 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,728 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,728 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,728 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,728 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,728 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,730 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,730 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,730 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:36:05] 2025-11-26 21:35:31,730 | INFO     | job 6896577584 has completed (purged errors)
[2025-11-26 16:36:05] 2025-11-26 21:35:31,752 | INFO     | overall cleanup function is called
[2025-11-26 16:36:05] 2025-11-26 21:35:32,785 | INFO     | --- collectZombieJob: --- 10, [1171958]
[2025-11-26 16:36:05] 2025-11-26 21:35:32,785 | INFO     | zombie collector waiting for pid 1171958
[2025-11-26 16:36:05] 2025-11-26 21:35:32,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:36:05] 2025-11-26 21:35:32,786 | INFO     | collected zombie processes
[2025-11-26 16:36:05] 2025-11-26 21:35:32,786 | INFO     | will attempt to kill all subprocesses of pid=1171958
[2025-11-26 16:36:05] 2025-11-26 21:35:33,933 | INFO     | process IDs to be killed: [1171958] (in reverse order)
[2025-11-26 16:36:05] 2025-11-26 21:35:34,168 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:36:05] 2025-11-26 21:35:34,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:36:05] 2025-11-26 21:35:34,230 | INFO     | did not find any defunct processes belonging to 1171958
[2025-11-26 16:36:05] 2025-11-26 21:35:34,262 | INFO     | did not find any defunct processes belonging to 1171958
[2025-11-26 16:36:05] 2025-11-26 21:35:34,263 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:36:05] 2025-11-26 21:35:34,264 | INFO     | ready for new job
[2025-11-26 16:36:05] 2025-11-26 21:35:34,265 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:36:05] 2025-11-26 21:35:34,275 | INFO     | ***************************************
[2025-11-26 16:36:05] 2025-11-26 21:35:34,275 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:36:05] 2025-11-26 21:35:34,275 | INFO     | ***************************************
[2025-11-26 16:36:05] 2025-11-26 21:35:34,275 | INFO     | 
[2025-11-26 16:36:05] 2025-11-26 21:35:34,282 | INFO     | architecture information:
[2025-11-26 16:36:05] 2025-11-26 21:35:34,283 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:36:05] 2025-11-26 21:35:34,357 | INFO     | cat /etc/os-release:
[2025-11-26 16:36:05] NAME="CentOS Linux"
[2025-11-26 16:36:05] VERSION="7 (Core)"
[2025-11-26 16:36:05] ID="centos"
[2025-11-26 16:36:05] ID_LIKE="rhel fedora"
[2025-11-26 16:36:05] VERSION_ID="7"
[2025-11-26 16:36:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:36:05] ANSI_COLOR="0;31"
[2025-11-26 16:36:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:36:05] HOME_URL="https://www.centos.org/"
[2025-11-26 16:36:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:36:05] 
[2025-11-26 16:36:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:36:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:36:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:36:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:36:05] 
[2025-11-26 16:36:05] 2025-11-26 21:35:34,363 | INFO     | ***************************************
[2025-11-26 16:36:05] 2025-11-26 21:35:34,868 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 16:36:05] 2025-11-26 21:35:34,926 | INFO     | sufficient remaining disk space (65391296512 B)
[2025-11-26 16:36:05] 2025-11-26 21:35:34,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:36:05] 2025-11-26 21:35:34,927 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:36:05] 2025-11-26 21:35:34,927 | INFO     | update_server=False
[2025-11-26 16:36:05] 2025-11-26 21:35:34,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:36:05] 2025-11-26 21:35:34,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:36:05] 2025-11-26 21:35:34,928 | INFO     | aborting loop
[2025-11-26 16:36:05] 2025-11-26 21:35:35,613 | INFO     | all data control threads have been joined
[2025-11-26 16:36:05] 2025-11-26 21:35:35,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:36:05] 2025-11-26 21:35:35,934 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:35,939 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:36,031 | INFO     | all payload control threads have been joined
[2025-11-26 16:36:05] 2025-11-26 21:35:36,184 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:36,220 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:36,301 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:36,302 | INFO     | [job] validate thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:36,366 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:36,546 | INFO     | all job control threads have been joined
[2025-11-26 16:36:05] 2025-11-26 21:35:36,630 | INFO     | [data] control thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:36,683 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:36,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:36:05] 2025-11-26 21:35:36,833 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:37,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:36:05] 2025-11-26 21:35:37,037 | INFO     | [payload] control thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:37,396 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:37,552 | INFO     | [job] control thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:37,655 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:37,731 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:41,042 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:36:05] 2025-11-26 21:35:45,953 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:36:05] 2025-11-26 21:35:46,609 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139994779887424)>', '<ExcThread(monitor, started 139994408654592)>']
[2025-11-26 16:36:05] 2025-11-26 21:35:51,635 | INFO     | all workflow threads have been joined
[2025-11-26 16:36:05] 2025-11-26 21:35:51,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:36:05] 2025-11-26 21:35:51,636 | INFO     | traces error code: 0
[2025-11-26 16:36:05] 2025-11-26 21:35:51,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:36:05] 2025-11-26 21:36:04,678 | INFO     | PID=1147489 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:36:05] 2025-11-26 21:36:04,679 | INFO     | .. there are 61 such processes running
[2025-11-26 16:36:05] 2025-11-26 21:36:04,680 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:36:05] 2025-11-26 21:36:04,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:36:05] 2025-11-26 21:36:04,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:36:05] 2025-11-26 21:36:04,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:36:05] 2025-11-26 21:36:04,680 | INFO     | [monitor] control thread has ended
[2025-11-26 16:36:05] 2025-11-26 21:36:04,925 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:36:05] 2025-11-26 21:36:04,929 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:36:05] 2025-11-26 21:36:04,934 [wrapper] pilotpid: 1147489
[2025-11-26 16:36:05] 2025-11-26 21:36:04,937 [wrapper] Pilot exit status: 0
[2025-11-26 16:36:05] 2025-11-26 21:36:04,959 [wrapper] pandaids: 6896577584
[2025-11-26 16:36:05] 2025-11-26 21:36:05,127 [wrapper] cleanup supervisor_pilot 2910121 1147490
[2025-11-26 16:36:05] 2025-11-26 21:36:05,138 [wrapper] Test setup, not cleaning
[2025-11-26 16:36:05] 2025-11-26 21:36:05,143 [wrapper] apfmon messages muted
[2025-11-26 16:36:05] 2025-11-26 21:36:05,155 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:36:05] 2025-11-26 21:36:05,167 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:36:05]  *** Error codes and diagnostics ***
[2025-11-26 16:36:05]     "exeErrorCode": 0,
[2025-11-26 16:36:05]     "exeErrorDiag": "",
[2025-11-26 16:36:05]     "pilotErrorCode": 0,
[2025-11-26 16:36:05]     "pilotErrorDiag": "",
[2025-11-26 16:36:05]  *** Listing of results directory ***
[2025-11-26 16:36:05] total 1340392
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:11 queuedata.json
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 16:36:05] -rwx------. 1 boincer umatlas     36292 Nov 25 00:17 runpilot2-wrapper.sh
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas       100 Nov 25 10:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:36:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 10:30 run_atlas
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas       105 Nov 25 10:30 job.xml
[2025-11-26 16:36:05] -rw-r--r--. 2 boincer umatlas 411622564 Nov 25 10:30 EVNT.47483658._002098.pool.root.1
[2025-11-26 16:36:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:30 start_atlas.sh
[2025-11-26 16:36:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 10:30 shared
[2025-11-26 16:36:05] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 10:30 input.tar.gz
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas         0 Nov 25 10:30 boinc_lockfile
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 10:30 pandaJob.out
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas        57 Nov 25 10:30 setup.sh.local
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas    991909 Nov 25 10:31 agis_schedconf.cvmfs.json
[2025-11-26 16:36:05] drwx------. 5 boincer umatlas      4096 Nov 25 10:31 pilot3
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas       533 Nov 26 16:15 boinc_task_state.xml
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas      6879 Nov 26 16:27 init_data.xml
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas 924993838 Nov 26 16:33 HITS.47556161._000815.pool.root.1
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas      1061 Nov 26 16:34 memory_monitor_summary.json
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas   2695101 Nov 26 16:34 log.47556161._000815.job.log.tgz.1
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas      8622 Nov 26 16:35 heartbeat.json
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 16:36 boinc_mmap_file
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas        29 Nov 26 16:36 wrapper_checkpoint.txt
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas        95 Nov 26 16:36 pilot_heartbeat.json
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas       823 Nov 26 16:36 pilotlog.txt
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas  13318313 Nov 26 16:36 log.47556161._000815.job.log.1
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas       353 Nov 26 16:36 output.list
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:36 runtime_log
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas  16035840 Nov 26 16:36 result.tar.gz
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas      9349 Nov 26 16:36 runtime_log.err
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas       664 Nov 26 16:36 J2wMDmcb0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd9LKDmIM03pm.diag
[2025-11-26 16:36:05] -rw-r--r--. 1 boincer umatlas     21841 Nov 26 16:36 stderr.txt
[2025-11-26 16:36:05] HITS file was successfully produced:
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas 924993838 Nov 26 16:33 shared/HITS.pool.root.1
[2025-11-26 16:36:05]  *** Contents of shared directory: ***
[2025-11-26 16:36:05] total 1321556
[2025-11-26 16:36:05] -rw-r--r--. 2 boincer umatlas 411622564 Nov 25 10:30 ATLAS.root_0
[2025-11-26 16:36:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:30 start_atlas.sh
[2025-11-26 16:36:05] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 10:30 input.tar.gz
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas 924993838 Nov 26 16:33 HITS.pool.root.1
[2025-11-26 16:36:05] -rw-------. 1 boincer umatlas  16035840 Nov 26 16:36 result.tar.gz
16:36:07 (1132628): run_atlas exited; CPU time 279920.804011
16:36:07 (1132628): called boinc_finish(0)

</stderr_txt>
]]>

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