Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:54:14 (241037): wrapper (7.7.26015): starting
23:54:14 (241037): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:54:14] Arguments: --nthreads 8
[2025-11-26 23:54:14] Threads: 8
[2025-11-26 23:54:14] Checking for CVMFS
[2025-11-26 23:54:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:54:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:54:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:54:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:54:17] 2.13.2.0 7693 34756 184260 153347 0 292 29820915 39288832 7846 16776704 0 30317242 99.643 27125629 31837 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 23:54:17] CVMFS is ok
[2025-11-26 23:54:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:54:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:54:17] Further information can be found at the LHC@home message board.
[2025-11-26 23:54:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:54:17] Checking for apptainer binary...
[2025-11-26 23:54:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:54:17] Running /usr/bin/apptainer --version
[2025-11-26 23:54:17] apptainer version 1.4.4-1.el9
[2025-11-26 23:54:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:54:18] c-210-18.aglt2.org
[2025-11-26 23:54:18] apptainer works
[2025-11-26 23:54:18] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:54:18] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:54:18] Starting ATLAS job with PandaID=6895884194
[2025-11-26 23:54:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:14:45]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:14:45] 2025-11-28 08:14:01,652 | INFO     | monitor loop #6479: job 0:6895884194 is in state 'finished'
[2025-11-28 03:14:45] 2025-11-28 08:14:01,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:14:45] 2025-11-28 08:14:03,045 | INFO     | time since job start (98320s) is within the limit (172800.0s)
[2025-11-28 03:14:45] 2025-11-28 08:14:04,160 | INFO     | monitor loop #6480: job 0:6895884194 is in state 'finished'
[2025-11-28 03:14:45] 2025-11-28 08:14:04,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:14:45] 2025-11-28 08:14:05,053 | INFO     | time since job start (98322s) is within the limit (172800.0s)
[2025-11-28 03:14:45] 2025-11-28 08:14:06,667 | INFO     | monitor loop #6481: job 0:6895884194 is in state 'finished'
[2025-11-28 03:14:45] 2025-11-28 08:14:06,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:14:45] 2025-11-28 08:14:07,060 | INFO     | time since job start (98324s) is within the limit (172800.0s)
[2025-11-28 03:14:45] 2025-11-28 08:14:09,079 | INFO     | time since job start (98326s) is within the limit (172800.0s)
[2025-11-28 03:14:45] 2025-11-28 08:14:09,177 | INFO     | monitor loop #6482: job 0:6895884194 is in state 'finished'
[2025-11-28 03:14:45] 2025-11-28 08:14:09,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:14:45] 2025-11-28 08:14:09,867 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 03:14:45] 2025-11-28 08:14:09,885 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.98185
[2025-11-28 03:14:45] 2025-11-28 08:14:09,937 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895884194/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:14:45] 2025-11-28 08:14:09,938 | INFO     | extracted standard info from prmon json
[2025-11-28 03:14:45] 2025-11-28 08:14:09,938 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:14:45] 2025-11-28 08:14:09,938 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:14:45] 2025-11-28 08:14:09,968 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:14:45] 2025-11-28 08:14:09,970 | INFO     | sum of square deviations: 1294116253447.1309
[2025-11-28 03:14:45] 2025-11-28 08:14:10,109 | INFO     | sum of deviations: 3281922478302.8457
[2025-11-28 03:14:45] 2025-11-28 08:14:10,109 | INFO     | mean x: 1764268526.557764
[2025-11-28 03:14:45] 2025-11-28 08:14:10,109 | INFO     | mean y: 2949217.447826087
[2025-11-28 03:14:45] 2025-11-28 08:14:10,109 | INFO     | intersect: -4471295286.97661
[2025-11-28 03:14:45] 2025-11-28 08:14:10,116 | INFO     | chi2: 18.827890810380026
[2025-11-28 03:14:45] 2025-11-28 08:14:10,118 | INFO     | sum of square deviations: 1282098655142.734
[2025-11-28 03:14:45] 2025-11-28 08:14:10,425 | INFO     | sum of deviations: 3851724539781.9736
[2025-11-28 03:14:45] 2025-11-28 08:14:10,425 | INFO     | mean x: 1764268374.0672898
[2025-11-28 03:14:45] 2025-11-28 08:14:10,426 | INFO     | mean y: 2956446.092834891
[2025-11-28 03:14:45] 2025-11-28 08:14:10,426 | INFO     | intersect: -5297318820.477579
[2025-11-28 03:14:45] 2025-11-28 08:14:10,450 | INFO     | chi2: 15.414913413979729
[2025-11-28 03:14:45] 2025-11-28 08:14:10,451 | INFO     | current chi2=15.414913413979729 (change=18.127242348987306 %)
[2025-11-28 03:14:45] 2025-11-28 08:14:10,451 | INFO     | right removable region: 1604
[2025-11-28 03:14:45] 2025-11-28 08:14:10,468 | INFO     | sum of square deviations: 1282095652112.7322
[2025-11-28 03:14:45] 2025-11-28 08:14:10,710 | INFO     | sum of deviations: 2672387043719.2754
[2025-11-28 03:14:45] 2025-11-28 08:14:10,711 | INFO     | mean x: 1764268679.0672898
[2025-11-28 03:14:45] 2025-11-28 08:14:10,711 | INFO     | mean y: 2956949.256697819
[2025-11-28 03:14:45] 2025-11-28 08:14:10,711 | INFO     | intersect: -3674466612.5576916
[2025-11-28 03:14:45] 2025-11-28 08:14:10,713 | INFO     | chi2: 15.339269348820133
[2025-11-28 03:14:45] 2025-11-28 08:14:10,713 | INFO     | current chi2=15.339269348820133 (change=18.529008356244432 %)
[2025-11-28 03:14:45] 2025-11-28 08:14:10,713 | INFO     | left removable region: 10
[2025-11-28 03:14:45] 2025-11-28 08:14:10,720 | INFO     | sum of square deviations: 1255916869116.8967
[2025-11-28 03:14:45] 2025-11-28 08:14:10,969 | INFO     | sum of deviations: 2935715007611.1753
[2025-11-28 03:14:45] 2025-11-28 08:14:10,969 | INFO     | mean x: 1764268648.58532
[2025-11-28 03:14:45] 2025-11-28 08:14:10,969 | INFO     | mean y: 2970762.3149309913
[2025-11-28 03:14:45] 2025-11-28 08:14:10,969 | INFO     | intersect: -4121020304.6668515
[2025-11-28 03:14:45] 2025-11-28 08:14:10,976 | INFO     | chi2: 9.641103196885624
[2025-11-28 03:14:45] 2025-11-28 08:14:10,976 | INFO     | current memory leak: 2.34 B/s (using 1594 data points, chi2=9.64)
[2025-11-28 03:14:45] 2025-11-28 08:14:10,977 | INFO     | could have reported an average CPU frequency of 2599 MHz (57 samples)
[2025-11-28 03:14:45] 2025-11-28 08:14:10,977 | INFO     | ..............................
[2025-11-28 03:14:45] 2025-11-28 08:14:10,978 | INFO     | . Timing measurements:
[2025-11-28 03:14:45] 2025-11-28 08:14:10,978 | INFO     | . get job = 0 s
[2025-11-28 03:14:45] 2025-11-28 08:14:10,978 | INFO     | . initial setup = 3 s
[2025-11-28 03:14:45] 2025-11-28 08:14:10,978 | INFO     | . payload setup = 42 s
[2025-11-28 03:14:45] 2025-11-28 08:14:10,978 | INFO     | . stage-in = 0 s
[2025-11-28 03:14:45] 2025-11-28 08:14:10,982 | INFO     | . payload execution = 98182 s
[2025-11-28 03:14:45] 2025-11-28 08:14:10,982 | INFO     | . stage-out = 6 s
[2025-11-28 03:14:45] 2025-11-28 08:14:10,982 | INFO     | . log creation = 2 s
[2025-11-28 03:14:45] 2025-11-28 08:14:10,983 | INFO     | ..............................
[2025-11-28 03:14:45] 2025-11-28 08:14:11,509 | INFO     | 
[2025-11-28 03:14:45] 2025-11-28 08:14:11,509 | INFO     | job summary report
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | --------------------------------------------------
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | PanDA job id: 6895884194
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | task id: 47556149
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | errors: (none)
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | pilot state: finished 
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | transexitcode: 0
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | exeerrorcode: 0
[2025-11-28 03:14:45] 2025-11-28 08:14:11,510 | INFO     | exeerrordiag: 
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | exitcode: 0
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | exitmsg: OK
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | cpuconsumptiontime: 304289 s
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | nevents: 1000
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | neventsw: 0
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | pid: 254992
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | pgrp: 254992
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | corecount: 8
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | event service: False
[2025-11-28 03:14:45] 2025-11-28 08:14:11,511 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 3: 2284371, 13: 2284399, 24: 2284455, 31: 2284873, 35: 2284901, 98229: 2358006, 98236: 2367056, 98269: 2367246}
[2025-11-28 03:14:45] 2025-11-28 08:14:11,512 | INFO     | --------------------------------------------------
[2025-11-28 03:14:45] 2025-11-28 08:14:11,512 | INFO     | 
[2025-11-28 03:14:45] 2025-11-28 08:14:11,512 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 03:14:45] 2025-11-28 08:14:11,574 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,574 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,574 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,574 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,575 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,576 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:14:45] 2025-11-28 08:14:11,576 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,576 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:14:45] 2025-11-28 08:14:11,576 | INFO     | job 6895884194 has completed (purged errors)
[2025-11-28 03:14:45] 2025-11-28 08:14:11,577 | INFO     | overall cleanup function is called
[2025-11-28 03:14:45] 2025-11-28 08:14:11,749 | INFO     | PID=245230 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 03:14:45] 2025-11-28 08:14:11,754 | INFO     | .. there are 9 such processes running
[2025-11-28 03:14:45] 2025-11-28 08:14:12,644 | INFO     | --- collectZombieJob: --- 10, [254992]
[2025-11-28 03:14:45] 2025-11-28 08:14:12,645 | INFO     | zombie collector waiting for pid 254992
[2025-11-28 03:14:45] 2025-11-28 08:14:12,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:14:45] 2025-11-28 08:14:12,645 | INFO     | collected zombie processes
[2025-11-28 03:14:45] 2025-11-28 08:14:12,645 | INFO     | will attempt to kill all subprocesses of pid=254992
[2025-11-28 03:14:45] 2025-11-28 08:14:13,156 | INFO     | process IDs to be killed: [254992] (in reverse order)
[2025-11-28 03:14:45] 2025-11-28 08:14:13,313 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:14:45] 2025-11-28 08:14:13,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:14:45] 2025-11-28 08:14:13,329 | INFO     | did not find any defunct processes belonging to 254992
[2025-11-28 03:14:45] 2025-11-28 08:14:13,345 | INFO     | did not find any defunct processes belonging to 254992
[2025-11-28 03:14:45] 2025-11-28 08:14:13,372 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:14:45] 2025-11-28 08:14:13,373 | INFO     | ready for new job
[2025-11-28 03:14:45] 2025-11-28 08:14:13,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:14:45] 2025-11-28 08:14:13,388 | INFO     | ***************************************
[2025-11-28 03:14:45] 2025-11-28 08:14:13,389 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:14:45] 2025-11-28 08:14:13,389 | INFO     | ***************************************
[2025-11-28 03:14:45] 2025-11-28 08:14:13,389 | INFO     | 
[2025-11-28 03:14:45] 2025-11-28 08:14:13,391 | INFO     | architecture information:
[2025-11-28 03:14:45] 2025-11-28 08:14:13,395 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:14:45] 2025-11-28 08:14:13,451 | INFO     | cat /etc/os-release:
[2025-11-28 03:14:45] NAME="CentOS Linux"
[2025-11-28 03:14:45] VERSION="7 (Core)"
[2025-11-28 03:14:45] ID="centos"
[2025-11-28 03:14:45] ID_LIKE="rhel fedora"
[2025-11-28 03:14:45] VERSION_ID="7"
[2025-11-28 03:14:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:14:45] ANSI_COLOR="0;31"
[2025-11-28 03:14:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:14:45] HOME_URL="https://www.centos.org/"
[2025-11-28 03:14:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:14:45] 
[2025-11-28 03:14:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:14:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:14:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:14:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:14:45] 
[2025-11-28 03:14:45] 2025-11-28 08:14:13,452 | INFO     | ***************************************
[2025-11-28 03:14:45] 2025-11-28 08:14:13,954 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 03:14:45] 2025-11-28 08:14:13,995 | INFO     | sufficient remaining disk space (48053092352 B)
[2025-11-28 03:14:45] 2025-11-28 08:14:13,996 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:14:45] 2025-11-28 08:14:13,996 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:14:45] 2025-11-28 08:14:13,997 | INFO     | update_server=False
[2025-11-28 03:14:45] 2025-11-28 08:14:13,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:14:45] 2025-11-28 08:14:13,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:14:45] 2025-11-28 08:14:14,022 | INFO     | all data control threads have been joined
[2025-11-28 03:14:45] 2025-11-28 08:14:14,156 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:14:45] 2025-11-28 08:14:14,227 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 03:14:45] 2025-11-28 08:14:14,228 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 03:14:45] 2025-11-28 08:14:14,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:14:45] 2025-11-28 08:14:14,228 | INFO     | will abort loop
[2025-11-28 03:14:45] 2025-11-28 08:14:14,853 | INFO     | all payload control threads have been joined
[2025-11-28 03:14:45] 2025-11-28 08:14:15,002 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:15,029 | INFO     | [data] control thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:15,233 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:15,423 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:15,478 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:14:45] 2025-11-28 08:14:15,517 | INFO     | all job control threads have been joined
[2025-11-28 03:14:45] 2025-11-28 08:14:15,527 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:15,528 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:15,670 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:15,859 | INFO     | [payload] control thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:16,004 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:16,083 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:16,178 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:16,452 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:16,453 | INFO     | [job] validate thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:16,525 | INFO     | [job] control thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:16,547 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:14:45] 2025-11-28 08:14:17,553 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:19,487 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:14:45] 2025-11-28 08:14:20,700 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140210629547840)>', '<ExcThread(monitor, started 140210121721600)>']
[2025-11-28 03:14:45] 2025-11-28 08:14:25,726 | INFO     | all workflow threads have been joined
[2025-11-28 03:14:45] 2025-11-28 08:14:25,726 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:14:45] 2025-11-28 08:14:25,727 | INFO     | traces error code: 0
[2025-11-28 03:14:45] 2025-11-28 08:14:25,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:14:45] 2025-11-28 08:14:42,845 | INFO     | 98333s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 03:14:45] 2025-11-28 08:14:44,196 | INFO     | PID=245230 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 03:14:45] 2025-11-28 08:14:44,196 | INFO     | .. there are 8 such processes running
[2025-11-28 03:14:45] 2025-11-28 08:14:44,197 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:14:45] 2025-11-28 08:14:44,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:14:45] 2025-11-28 08:14:44,197 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:14:45] 2025-11-28 08:14:44,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:14:45] 2025-11-28 08:14:44,197 | INFO     | [monitor] control thread has ended
[2025-11-28 03:14:45] 2025-11-28 08:14:44,482 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:14:45] 2025-11-28 08:14:44,532 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:14:45] 2025-11-28 08:14:44,579 [wrapper] pilotpid: 245230
[2025-11-28 03:14:45] 2025-11-28 08:14:44,639 [wrapper] Pilot exit status: 0
[2025-11-28 03:14:45] 2025-11-28 08:14:44,965 [wrapper] pandaids: 6895884194
[2025-11-28 03:14:45] 2025-11-28 08:14:45,367 [wrapper] cleanup supervisor_pilot 2636910 245231
[2025-11-28 03:14:45] 2025-11-28 08:14:45,400 [wrapper] Test setup, not cleaning
[2025-11-28 03:14:45] 2025-11-28 08:14:45,419 [wrapper] apfmon messages muted
[2025-11-28 03:14:45] 2025-11-28 08:14:45,443 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:14:45] 2025-11-28 08:14:45,461 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:14:45]  *** Error codes and diagnostics ***
[2025-11-28 03:14:45]     "exeErrorCode": 0,
[2025-11-28 03:14:45]     "exeErrorDiag": "",
[2025-11-28 03:14:45]     "pilotErrorCode": 0,
[2025-11-28 03:14:45]     "pilotErrorDiag": "",
[2025-11-28 03:14:45]  *** Listing of results directory ***
[2025-11-28 03:14:46] total 1332156
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:11 queuedata.json
[2025-11-28 03:14:46] -rwx------. 1 boincer umatlas     36292 Nov 24 12:15 runpilot2-wrapper.sh
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas       100 Nov 26 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:14:46] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 23:54 run_atlas
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas       105 Nov 26 23:54 job.xml
[2025-11-28 03:14:46] -rw-r--r--. 2 boincer umatlas 411199484 Nov 26 23:54 EVNT.47483658._001403.pool.root.1
[2025-11-28 03:14:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:54 start_atlas.sh
[2025-11-28 03:14:46] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 23:54 shared
[2025-11-28 03:14:46] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 23:54 input.tar.gz
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas         0 Nov 26 23:54 boinc_lockfile
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 23:54 pandaJob.out
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas        57 Nov 26 23:54 setup.sh.local
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas    991570 Nov 26 23:55 agis_schedconf.cvmfs.json
[2025-11-28 03:14:46] drwx------. 5 boincer umatlas      4096 Nov 26 23:55 pilot3
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas       533 Nov 28 02:32 boinc_task_state.xml
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas      6660 Nov 28 03:09 init_data.xml
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas 917439985 Nov 28 03:12 HITS.47556149._003897.pool.root.1
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas      1062 Nov 28 03:13 memory_monitor_summary.json
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas   1516240 Nov 28 03:13 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas   2638822 Nov 28 03:13 log.47556149._003897.job.log.tgz.1
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas        95 Nov 28 03:13 pilot_heartbeat.json
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas      8633 Nov 28 03:14 heartbeat.json
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 03:14 boinc_mmap_file
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas        29 Nov 28 03:14 wrapper_checkpoint.txt
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas       937 Nov 28 03:14 pilotlog.txt
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas  13144205 Nov 28 03:14 log.47556149._003897.job.log.1
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas       353 Nov 28 03:14 output.list
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas       620 Nov 28 03:14 runtime_log
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas  15800320 Nov 28 03:14 result.tar.gz
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas      9343 Nov 28 03:14 runtime_log.err
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas       661 Nov 28 03:14 7piKDm5Kph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0nLKDmfDr1wm.diag
[2025-11-28 03:14:46] -rw-r--r--. 1 boincer umatlas     21856 Nov 28 03:14 stderr.txt
[2025-11-28 03:14:46] HITS file was successfully produced:
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas 917439985 Nov 28 03:12 shared/HITS.pool.root.1
[2025-11-28 03:14:46]  *** Contents of shared directory: ***
[2025-11-28 03:14:46] total 1313540
[2025-11-28 03:14:46] -rw-r--r--. 2 boincer umatlas 411199484 Nov 26 23:54 ATLAS.root_0
[2025-11-28 03:14:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 23:54 start_atlas.sh
[2025-11-28 03:14:46] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 23:54 input.tar.gz
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas 917439985 Nov 28 03:12 HITS.pool.root.1
[2025-11-28 03:14:46] -rw-------. 1 boincer umatlas  15800320 Nov 28 03:14 result.tar.gz
03:14:48 (241037): run_atlas exited; CPU time 305833.073149
03:14:48 (241037): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN