Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:06:52 (2706148): wrapper (7.7.26015): starting
07:06:52 (2706148): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 07:06:52] Arguments: --nthreads 12
[2025-11-25 07:06:52] Threads: 12
[2025-11-25 07:06:52] Checking for CVMFS
[2025-11-25 07:06:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:06:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:06:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:06:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:06:54] 2.11.5.0 2756331 27061 318792 153285 2 447 26878660 45568001 16010 130560 0 199796206 99.792 119523084 23555 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-25 07:06:54] CVMFS is ok
[2025-11-25 07:06:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 07:06:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 07:06:54] Further information can be found at the LHC@home message board.
[2025-11-25 07:06:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:06:54] Checking for apptainer binary...
[2025-11-25 07:06:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:06:54] Running /usr/bin/apptainer --version
[2025-11-25 07:06:54] apptainer version 1.4.1-1.el9
[2025-11-25 07:06:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:06:54] wns0075.triumf.lcg
[2025-11-25 07:06:54] apptainer works
[2025-11-25 07:06:54] Set ATHENA_PROC_NUMBER=12
[2025-11-25 07:06:54] Set ATHENA_CORE_NUMBER=12
[2025-11-25 07:06:54] Starting ATLAS job with PandaID=6896558418
[2025-11-25 07:06:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 07:13:18]  *** The last 200 lines of the pilot log: ***
[2025-11-25 07:13:18] 2025-11-25 15:12:31,222 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 07:13:18] 2025-11-25 15:12:31,223 | WARNING  | wrong length of table data, x=[1764083290.0, 1764083351.0, 1764083412.0], y=[1121.0, 761338.0, 765762.0] (must be same and length>=4)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,224 | INFO     | could have reported an average CPU frequency of 1215 MHz (4 samples)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,224 | INFO     | ..............................
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . Timing measurements:
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . get job = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . initial setup = 3 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . payload setup = 14 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . stage-in = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . payload execution = 146 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . stage-out = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . log creation = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | ..............................
[2025-11-25 07:13:18] 2025-11-25 15:12:31,226 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 07:13:18] 2025-11-25 15:12:31,226 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896558418/pilotlog.txt
[2025-11-25 07:13:18] 2025-11-25 15:12:31,247 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 07:13:18] - Log from pilotlog.txt -
[2025-11-25 07:13:18] 2025-11-25 15:12:31,220 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896558418/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,221 | INFO     | extracted standard info from prmon json
[2025-11-25 07:13:18] 2025-11-25 15:12:31,221 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 07:13:18] 2025-11-25 15:12:31,222 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 07:13:18] 2025-11-25 15:12:31,222 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 07:13:18] 2025-11-25 15:12:31,222 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 07:13:18] 2025-11-25 15:12:31,223 | WARNING  | wrong length of table data, x=[1764083290.0, 1764083351.0, 1764083412.0], y=[1121.0, 761338.0, 765762.0] (must be same and length>=4)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,224 | INFO     | could have reported an average CPU frequency of 1215 MHz (4 samples)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,224 | INFO     | ..............................
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . Timing measurements:
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . get job = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . initial setup = 3 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . payload setup = 14 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . stage-in = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . payload execution = 146 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . stage-out = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . log creation = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | ..............................
[2025-11-25 07:13:18] 2025-11-25 15:12:31,226 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 07:13:18] 2025-11-25 15:12:31,226 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896558418/pilotlog.txt
[2025-11-25 07:13:18] 2025-11-25 15:12:31,248 | WARNING  | 
[2025-11-25 07:13:18] [begin log extracts]
[2025-11-25 07:13:18] - Log from pilotlog.txt -
[2025-11-25 07:13:18] 2025-11-25 15:12:31,220 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896558418/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,221 | INFO     | extracted standard info from prmon json
[2025-11-25 07:13:18] 2025-11-25 15:12:31,221 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 07:13:18] 2025-11-25 15:12:31,222 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 07:13:18] 2025-11-25 15:12:31,222 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 07:13:18] 2025-11-25 15:12:31,222 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 07:13:18] 2025-11-25 15:12:31,223 | WARNING  | wrong length of table data, x=[1764083290.0, 1764083351.0, 1764083412.0], y=[1121.0, 761338.0, 765762.0] (must be same and length>=4)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,224 | INFO     | could have reported an average CPU frequency of 1215 MHz (4 samples)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,224 | INFO     | ..............................
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . Timing measurements:
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . get job = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . initial setup = 3 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . payload setup = 14 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . stage-in = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . payload execution = 146 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . stage-out = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | . log creation = 0 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,225 | INFO     | ..............................
[2025-11-25 07:13:18] 2025-11-25 15:12:31,226 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 07:13:18] 2025-11-25 15:12:31,226 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896558418/pilotlog.txt
[2025-11-25 07:13:18] [end log extracts]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,248 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,250 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 07:13:18] 2025-11-25 15:12:31,570 | INFO     | 
[2025-11-25 07:13:18] 2025-11-25 15:12:31,570 | INFO     | job summary report
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | --------------------------------------------------
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | PanDA job id: 6896558418
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | task id: 47556161
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 07:10:16,927 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | pilot state: failed 
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | transexitcode: 65
[2025-11-25 07:13:18] 2025-11-25 15:12:31,571 | INFO     | exeerrorcode: 65
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | exitcode: 65
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | cpuconsumptiontime: 82 s
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | nevents: 0
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | neventsw: 0
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | pid: 2716479
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | pgrp: 2716479
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | corecount: 12
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | event service: False
[2025-11-25 07:13:18] 2025-11-25 15:12:31,572 | INFO     | sizes: {0: 2284037, 1: 2284236, 10: 2284498, 12: 2284526, 164: 2309978, 165: 2314268, 168: 2314424, 291: 2314590}
[2025-11-25 07:13:18] 2025-11-25 15:12:31,573 | INFO     | --------------------------------------------------
[2025-11-25 07:13:18] 2025-11-25 15:12:31,573 | INFO     | 
[2025-11-25 07:13:18] 2025-11-25 15:12:31,573 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 07:13:18] 2025-11-25 15:12:31,605 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,606 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,606 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,606 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,606 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,607 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,607 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,607 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,608 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,609 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,609 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,609 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 07:13:18] 2025-11-25 15:12:31,609 | INFO     | job 6896558418 has completed (purged errors)
[2025-11-25 07:13:18] 2025-11-25 15:12:31,609 | INFO     | overall cleanup function is called
[2025-11-25 07:13:18] 2025-11-25 15:12:32,619 | INFO     | --- collectZombieJob: --- 10, [2716479]
[2025-11-25 07:13:18] 2025-11-25 15:12:32,619 | INFO     | zombie collector waiting for pid 2716479
[2025-11-25 07:13:18] 2025-11-25 15:12:32,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 07:13:18] 2025-11-25 15:12:32,620 | INFO     | collected zombie processes
[2025-11-25 07:13:18] 2025-11-25 15:12:32,620 | INFO     | will attempt to kill all subprocesses of pid=2716479
[2025-11-25 07:13:18] 2025-11-25 15:12:33,185 | INFO     | process IDs to be killed: [2716479] (in reverse order)
[2025-11-25 07:13:18] 2025-11-25 15:12:33,313 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 07:13:18] 2025-11-25 15:12:33,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 07:13:18] 2025-11-25 15:12:33,353 | INFO     | did not find any defunct processes belonging to 2716479
[2025-11-25 07:13:18] 2025-11-25 15:12:33,380 | INFO     | did not find any defunct processes belonging to 2716479
[2025-11-25 07:13:18] 2025-11-25 15:12:33,384 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 07:13:18] 2025-11-25 15:12:33,384 | INFO     | ready for new job
[2025-11-25 07:13:18] 2025-11-25 15:12:33,385 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 07:13:18] 2025-11-25 15:12:33,386 | INFO     | ***************************************
[2025-11-25 07:13:18] 2025-11-25 15:12:33,387 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 07:13:18] 2025-11-25 15:12:33,387 | INFO     | ***************************************
[2025-11-25 07:13:18] 2025-11-25 15:12:33,387 | INFO     | 
[2025-11-25 07:13:18] 2025-11-25 15:12:33,403 | INFO     | architecture information:
[2025-11-25 07:13:18] 2025-11-25 15:12:33,408 | INFO     | executing command: cat /etc/os-release
[2025-11-25 07:13:18] 2025-11-25 15:12:33,488 | INFO     | cat /etc/os-release:
[2025-11-25 07:13:18] NAME="CentOS Linux"
[2025-11-25 07:13:18] VERSION="7 (Core)"
[2025-11-25 07:13:18] ID="centos"
[2025-11-25 07:13:18] ID_LIKE="rhel fedora"
[2025-11-25 07:13:18] VERSION_ID="7"
[2025-11-25 07:13:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 07:13:18] ANSI_COLOR="0;31"
[2025-11-25 07:13:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 07:13:18] HOME_URL="https://www.centos.org/"
[2025-11-25 07:13:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 07:13:18] 
[2025-11-25 07:13:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 07:13:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 07:13:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 07:13:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 07:13:18] 
[2025-11-25 07:13:18] 2025-11-25 15:12:33,489 | INFO     | ***************************************
[2025-11-25 07:13:18] 2025-11-25 15:12:33,992 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 07:13:18] 2025-11-25 15:12:34,186 | INFO     | sufficient remaining disk space (2077759635456 B)
[2025-11-25 07:13:18] 2025-11-25 15:12:34,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 07:13:18] 2025-11-25 15:12:34,187 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 07:13:18] 2025-11-25 15:12:34,187 | INFO     | update_server=False
[2025-11-25 07:13:18] 2025-11-25 15:12:34,187 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 07:13:18] 2025-11-25 15:12:34,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 07:13:18] 2025-11-25 15:12:34,567 | INFO     | all job control threads have been joined
[2025-11-25 07:13:18] 2025-11-25 15:12:34,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:13:18] 2025-11-25 15:12:34,794 | INFO     | aborting loop
[2025-11-25 07:13:18] 2025-11-25 15:12:34,978 | INFO     | all payload control threads have been joined
[2025-11-25 07:13:18] 2025-11-25 15:12:35,093 | INFO     | all data control threads have been joined
[2025-11-25 07:13:18] 2025-11-25 15:12:35,192 | INFO     | [job] retrieve thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:35,404 | INFO     | [job] validate thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:35,515 | INFO     | [payload] failed_post thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:35,557 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:35,573 | INFO     | [job] control thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:35,644 | INFO     | [payload] validate_post thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:35,764 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:35,799 | INFO     | [job] job monitor thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:35,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 07:13:18] 2025-11-25 15:12:35,984 | INFO     | [payload] control thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:36,065 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:36,080 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:36,099 | INFO     | [data] control thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:36,195 | INFO     | [data] copytool_out thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:36,372 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:13:18] 2025-11-25 15:12:36,492 | INFO     | [data] copytool_in thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:37,378 | INFO     | [job] queue monitor thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:12:39,867 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 07:13:18] 2025-11-25 15:13:03,383 | INFO     | PID=2709806 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 07:13:18] 2025-11-25 15:13:03,383 | INFO     | .. there are 14 such processes running
[2025-11-25 07:13:18] 2025-11-25 15:13:03,383 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 07:13:18] 2025-11-25 15:13:03,383 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 07:13:18] 2025-11-25 15:13:03,383 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 07:13:18] 2025-11-25 15:13:11,728 | INFO     | [monitor] cgroup control has ended
[2025-11-25 07:13:18] 2025-11-25 15:13:13,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140111433672512)>', '<ExcThread(monitor, started 140110733494016)>']
[2025-11-25 07:13:18] 2025-11-25 15:13:13,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 07:13:18] 2025-11-25 15:13:13,443 | INFO     | [monitor] control thread has ended
[2025-11-25 07:13:18] 2025-11-25 15:13:18,224 | INFO     | all workflow threads have been joined
[2025-11-25 07:13:18] 2025-11-25 15:13:18,225 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 07:13:18] 2025-11-25 15:13:18,225 | INFO     | traces error code: 0
[2025-11-25 07:13:18] 2025-11-25 15:13:18,225 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 07:13:18] 2025-11-25 15:13:18,377 [wrapper] ==== pilot stdout END ====
[2025-11-25 07:13:18] 2025-11-25 15:13:18,380 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 07:13:18] 2025-11-25 15:13:18,383 [wrapper] pilotpid: 2709806
[2025-11-25 07:13:18] 2025-11-25 15:13:18,386 [wrapper] Pilot exit status: 0
[2025-11-25 07:13:18] 2025-11-25 15:13:18,428 [wrapper] pandaids: 6896558418
[2025-11-25 07:13:18] 2025-11-25 15:13:18,502 [wrapper] cleanup supervisor_pilot 2709812 2709807
[2025-11-25 07:13:18] 2025-11-25 15:13:18,506 [wrapper] Test setup, not cleaning
[2025-11-25 07:13:18] 2025-11-25 15:13:18,510 [wrapper] apfmon messages muted
[2025-11-25 07:13:18] 2025-11-25 15:13:18,514 [wrapper] ==== wrapper stdout END ====
[2025-11-25 07:13:18] 2025-11-25 15:13:18,517 [wrapper] ==== wrapper stderr END ====
[2025-11-25 07:13:18]  *** Error codes and diagnostics ***
[2025-11-25 07:13:18]     "exeErrorCode": 65,
[2025-11-25 07:13:18]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 07:13:18]     "pilotErrorCode": 1305,
[2025-11-25 07:13:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 07:13:18]  *** Listing of results directory ***
[2025-11-25 07:13:18] total 403344
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc    576529 Nov 24 20:09 pilot3.tar.gz
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc      5112 Nov 24 20:58 queuedata.json
[2025-11-25 07:13:18] -rwx------. 1 boinc boinc     36292 Nov 24 20:59 runpilot2-wrapper.sh
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc       100 Nov 25 07:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 07:13:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 07:06 run_atlas
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc       105 Nov 25 07:06 job.xml
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc      6594 Nov 25 07:06 init_data.xml
[2025-11-25 07:13:18] -rw-r--r--. 2 boinc boinc 408801381 Nov 25 07:06 EVNT.47483658._002086.pool.root.1
[2025-11-25 07:13:18] drwxrwx--x. 2 boinc boinc      4096 Nov 25 07:06 shared
[2025-11-25 07:13:18] -rw-r--r--. 2 boinc boinc    590102 Nov 25 07:06 input.tar.gz
[2025-11-25 07:13:18] -rw-r--r--. 2 boinc boinc     15847 Nov 25 07:06 start_atlas.sh
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc         0 Nov 25 07:06 boinc_lockfile
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc      2783 Nov 25 07:06 pandaJob.out
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc    991909 Nov 25 07:07 agis_schedconf.cvmfs.json
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc   1516240 Nov 25 07:07 agis_ddmendpoints.agis.ALL.json
[2025-11-25 07:13:18] drwx------. 5 boinc boinc      4096 Nov 25 07:07 pilot3
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc      1020 Nov 25 07:10 memory_monitor_summary.json
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc       524 Nov 25 07:10 boinc_task_state.xml
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc     49282 Nov 25 07:10 log.47556161._000699.job.log.tgz.1
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc        95 Nov 25 07:12 pilot_heartbeat.json
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc     10341 Nov 25 07:12 heartbeat.json
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc      8192 Nov 25 07:13 boinc_mmap_file
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc      4823 Nov 25 07:13 pilotlog.txt
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc        23 Nov 25 07:13 wrapper_checkpoint.txt
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc    106446 Nov 25 07:13 log.47556161._000699.job.log.1
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc       186 Nov 25 07:13 output.list
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc       620 Nov 25 07:13 runtime_log
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc    174080 Nov 25 07:13 result.tar.gz
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc      8636 Nov 25 07:13 runtime_log.err
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc       644 Nov 25 07:13 7AUMDmcK0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmU8LKDmENI5So.diag
[2025-11-25 07:13:18] -rw-r--r--. 1 boinc boinc     22560 Nov 25 07:13 stderr.txt
[2025-11-25 07:13:18] No HITS result produced
[2025-11-25 07:13:18]  *** Contents of shared directory: ***
[2025-11-25 07:13:18] total 399992
[2025-11-25 07:13:18] -rw-r--r--. 2 boinc boinc 408801381 Nov 25 07:06 ATLAS.root_0
[2025-11-25 07:13:18] -rw-r--r--. 2 boinc boinc    590102 Nov 25 07:06 input.tar.gz
[2025-11-25 07:13:18] -rw-r--r--. 2 boinc boinc     15847 Nov 25 07:06 start_atlas.sh
[2025-11-25 07:13:18] -rw-------. 1 boinc boinc    174080 Nov 25 07:13 result.tar.gz
07:13:20 (2706148): run_atlas exited; CPU time 78.850106
07:13:20 (2706148): called boinc_finish(0)

</stderr_txt>
]]>

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