Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:28:51 (516910): wrapper (7.7.26015): starting
10:28:51 (516910): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 10:28:51] Arguments: --nthreads 8
[2025-11-25 10:28:51] Threads: 8
[2025-11-25 10:28:51] Checking for CVMFS
[2025-11-25 10:28:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:28:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:28:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:29:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:29:13] 2.13.2.0 10481 33144 298532 153287 1 92 28397864 40960000 21849 16776704 0 62844036 99.786 35391080 33810 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 10:29:13] CVMFS is ok
[2025-11-25 10:29:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:29:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:29:13] Further information can be found at the LHC@home message board.
[2025-11-25 10:29:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:29:13] Checking for apptainer binary...
[2025-11-25 10:29:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:29:13] Running /usr/bin/apptainer --version
[2025-11-25 10:29:13] apptainer version 1.4.4-1.el9
[2025-11-25 10:29:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:29:14] c-211-35-3.aglt2.org
[2025-11-25 10:29:14] apptainer works
[2025-11-25 10:29:14] Set ATHENA_PROC_NUMBER=8
[2025-11-25 10:29:14] Set ATHENA_CORE_NUMBER=8
[2025-11-25 10:29:14] Starting ATLAS job with PandaID=6895384307
[2025-11-25 10:29:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:53:40]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:53:40] 2025-11-26 18:52:56,204 | INFO     | time since job start (98550s) is within the limit (172800.0s)
[2025-11-26 13:53:40] 2025-11-26 18:52:56,300 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 13:53:40] 2025-11-26 18:52:58,211 | INFO     | time since job start (98552s) is within the limit (172800.0s)
[2025-11-26 13:53:40] 2025-11-26 18:52:58,349 | INFO     | monitor loop #5861: job 0:6895384307 is in state 'finished'
[2025-11-26 13:53:40] 2025-11-26 18:52:58,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:53:40] 2025-11-26 18:52:59,725 | INFO     | PID=522134 has CPU usage=19.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:53:40] 2025-11-26 18:52:59,725 | INFO     | .. there are 20 such processes running
[2025-11-26 13:53:40] 2025-11-26 18:53:00,726 | INFO     | time since job start (98554s) is within the limit (172800.0s)
[2025-11-26 13:53:40] 2025-11-26 18:53:00,862 | INFO     | monitor loop #5862: job 0:6895384307 is in state 'finished'
[2025-11-26 13:53:40] 2025-11-26 18:53:00,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:53:40] 2025-11-26 18:53:02,733 | INFO     | time since job start (98556s) is within the limit (172800.0s)
[2025-11-26 13:53:40] 2025-11-26 18:53:03,369 | INFO     | monitor loop #5863: job 0:6895384307 is in state 'finished'
[2025-11-26 13:53:40] 2025-11-26 18:53:03,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:53:40] 2025-11-26 18:53:04,739 | INFO     | time since job start (98558s) is within the limit (172800.0s)
[2025-11-26 13:53:40] 2025-11-26 18:53:05,874 | INFO     | monitor loop #5864: job 0:6895384307 is in state 'finished'
[2025-11-26 13:53:40] 2025-11-26 18:53:05,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:53:40] 2025-11-26 18:53:06,746 | INFO     | time since job start (98560s) is within the limit (172800.0s)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,378 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 13:53:40] 2025-11-26 18:53:07,392 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2571.2915729166666
[2025-11-26 13:53:40] 2025-11-26 18:53:07,410 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895384307/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,411 | INFO     | extracted standard info from prmon json
[2025-11-26 13:53:40] 2025-11-26 18:53:07,411 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:53:40] 2025-11-26 18:53:07,411 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:53:40] 2025-11-26 18:53:07,440 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:53:40] 2025-11-26 18:53:07,445 | INFO     | sum of square deviations: 1301525994175.067
[2025-11-26 13:53:40] 2025-11-26 18:53:07,499 | INFO     | sum of deviations: 603131515358.5828
[2025-11-26 13:53:40] 2025-11-26 18:53:07,499 | INFO     | mean x: 1764133948.7284563
[2025-11-26 13:53:40] 2025-11-26 18:53:07,499 | INFO     | mean y: 2859066.3118412895
[2025-11-26 13:53:40] 2025-11-26 18:53:07,499 | INFO     | intersect: -814646528.3163334
[2025-11-26 13:53:40] 2025-11-26 18:53:07,501 | INFO     | chi2: 47.1002396949341
[2025-11-26 13:53:40] 2025-11-26 18:53:07,504 | INFO     | sum of square deviations: 1289464120586.8945
[2025-11-26 13:53:40] 2025-11-26 18:53:07,555 | INFO     | sum of deviations: 1112637773427.687
[2025-11-26 13:53:40] 2025-11-26 18:53:07,555 | INFO     | mean x: 1764133796.2419155
[2025-11-26 13:53:40] 2025-11-26 18:53:07,555 | INFO     | mean y: 2865507.630597015
[2025-11-26 13:53:40] 2025-11-26 18:53:07,555 | INFO     | intersect: -1519349703.8991024
[2025-11-26 13:53:40] 2025-11-26 18:53:07,557 | INFO     | chi2: 43.85468504684334
[2025-11-26 13:53:40] 2025-11-26 18:53:07,557 | INFO     | current chi2=43.85468504684334 (change=6.890739132352733 %)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,558 | INFO     | right removable region: 1607
[2025-11-26 13:53:40] 2025-11-26 18:53:07,560 | INFO     | sum of square deviations: 1289459172870.4783
[2025-11-26 13:53:40] 2025-11-26 18:53:07,611 | INFO     | sum of deviations: -15715743800.349533
[2025-11-26 13:53:40] 2025-11-26 18:53:07,611 | INFO     | mean x: 1764134101.2462687
[2025-11-26 13:53:40] 2025-11-26 18:53:07,611 | INFO     | mean y: 2866887.3165422888
[2025-11-26 13:53:40] 2025-11-26 18:53:07,611 | INFO     | intersect: 24367901.18961285
[2025-11-26 13:53:40] 2025-11-26 18:53:07,613 | INFO     | chi2: 43.466653843440504
[2025-11-26 13:53:40] 2025-11-26 18:53:07,614 | INFO     | current chi2=43.466653843440504 (change=7.714580382240416 %)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,614 | INFO     | left removable region: 10
[2025-11-26 13:53:40] 2025-11-26 18:53:07,616 | INFO     | sum of square deviations: 1263181185580.732
[2025-11-26 13:53:40] 2025-11-26 18:53:07,665 | INFO     | sum of deviations: 181697689894.99658
[2025-11-26 13:53:40] 2025-11-26 18:53:07,665 | INFO     | mean x: 1764134070.7814653
[2025-11-26 13:53:40] 2025-11-26 18:53:07,665 | INFO     | mean y: 2879986.0945522855
[2025-11-26 13:53:40] 2025-11-26 18:53:07,666 | INFO     | intersect: -250875444.23089606
[2025-11-26 13:53:40] 2025-11-26 18:53:07,668 | INFO     | chi2: 37.990193886667114
[2025-11-26 13:53:40] 2025-11-26 18:53:07,668 | INFO     | current memory leak: 0.14 B/s (using 1597 data points, chi2=37.99)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,669 | INFO     | could have reported an average CPU frequency of 2621 MHz (57 samples)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | ..............................
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | . Timing measurements:
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | . get job = 0 s
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | . initial setup = 6 s
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | . payload setup = 43 s
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | . stage-in = 0 s
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | . payload execution = 98414 s
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | . stage-out = 4 s
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | . log creation = 1 s
[2025-11-26 13:53:40] 2025-11-26 18:53:07,670 | INFO     | ..............................
[2025-11-26 13:53:40] 2025-11-26 18:53:07,947 | INFO     | 
[2025-11-26 13:53:40] 2025-11-26 18:53:07,947 | INFO     | job summary report
[2025-11-26 13:53:40] 2025-11-26 18:53:07,947 | INFO     | --------------------------------------------------
[2025-11-26 13:53:40] 2025-11-26 18:53:07,947 | INFO     | PanDA job id: 6895384307
[2025-11-26 13:53:40] 2025-11-26 18:53:07,947 | INFO     | task id: 47556149
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | errors: (none)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | pilot state: finished 
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | transexitcode: 0
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | exeerrorcode: 0
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | exeerrordiag: 
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | exitcode: 0
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | exitmsg: OK
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | cpuconsumptiontime: 263358 s
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | nevents: 1000
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | neventsw: 0
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | pid: 531294
[2025-11-26 13:53:40] 2025-11-26 18:53:07,948 | INFO     | pgrp: 531294
[2025-11-26 13:53:40] 2025-11-26 18:53:07,949 | INFO     | corecount: 8
[2025-11-26 13:53:40] 2025-11-26 18:53:07,949 | INFO     | event service: False
[2025-11-26 13:53:40] 2025-11-26 18:53:07,949 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284172, 4: 2284399, 5: 2284399, 16: 2284455, 27: 2284611, 38: 2284639, 40: 2284929, 49: 2284957, 98461: 2355132, 98466: 2364126
[2025-11-26 13:53:40] 2025-11-26 18:53:07,949 | INFO     | --------------------------------------------------
[2025-11-26 13:53:40] 2025-11-26 18:53:07,949 | INFO     | 
[2025-11-26 13:53:40] 2025-11-26 18:53:07,949 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 13:53:40] 2025-11-26 18:53:07,970 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,971 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,971 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,971 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,971 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,971 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,971 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,972 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,973 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:53:40] 2025-11-26 18:53:07,973 | INFO     | job 6895384307 has completed (purged errors)
[2025-11-26 13:53:40] 2025-11-26 18:53:07,973 | INFO     | overall cleanup function is called
[2025-11-26 13:53:40] 2025-11-26 18:53:08,992 | INFO     | --- collectZombieJob: --- 10, [531294]
[2025-11-26 13:53:40] 2025-11-26 18:53:08,992 | INFO     | zombie collector waiting for pid 531294
[2025-11-26 13:53:40] 2025-11-26 18:53:08,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:53:40] 2025-11-26 18:53:08,993 | INFO     | collected zombie processes
[2025-11-26 13:53:40] 2025-11-26 18:53:08,993 | INFO     | will attempt to kill all subprocesses of pid=531294
[2025-11-26 13:53:40] 2025-11-26 18:53:09,385 | INFO     | process IDs to be killed: [531294] (in reverse order)
[2025-11-26 13:53:40] 2025-11-26 18:53:09,497 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:53:40] 2025-11-26 18:53:09,498 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:53:40] 2025-11-26 18:53:09,512 | INFO     | did not find any defunct processes belonging to 531294
[2025-11-26 13:53:40] 2025-11-26 18:53:09,526 | INFO     | did not find any defunct processes belonging to 531294
[2025-11-26 13:53:40] 2025-11-26 18:53:09,528 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:53:40] 2025-11-26 18:53:09,528 | INFO     | ready for new job
[2025-11-26 13:53:40] 2025-11-26 18:53:09,528 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:53:40] 2025-11-26 18:53:09,535 | INFO     | ***************************************
[2025-11-26 13:53:40] 2025-11-26 18:53:09,535 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:53:40] 2025-11-26 18:53:09,535 | INFO     | ***************************************
[2025-11-26 13:53:40] 2025-11-26 18:53:09,536 | INFO     | 
[2025-11-26 13:53:40] 2025-11-26 18:53:09,541 | INFO     | architecture information:
[2025-11-26 13:53:40] 2025-11-26 18:53:09,542 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:53:40] 2025-11-26 18:53:09,559 | INFO     | cat /etc/os-release:
[2025-11-26 13:53:40] NAME="CentOS Linux"
[2025-11-26 13:53:40] VERSION="7 (Core)"
[2025-11-26 13:53:40] ID="centos"
[2025-11-26 13:53:40] ID_LIKE="rhel fedora"
[2025-11-26 13:53:40] VERSION_ID="7"
[2025-11-26 13:53:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:53:40] ANSI_COLOR="0;31"
[2025-11-26 13:53:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:53:40] HOME_URL="https://www.centos.org/"
[2025-11-26 13:53:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:53:40] 
[2025-11-26 13:53:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:53:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:53:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:53:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:53:40] 
[2025-11-26 13:53:40] 2025-11-26 18:53:09,559 | INFO     | ***************************************
[2025-11-26 13:53:40] 2025-11-26 18:53:10,061 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 13:53:40] 2025-11-26 18:53:10,088 | INFO     | sufficient remaining disk space (118459727872 B)
[2025-11-26 13:53:40] 2025-11-26 18:53:10,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:53:40] 2025-11-26 18:53:10,089 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:53:40] 2025-11-26 18:53:10,089 | INFO     | update_server=False
[2025-11-26 13:53:40] 2025-11-26 18:53:10,089 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:53:40] 2025-11-26 18:53:10,090 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:53:40] 2025-11-26 18:53:10,090 | INFO     | aborting loop
[2025-11-26 13:53:40] 2025-11-26 18:53:10,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:53:40] 2025-11-26 18:53:10,466 | INFO     | all data control threads have been joined
[2025-11-26 13:53:40] 2025-11-26 18:53:10,679 | INFO     | all payload control threads have been joined
[2025-11-26 13:53:40] 2025-11-26 18:53:11,095 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:11,096 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:11,153 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:11,298 | INFO     | all job control threads have been joined
[2025-11-26 13:53:40] 2025-11-26 18:53:11,452 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:11,472 | INFO     | [data] control thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:11,685 | INFO     | [payload] control thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:11,767 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:11,970 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:12,046 | INFO     | [job] validate thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:12,097 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:12,279 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:12,304 | INFO     | [job] control thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:12,482 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:12,650 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:12,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:53:40] 2025-11-26 18:53:13,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:53:40] 2025-11-26 18:53:13,798 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:17,461 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:53:40] 2025-11-26 18:53:22,727 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:53:40] 2025-11-26 18:53:23,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898271557440)>', '<ExcThread(monitor, started 139897553811200)>']
[2025-11-26 13:53:40] 2025-11-26 18:53:28,187 | INFO     | all workflow threads have been joined
[2025-11-26 13:53:40] 2025-11-26 18:53:28,187 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:53:40] 2025-11-26 18:53:28,188 | INFO     | traces error code: 0
[2025-11-26 13:53:40] 2025-11-26 18:53:28,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:53:40] 2025-11-26 18:53:40,218 | INFO     | PID=522134 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 13:53:40] 2025-11-26 18:53:40,218 | INFO     | .. there are 20 such processes running
[2025-11-26 13:53:40] 2025-11-26 18:53:40,219 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:53:40] 2025-11-26 18:53:40,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:53:40] 2025-11-26 18:53:40,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:53:40] 2025-11-26 18:53:40,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:53:40] 2025-11-26 18:53:40,220 | INFO     | [monitor] control thread has ended
[2025-11-26 13:53:40] 2025-11-26 18:53:40,449 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:53:40] 2025-11-26 18:53:40,463 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:53:40] 2025-11-26 18:53:40,489 [wrapper] pilotpid: 522134
[2025-11-26 13:53:40] 2025-11-26 18:53:40,511 [wrapper] Pilot exit status: 0
[2025-11-26 13:53:40] 2025-11-26 18:53:40,580 [wrapper] pandaids: 6895384307
[2025-11-26 13:53:40] 2025-11-26 18:53:40,663 [wrapper] cleanup supervisor_pilot 3818899 522135
[2025-11-26 13:53:40] 2025-11-26 18:53:40,678 [wrapper] Test setup, not cleaning
[2025-11-26 13:53:40] 2025-11-26 18:53:40,681 [wrapper] apfmon messages muted
[2025-11-26 13:53:40] 2025-11-26 18:53:40,683 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:53:40] 2025-11-26 18:53:40,685 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:53:40]  *** Error codes and diagnostics ***
[2025-11-26 13:53:40]     "exeErrorCode": 0,
[2025-11-26 13:53:40]     "exeErrorDiag": "",
[2025-11-26 13:53:40]     "pilotErrorCode": 0,
[2025-11-26 13:53:40]     "pilotErrorDiag": "",
[2025-11-26 13:53:40]  *** Listing of results directory ***
[2025-11-26 13:53:40] total 1332108
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-26 13:53:40] -rwx------. 1 boincer umatlas     36292 Nov 23 23:46 runpilot2-wrapper.sh
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 23:46 queuedata.json
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas       100 Nov 25 10:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:53:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 10:28 run_atlas
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas       105 Nov 25 10:28 job.xml
[2025-11-26 13:53:40] -rw-r--r--. 2 boincer umatlas 410167647 Nov 25 10:28 EVNT.47483658._001221.pool.root.1
[2025-11-26 13:53:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 10:28 shared
[2025-11-26 13:53:40] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 10:28 input.tar.gz
[2025-11-26 13:53:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:28 start_atlas.sh
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas         0 Nov 25 10:28 boinc_lockfile
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 10:29 pandaJob.out
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas        57 Nov 25 10:29 setup.sh.local
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas    991909 Nov 25 10:30 agis_schedconf.cvmfs.json
[2025-11-26 13:53:40] drwx------. 5 boincer umatlas      4096 Nov 25 10:30 pilot3
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas       533 Nov 26 12:42 boinc_task_state.xml
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 13:47 init_data.xml
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas 920128955 Nov 26 13:51 HITS.47556149._002077.pool.root.1
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas      1061 Nov 26 13:52 memory_monitor_summary.json
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas   1516240 Nov 26 13:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas   2592532 Nov 26 13:52 log.47556149._002077.job.log.tgz.1
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas      8619 Nov 26 13:53 heartbeat.json
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas        29 Nov 26 13:53 wrapper_checkpoint.txt
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas       822 Nov 26 13:53 pilotlog.txt
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas        95 Nov 26 13:53 pilot_heartbeat.json
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas  12341604 Nov 26 13:53 log.47556149._002077.job.log.1
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas       353 Nov 26 13:53 output.list
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas       620 Nov 26 13:53 runtime_log
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas  14950400 Nov 26 13:53 result.tar.gz
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 13:53 runtime_log.err
[2025-11-26 13:53:40] -rw-------. 1 boincer umatlas       662 Nov 26 13:53 GfDODmCedh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmuIKDmMnKTLo.diag
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 13:53 boinc_mmap_file
[2025-11-26 13:53:40] -rw-r--r--. 1 boincer umatlas     21974 Nov 26 13:53 stderr.txt
[2025-11-26 13:53:41] HITS file was successfully produced:
[2025-11-26 13:53:41] -rw-------. 1 boincer umatlas 920128955 Nov 26 13:51 shared/HITS.pool.root.1
[2025-11-26 13:53:41]  *** Contents of shared directory: ***
[2025-11-26 13:53:41] total 1314324
[2025-11-26 13:53:41] -rw-r--r--. 2 boincer umatlas 410167647 Nov 25 10:28 ATLAS.root_0
[2025-11-26 13:53:41] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 10:28 input.tar.gz
[2025-11-26 13:53:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 10:28 start_atlas.sh
[2025-11-26 13:53:41] -rw-------. 1 boincer umatlas 920128955 Nov 26 13:51 HITS.pool.root.1
[2025-11-26 13:53:41] -rw-------. 1 boincer umatlas  14950400 Nov 26 13:53 result.tar.gz
13:53:42 (516910): run_atlas exited; CPU time 265986.114052
13:53:42 (516910): called boinc_finish(0)

</stderr_txt>
]]>

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