Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 16:01:45 (580): vboxwrapper version 26210
2025-11-25 16:01:45 (580): BOINC client version: 8.0.2
2025-11-25 16:01:46 (580): Detected: VirtualBox VboxManage Interface (Version: 7.0.10)
2025-11-25 16:01:46 (580): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 16:01:47 (580): Create VM. (boinc_7d1bbfb2c7cfe475, slot#0)
2025-11-25 16:01:47 (580): Setting Memory Size for VM. (4300MB)
2025-11-25 16:01:47 (580): Setting CPU Count for VM. (3)
2025-11-25 16:01:48 (580): Setting Chipset Options for VM.
2025-11-25 16:01:48 (580): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 16:01:48 (580): Setting Boot Options for VM.
2025-11-25 16:01:49 (580): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 16:01:49 (580): Enabling VM Network Access.
2025-11-25 16:01:49 (580): Disabling USB Support for VM.
2025-11-25 16:01:50 (580): Disabling COM Port Support for VM.
2025-11-25 16:01:50 (580): Disabling LPT Port Support for VM.
2025-11-25 16:01:50 (580): Disabling Audio Support for VM.
2025-11-25 16:01:50 (580): Disabling Clipboard Support for VM.
2025-11-25 16:01:51 (580): Disabling Drag and Drop Support for VM.
2025-11-25 16:01:51 (580): Adding storage controller(s) to VM.
2025-11-25 16:01:51 (580): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 16:01:53 (580): Adding VirtualBox Guest Additions to VM.
2025-11-25 16:01:53 (580): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 16:01:54 (580): forwarding host port 64064 to guest port 80
2025-11-25 16:01:54 (580): Enabling remote desktop for VM.
2025-11-25 16:01:54 (580): Required extension pack not installed, remote desktop not enabled.
2025-11-25 16:01:54 (580): Enabling shared directory for VM.
2025-11-25 16:01:55 (580): Starting VM using VBoxManage interface. (boinc_7d1bbfb2c7cfe475, slot#0)
2025-11-25 16:02:00 (580): Successfully started VM. (PID = '2996')
2025-11-25 16:02:00 (580): Reporting VM Process ID to BOINC.
2025-11-25 16:02:00 (580): Guest Log: BIOS: VirtualBox 7.0.10
2025-11-25 16:02:00 (580): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 16:02:00 (580): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 16:02:00 (580): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 16:02:00 (580): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 16:02:00 (580): Detected: Web Application Enabled (http://localhost:64064)
2025-11-25 16:02:00 (580): Preference change detected
2025-11-25 16:02:00 (580): Setting CPU throttle for VM. (100%)
2025-11-25 16:02:00 (580): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 16:02:02 (580): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 16:02:02 (580): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 16:02:05 (580): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 16:02:05 (580): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 16:02:05 (580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 16:02:10 (580): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 16:02:10 (580): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 16:02:14 (580): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 16:02:14 (580): Guest Log: 00:00:00.000074 main     Log opened 2025-11-25T16:02:12.748431000Z
2025-11-25 16:02:14 (580): Guest Log: 00:00:00.000135 main     OS Product: Linux
2025-11-25 16:02:14 (580): Guest Log: 00:00:00.000149 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 16:02:14 (580): Guest Log: 00:00:00.000164 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 16:02:14 (580): Guest Log: 00:00:00.000179 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 16:02:14 (580): Guest Log: 00:00:00.000179 main     Process ID: 1287
2025-11-25 16:02:14 (580): Guest Log: 00:00:00.000179 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 16:02:14 (580): Guest Log: 00:00:00.001959 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 16:02:14 (580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 16:02:14 (580): Guest Log: [INFO] Mounting shared directory
2025-11-25 16:02:14 (580): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 16:02:20 (580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 16:02:20 (580): Guest Log: [INFO] Detected branch: prod
2025-11-25 16:02:20 (580): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 16:02:20 (580): Guest Log: Copying input files
2025-11-25 16:02:21 (580): Guest Log: Copied input files into RunAtlas.
2025-11-25 16:02:21 (580): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 16:02:21 (580): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 16:02:21 (580): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 16:02:21 (580): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 16:02:24 (580): Guest Log: 00:00:10.003388 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 864 341 000ns (GuestNow=1 764 082 943 887 163 000 ns GuestLast=1 764 086 532 751 504 000 ns fSetTimeLastLoop=true )
2025-11-25 16:02:29 (580): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 16:02:29 (580): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 16:02:29 (580): Guest Log: 2.6.3.0 1562 0 32012 153285 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 16:02:30 (580): Guest Log: copied the webapp to /var/www
2025-11-25 16:02:30 (580): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-25 16:02:30 (580): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-25 16:02:30 (580): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 16:02:30 (580): Guest Log:  *** Starting ATLAS job. (PandaID=6895384477 taskID=47556161) ***
2025-11-25 17:42:03 (580): Status Report: Elapsed Time: '6000.000000'
2025-11-25 17:42:03 (580): Status Report: CPU Time: '15698.375000'
2025-11-25 19:22:07 (580): Status Report: Elapsed Time: '12000.000000'
2025-11-25 19:22:07 (580): Status Report: CPU Time: '33680.515625'
2025-11-25 21:02:11 (580): Status Report: Elapsed Time: '18000.000000'
2025-11-25 21:02:11 (580): Status Report: CPU Time: '51674.828125'
2025-11-25 22:42:15 (580): Status Report: Elapsed Time: '24000.000000'
2025-11-25 22:42:15 (580): Status Report: CPU Time: '69671.375000'
2025-11-26 00:22:19 (580): Status Report: Elapsed Time: '30000.000000'
2025-11-26 00:22:19 (580): Status Report: CPU Time: '87668.375000'
2025-11-26 01:36:55 (580): Guest Log:  *** Job finished ***
2025-11-26 01:36:55 (580): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:39,022 | INFO     | all workflow threads have been joined
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:39,022 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:39,022 | INFO     | traces error code: 0
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:39,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,473 | INFO     | PID=5966 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,473 | INFO     | found 0 job(s) in 20 queues
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,473 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,473 | INFO     | [monitor] control thread has ended
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,561 [wrapper] ==== pilot stdout END ====
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,563 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,565 [wrapper] pilotpid: 5966
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,568 [wrapper] Pilot exit status: 0
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,577 [wrapper] pandaids: 6895384477
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,592 [wrapper] cleanup supervisor_pilot 16467 5967
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,594 [wrapper] Test setup, not cleaning
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,596 [wrapper] apfmon messages muted
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,599 [wrapper] ==== wrapper stdout END ====
2025-11-26 01:36:55 (580): Guest Log: 2025-11-26 00:36:51,601 [wrapper] ==== wrapper stderr END ====
2025-11-26 01:36:55 (580): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 01:36:55 (580): Guest Log:     "exeErrorCode": 0,
2025-11-26 01:36:55 (580): Guest Log:     "exeErrorDiag": "",
2025-11-26 01:36:55 (580): Guest Log:     "pilotErrorCode": 0,
2025-11-26 01:36:55 (580): Guest Log:     "pilotErrorDiag": "",
2025-11-26 01:36:55 (580): Guest Log:  *** Listing of results directory ***
2025-11-26 01:36:55 (580): Guest Log: total 911628
2025-11-26 01:36:55 (580): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 24 04:40 pilot3.tar.gz
2025-11-26 01:36:55 (580): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 24 05:03 queuedata.json
2025-11-26 01:36:55 (580): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 24 05:04 runpilot2-wrapper.sh
2025-11-26 01:36:55 (580): Guest Log: -rwxr-xr-x. 1 atlas atlas     12431 Nov 25 15:02 init_data.xml
2025-11-26 01:36:55 (580): Guest Log: -rwxr-xr-x. 1 atlas atlas    590099 Nov 25 15:02 input.tar.gz
2025-11-26 01:36:55 (580): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 25 15:02 start_atlas.sh
2025-11-26 01:36:55 (580): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 15:02 EVNT.47483658._002017.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 01:36:55 (580): Guest Log: -rw-r--r--. 1 atlas atlas      2783 Nov 25 15:02 pandaJob.out
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas    991909 Nov 25 15:04 agis_schedconf.cvmfs.json
2025-11-26 01:36:55 (580): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 15:04 pilot3
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas 917852337 Nov 26 00:35 HITS.47556161._000010.pool.root.1
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas      1042 Nov 26 00:36 memory_monitor_summary.json
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 00:36 agis_ddmendpoints.agis.ALL.json
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas   1241229 Nov 26 00:36 log.47556161._000010.job.log.tgz.1
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 00:36 pilot_heartbeat.json
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas      8662 Nov 26 00:36 heartbeat.json
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas       744 Nov 26 00:36 pilotlog.txt
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas   4662288 Nov 26 00:36 log.47556161._000010.job.log.1
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 00:36 output.list
2025-11-26 01:36:55 (580): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 00:36 runtime_log
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas   5918720 Nov 26 00:36 result.tar.gz
2025-11-26 01:36:55 (580): Guest Log: -rw-r--r--. 1 atlas atlas      8759 Nov 26 00:36 runtime_log.err
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas       664 Nov 26 00:36 ksJKDm6vdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSRLKDmXbuOWm.diag
2025-11-26 01:36:55 (580): Guest Log: Looking for outputfile HITS.47556161._000010.pool.root.1
2025-11-26 01:36:55 (580): Guest Log: HITS file was successfully produced
2025-11-26 01:36:55 (580): Guest Log: -rw-------. 1 atlas atlas 917852337 Nov 26 00:35 /home/atlas/RunAtlas/HITS.47556161._000010.pool.root.1
2025-11-26 01:36:57 (580): Guest Log: Successfully finished the ATLAS job!
2025-11-26 01:36:57 (580): Guest Log: Copying the results back to the shared directory!
2025-11-26 01:36:57 (580): Guest Log:  *** Contents of shared directory: ***
2025-11-26 01:36:57 (580): Guest Log: total 1300060
2025-11-26 01:36:57 (580): Guest Log: -rwxrwxrwx. 1 root root 406857083 Nov 25 15:01 ATLAS.root_0
2025-11-26 01:36:57 (580): Guest Log: -rwxrwxrwx. 1 root root 917852337 Nov 26 00:36 HITS.pool.root.1
2025-11-26 01:36:57 (580): Guest Log: -rwxrwxrwx. 1 root root     12431 Nov 25 15:01 init_data.xml
2025-11-26 01:36:57 (580): Guest Log: -rwxrwxrwx. 1 root root    590099 Nov 25 14:56 input.tar.gz
2025-11-26 01:36:57 (580): Guest Log: -rwxrwxrwx. 1 root root   5918720 Nov 26 00:36 result.tar.gz
2025-11-26 01:36:57 (580): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 25 14:56 start_atlas.sh
2025-11-26 01:36:57 (580): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 01:36:57 (580): VM Completion File Detected.
2025-11-26 01:36:57 (580): Powering off VM.
2025-11-26 01:36:58 (580): Successfully stopped VM.
2025-11-26 01:36:58 (580): Deregistering VM. (boinc_7d1bbfb2c7cfe475, slot#0)
2025-11-26 01:36:58 (580): Removing network bandwidth throttle group from VM.
2025-11-26 01:36:58 (580): Removing VM from VirtualBox.
2025-11-26 01:37:03 (580): called boinc_finish(0)

</stderr_txt>
]]>

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