Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:56:56 (1403195): wrapper (7.7.26015): starting
13:56:56 (1403195): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:56:56] Arguments: --nthreads 8
[2025-11-25 13:56:56] Threads: 8
[2025-11-25 13:56:56] Checking for CVMFS
[2025-11-25 13:56:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:56:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:56:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:56:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:56:58] 2.13.3.0 7558 28999 339784 153293 1 365 27535232 32935937 26268 16776704 0 119330072 99.519 149828269 38483 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 13:56:58] CVMFS is ok
[2025-11-25 13:56:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:56:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:56:58] Further information can be found at the LHC@home message board.
[2025-11-25 13:56:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:56:58] Checking for apptainer binary...
[2025-11-25 13:56:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:56:58] Running /usr/bin/apptainer --version
[2025-11-25 13:56:59] apptainer version 1.4.4-1.el9
[2025-11-25 13:56:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:56:59] c6-6-39-2.aglt2.org
[2025-11-25 13:56:59] apptainer works
[2025-11-25 13:56:59] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:56:59] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:56:59] Starting ATLAS job with PandaID=6895883551
[2025-11-25 13:56:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:51:39]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:51:39] 2025-11-26 14:50:24,616 | INFO     | time since job start (71540s) is within the limit (172800.0s)
[2025-11-26 09:51:39] 2025-11-26 14:50:24,655 | INFO     | monitor loop #4809: job 0:6895883551 is in state 'finished'
[2025-11-26 09:51:39] 2025-11-26 14:50:24,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:51:39] 2025-11-26 14:50:25,885 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 09:51:39] 2025-11-26 14:50:25,888 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3011.448017857143
[2025-11-26 09:51:39] 2025-11-26 14:50:25,898 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895883551/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:51:39] 2025-11-26 14:50:25,899 | INFO     | extracted standard info from prmon json
[2025-11-26 09:51:39] 2025-11-26 14:50:25,899 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:51:39] 2025-11-26 14:50:25,899 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:51:39] 2025-11-26 14:50:25,915 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:51:39] 2025-11-26 14:50:25,917 | INFO     | sum of square deviations: 497897597734.1149
[2025-11-26 09:51:39] 2025-11-26 14:50:25,940 | INFO     | sum of deviations: 3557432682599.0527
[2025-11-26 09:51:39] 2025-11-26 14:50:25,940 | INFO     | mean x: 1764132902.7421007
[2025-11-26 09:51:39] 2025-11-26 14:50:25,940 | INFO     | mean y: 2926137.357813834
[2025-11-26 09:51:39] 2025-11-26 14:50:25,940 | INFO     | intersect: -12601641695.914705
[2025-11-26 09:51:39] 2025-11-26 14:50:25,942 | INFO     | chi2: 13.472634047305005
[2025-11-26 09:51:39] 2025-11-26 14:50:25,943 | INFO     | sum of square deviations: 491547073933.8491
[2025-11-26 09:51:39] 2025-11-26 14:50:25,967 | INFO     | sum of deviations: 3962287847871.267
[2025-11-26 09:51:39] 2025-11-26 14:50:25,967 | INFO     | mean x: 1764132750.2452831
[2025-11-26 09:51:39] 2025-11-26 14:50:25,967 | INFO     | mean y: 2935858.820754717
[2025-11-26 09:51:39] 2025-11-26 14:50:25,968 | INFO     | intersect: -14217475835.195951
[2025-11-26 09:51:39] 2025-11-26 14:50:25,969 | INFO     | chi2: 10.229267280395272
[2025-11-26 09:51:39] 2025-11-26 14:50:25,969 | INFO     | current chi2=10.229267280395272 (change=24.073739073752396 %)
[2025-11-26 09:51:39] 2025-11-26 14:50:25,969 | INFO     | right removable region: 1165
[2025-11-26 09:51:39] 2025-11-26 14:50:25,970 | INFO     | sum of square deviations: 491546543843.8486
[2025-11-26 09:51:39] 2025-11-26 14:50:26,003 | INFO     | sum of deviations: 3087613312736.9043
[2025-11-26 09:51:39] 2025-11-26 14:50:26,007 | INFO     | mean x: 1764133055.2452831
[2025-11-26 09:51:39] 2025-11-26 14:50:26,007 | INFO     | mean y: 2937416.846483705
[2025-11-26 09:51:39] 2025-11-26 14:50:26,007 | INFO     | intersect: -11078334082.32801
[2025-11-26 09:51:39] 2025-11-26 14:50:26,009 | INFO     | chi2: 9.43623522169053
[2025-11-26 09:51:39] 2025-11-26 14:50:26,009 | INFO     | current chi2=9.43623522169053 (change=29.959982668881995 %)
[2025-11-26 09:51:39] 2025-11-26 14:50:26,010 | INFO     | sum of square deviations: 485249723528.5603
[2025-11-26 09:51:39] 2025-11-26 14:50:26,053 | INFO     | sum of deviations: 2680176127197.7305
[2025-11-26 09:51:39] 2025-11-26 14:50:26,054 | INFO     | mean x: 1764133207.7484927
[2025-11-26 09:51:39] 2025-11-26 14:50:26,054 | INFO     | mean y: 2947283.1291989665
[2025-11-26 09:51:39] 2025-11-26 14:50:26,054 | INFO     | intersect: -9740876318.093271
[2025-11-26 09:51:39] 2025-11-26 14:50:26,055 | INFO     | chi2: 6.496100730848464
[2025-11-26 09:51:39] 2025-11-26 14:50:26,055 | INFO     | current chi2=6.496100730848464 (change=31.15791861656595 %)
[2025-11-26 09:51:39] 2025-11-26 14:50:26,057 | INFO     | sum of square deviations: 479007187143.74677
[2025-11-26 09:51:39] 2025-11-26 14:50:26,083 | INFO     | sum of deviations: 2512081317602.5283
[2025-11-26 09:51:39] 2025-11-26 14:50:26,083 | INFO     | mean x: 1764133360.2482698
[2025-11-26 09:51:39] 2025-11-26 14:50:26,083 | INFO     | mean y: 2951385.2664359864
[2025-11-26 09:51:39] 2025-11-26 14:50:26,083 | INFO     | intersect: -9248781313.076445
[2025-11-26 09:51:39] 2025-11-26 14:50:26,085 | INFO     | chi2: 5.996566871449974
[2025-11-26 09:51:39] 2025-11-26 14:50:26,085 | INFO     | current chi2=5.996566871449974 (change=7.689749283386574 %)
[2025-11-26 09:51:39] 2025-11-26 14:50:26,085 | INFO     | left removable region: 30
[2025-11-26 09:51:39] 2025-11-26 14:50:26,086 | INFO     | sum of square deviations: 453373196413.4304
[2025-11-26 09:51:39] 2025-11-26 14:50:26,124 | INFO     | sum of deviations: 2758586228007.648
[2025-11-26 09:51:39] 2025-11-26 14:50:26,124 | INFO     | mean x: 1764133634.7524228
[2025-11-26 09:51:39] 2025-11-26 14:50:26,124 | INFO     | mean y: 2969480.763876652
[2025-11-26 09:51:39] 2025-11-26 14:50:26,124 | INFO     | intersect: -10731045647.813198
[2025-11-26 09:51:39] 2025-11-26 14:50:26,125 | INFO     | chi2: 1.8886139205031882
[2025-11-26 09:51:39] 2025-11-26 14:50:26,126 | INFO     | current memory leak: 6.08 B/s (using 1135 data points, chi2=1.89)
[2025-11-26 09:51:39] 2025-11-26 14:50:26,131 | INFO     | could have reported an average CPU frequency of 2938 MHz (43 samples)
[2025-11-26 09:51:39] 2025-11-26 14:50:26,131 | INFO     | ..............................
[2025-11-26 09:51:39] 2025-11-26 14:50:26,131 | INFO     | . Timing measurements:
[2025-11-26 09:51:39] 2025-11-26 14:50:26,131 | INFO     | . get job = 0 s
[2025-11-26 09:51:39] 2025-11-26 14:50:26,131 | INFO     | . initial setup = 6 s
[2025-11-26 09:51:39] 2025-11-26 14:50:26,131 | INFO     | . payload setup = 42 s
[2025-11-26 09:51:39] 2025-11-26 14:50:26,132 | INFO     | . stage-in = 0 s
[2025-11-26 09:51:39] 2025-11-26 14:50:26,132 | INFO     | . payload execution = 71409 s
[2025-11-26 09:51:39] 2025-11-26 14:50:26,132 | INFO     | . stage-out = 6 s
[2025-11-26 09:51:39] 2025-11-26 14:50:26,132 | INFO     | . log creation = 1 s
[2025-11-26 09:51:39] 2025-11-26 14:50:26,132 | INFO     | ..............................
[2025-11-26 09:51:39] 2025-11-26 14:50:26,309 | INFO     | 
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | job summary report
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | --------------------------------------------------
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | PanDA job id: 6895883551
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | task id: 47556149
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | errors: (none)
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | pilot state: finished 
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | transexitcode: 0
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | exeerrorcode: 0
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | exeerrordiag: 
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | exitcode: 0
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | exitmsg: OK
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | cpuconsumptiontime: 245221 s
[2025-11-26 09:51:39] 2025-11-26 14:50:26,310 | INFO     | nevents: 1000
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | neventsw: 0
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | pid: 1418785
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | pgrp: 1418785
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | corecount: 8
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | event service: False
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 31: 2284661, 34: 2284689, 71455: 2342696, 71456: 2342695, 71465: 2351801, 71481: 2351991}
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | --------------------------------------------------
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | 
[2025-11-26 09:51:39] 2025-11-26 14:50:26,311 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 09:51:39] 2025-11-26 14:50:26,371 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | job 6895883551 has completed (purged errors)
[2025-11-26 09:51:39] 2025-11-26 14:50:26,373 | INFO     | overall cleanup function is called
[2025-11-26 09:51:39] 2025-11-26 14:50:27,392 | INFO     | --- collectZombieJob: --- 10, [1418785]
[2025-11-26 09:51:39] 2025-11-26 14:50:27,392 | INFO     | zombie collector waiting for pid 1418785
[2025-11-26 09:51:39] 2025-11-26 14:50:27,392 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:51:39] 2025-11-26 14:50:27,392 | INFO     | collected zombie processes
[2025-11-26 09:51:39] 2025-11-26 14:50:27,392 | INFO     | will attempt to kill all subprocesses of pid=1418785
[2025-11-26 09:51:39] 2025-11-26 14:50:27,975 | INFO     | process IDs to be killed: [1418785] (in reverse order)
[2025-11-26 09:51:39] 2025-11-26 14:50:28,131 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:51:39] 2025-11-26 14:50:28,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:51:39] 2025-11-26 14:50:28,166 | INFO     | did not find any defunct processes belonging to 1418785
[2025-11-26 09:51:39] 2025-11-26 14:50:28,218 | INFO     | did not find any defunct processes belonging to 1418785
[2025-11-26 09:51:39] 2025-11-26 14:50:28,219 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:51:39] 2025-11-26 14:50:28,219 | INFO     | ready for new job
[2025-11-26 09:51:39] 2025-11-26 14:50:28,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:51:39] 2025-11-26 14:50:28,225 | INFO     | ***************************************
[2025-11-26 09:51:39] 2025-11-26 14:50:28,225 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:51:39] 2025-11-26 14:50:28,225 | INFO     | ***************************************
[2025-11-26 09:51:39] 2025-11-26 14:50:28,225 | INFO     | 
[2025-11-26 09:51:39] 2025-11-26 14:50:28,228 | INFO     | architecture information:
[2025-11-26 09:51:39] 2025-11-26 14:50:28,229 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:51:39] 2025-11-26 14:50:28,265 | INFO     | cat /etc/os-release:
[2025-11-26 09:51:39] NAME="CentOS Linux"
[2025-11-26 09:51:39] VERSION="7 (Core)"
[2025-11-26 09:51:39] ID="centos"
[2025-11-26 09:51:39] ID_LIKE="rhel fedora"
[2025-11-26 09:51:39] VERSION_ID="7"
[2025-11-26 09:51:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:51:39] ANSI_COLOR="0;31"
[2025-11-26 09:51:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:51:39] HOME_URL="https://www.centos.org/"
[2025-11-26 09:51:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:51:39] 
[2025-11-26 09:51:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:51:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:51:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:51:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:51:39] 
[2025-11-26 09:51:39] 2025-11-26 14:50:28,265 | INFO     | ***************************************
[2025-11-26 09:51:39] 2025-11-26 14:50:28,774 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 09:51:39] 2025-11-26 14:50:28,923 | INFO     | sufficient remaining disk space (67688726528 B)
[2025-11-26 09:51:39] 2025-11-26 14:50:28,924 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:51:39] 2025-11-26 14:50:28,924 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:51:39] 2025-11-26 14:50:28,924 | INFO     | update_server=False
[2025-11-26 09:51:39] 2025-11-26 14:50:28,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:51:39] 2025-11-26 14:50:28,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:51:39] 2025-11-26 14:50:28,924 | INFO     | aborting loop
[2025-11-26 09:51:39] 2025-11-26 14:50:29,547 | INFO     | all data control threads have been joined
[2025-11-26 09:51:39] 2025-11-26 14:50:29,930 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:29,931 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:29,959 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:30,064 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:30,089 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:51:39] 2025-11-26 14:50:30,091 | INFO     | all payload control threads have been joined
[2025-11-26 09:51:39] 2025-11-26 14:50:30,119 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:30,214 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:51:39] 2025-11-26 14:50:30,296 | INFO     | all job control threads have been joined
[2025-11-26 09:51:39] 2025-11-26 14:50:30,547 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:30,553 | INFO     | [data] control thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:30,761 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:31,096 | INFO     | [payload] control thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:31,153 | INFO     | [job] validate thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:31,226 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:31,253 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:31,301 | INFO     | [job] control thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:31,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:51:39] 2025-11-26 14:50:32,221 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:32,334 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:34,108 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:51:39] 2025-11-26 14:50:58,439 | INFO     | PID=1409787 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:51:39] 2025-11-26 14:50:58,439 | INFO     | .. there are 39 such processes running
[2025-11-26 09:51:39] 2025-11-26 14:50:58,440 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:51:39] 2025-11-26 14:50:58,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:51:39] 2025-11-26 14:50:58,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:51:39] 2025-11-26 14:51:07,562 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:51:39] 2025-11-26 14:51:07,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139734843594560)>', '<ExcThread(monitor, started 139734202443520)>']
[2025-11-26 09:51:39] 2025-11-26 14:51:08,513 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:51:39] 2025-11-26 14:51:08,513 | INFO     | [monitor] control thread has ended
[2025-11-26 09:51:39] 2025-11-26 14:51:12,882 | INFO     | all workflow threads have been joined
[2025-11-26 09:51:39] 2025-11-26 14:51:12,882 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:51:39] 2025-11-26 14:51:12,882 | INFO     | traces error code: 0
[2025-11-26 09:51:39] 2025-11-26 14:51:12,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:51:39] 2025-11-26 14:51:13,288 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:51:39] 2025-11-26 14:51:13,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:51:39] 2025-11-26 14:51:13,332 [wrapper] pilotpid: 1409787
[2025-11-26 09:51:39] 2025-11-26 14:51:13,350 [wrapper] Pilot exit status: 0
[2025-11-26 09:51:39] 2025-11-26 14:51:13,440 [wrapper] pandaids: 6895883551
[2025-11-26 09:51:39] 2025-11-26 14:51:13,577 [wrapper] cleanup supervisor_pilot 1817449 1409788
[2025-11-26 09:51:39] 2025-11-26 14:51:13,583 [wrapper] Test setup, not cleaning
[2025-11-26 09:51:39] 2025-11-26 14:51:13,585 [wrapper] apfmon messages muted
[2025-11-26 09:51:39] 2025-11-26 14:51:13,589 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:51:39] 2025-11-26 14:51:13,593 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:51:39]  *** Error codes and diagnostics ***
[2025-11-26 09:51:39]     "exeErrorCode": 0,
[2025-11-26 09:51:39]     "exeErrorDiag": "",
[2025-11-26 09:51:39]     "pilotErrorCode": 0,
[2025-11-26 09:51:39]     "pilotErrorDiag": "",
[2025-11-26 09:51:39]  *** Listing of results directory ***
[2025-11-26 09:51:39] total 1306688
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:46 queuedata.json
[2025-11-26 09:51:39] -rwx------. 1 boincer umatlas     36292 Nov 24 11:50 runpilot2-wrapper.sh
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas       100 Nov 25 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:51:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 13:56 run_atlas
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas       105 Nov 25 13:56 job.xml
[2025-11-26 09:51:39] -rw-r--r--. 2 boincer umatlas 408834001 Nov 25 13:56 EVNT.47483658._001391.pool.root.1
[2025-11-26 09:51:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:56 start_atlas.sh
[2025-11-26 09:51:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 13:56 shared
[2025-11-26 09:51:39] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 13:56 input.tar.gz
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas         0 Nov 25 13:56 boinc_lockfile
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 13:56 pandaJob.out
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas        57 Nov 25 13:57 setup.sh.local
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas    991543 Nov 25 13:57 agis_schedconf.cvmfs.json
[2025-11-26 09:51:39] drwx------. 5 boincer umatlas      4096 Nov 25 13:58 pilot3
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas       533 Nov 26 09:34 boinc_task_state.xml
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 09:47 init_data.xml
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas 901281663 Nov 26 09:49 HITS.47556149._003779.pool.root.1
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas      1058 Nov 26 09:49 memory_monitor_summary.json
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas        95 Nov 26 09:50 pilot_heartbeat.json
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas   1516240 Nov 26 09:50 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas   2322272 Nov 26 09:50 log.47556149._003779.job.log.tgz.1
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas      7946 Nov 26 09:50 heartbeat.json
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas      4824 Nov 26 09:51 pilotlog.txt
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas   9691120 Nov 26 09:51 log.47556149._003779.job.log.1
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas       353 Nov 26 09:51 output.list
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas       620 Nov 26 09:51 runtime_log
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas  12032000 Nov 26 09:51 result.tar.gz
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 09:51 runtime_log.err
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas       661 Nov 26 09:51 AIyLDmtwoh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnmLKDmnMFeFo.diag
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 09:51 boinc_mmap_file
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas        29 Nov 26 09:51 wrapper_checkpoint.txt
[2025-11-26 09:51:39] -rw-r--r--. 1 boincer umatlas     19640 Nov 26 09:51 stderr.txt
[2025-11-26 09:51:39] HITS file was successfully produced:
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas 901281663 Nov 26 09:49 shared/HITS.pool.root.1
[2025-11-26 09:51:39]  *** Contents of shared directory: ***
[2025-11-26 09:51:39] total 1291764
[2025-11-26 09:51:39] -rw-r--r--. 2 boincer umatlas 408834001 Nov 25 13:56 ATLAS.root_0
[2025-11-26 09:51:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 13:56 start_atlas.sh
[2025-11-26 09:51:39] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 13:56 input.tar.gz
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas 901281663 Nov 26 09:49 HITS.pool.root.1
[2025-11-26 09:51:39] -rw-------. 1 boincer umatlas  12032000 Nov 26 09:51 result.tar.gz
09:51:41 (1403195): run_atlas exited; CPU time 246889.204393
09:51:41 (1403195): called boinc_finish(0)

</stderr_txt>
]]>

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