Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:12:27 (8947): wrapper (7.7.26015): starting
21:12:27 (8947): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 21:12:27] Arguments: --nthreads 8
[2025-11-27 21:12:27] Threads: 8
[2025-11-27 21:12:27] Checking for CVMFS
[2025-11-27 21:12:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:12:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:12:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:12:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:12:29] 2.11.2.0 22738 287127 135668 153383 1 85 21678318 25165824 1288 130560 12 141775516 99.882 77112950 2864 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 21:12:29] CVMFS is ok
[2025-11-27 21:12:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:12:29] Checking for apptainer binary...
[2025-11-27 21:12:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 21:12:29] Running /usr/bin/apptainer --version
[2025-11-27 21:12:30] apptainer version 1.3.2-1.el7
[2025-11-27 21:12:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:12:41] cg-vwn395.simple-grid.lan
[2025-11-27 21:12:41] apptainer works
[2025-11-27 21:12:41] Set ATHENA_PROC_NUMBER=8
[2025-11-27 21:12:41] Set ATHENA_CORE_NUMBER=8
[2025-11-27 21:12:41] Starting ATLAS job with PandaID=6895881942
[2025-11-27 21:12:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 20:44:11]  *** The last 200 lines of the pilot log: ***
[2025-11-28 20:44:11] 2025-11-28 19:43:23,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 20:44:11] 2025-11-28 19:43:24,098 | INFO     | time since job start (84417s) is within the limit (172800.0s)
[2025-11-28 20:44:11] 2025-11-28 19:43:25,595 | INFO     | monitor loop #5698: job 0:6895881942 is in state 'finished'
[2025-11-28 20:44:11] 2025-11-28 19:43:25,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 20:44:11] 2025-11-28 19:43:26,103 | INFO     | time since job start (84419s) is within the limit (172800.0s)
[2025-11-28 20:44:11] 2025-11-28 19:43:28,100 | INFO     | monitor loop #5699: job 0:6895881942 is in state 'finished'
[2025-11-28 20:44:11] 2025-11-28 19:43:28,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 20:44:11] 2025-11-28 19:43:28,110 | INFO     | time since job start (84421s) is within the limit (172800.0s)
[2025-11-28 20:44:11] 2025-11-28 19:43:30,117 | INFO     | time since job start (84423s) is within the limit (172800.0s)
[2025-11-28 20:44:11] 2025-11-28 19:43:30,605 | INFO     | monitor loop #5700: job 0:6895881942 is in state 'finished'
[2025-11-28 20:44:11] 2025-11-28 19:43:30,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 20:44:11] 2025-11-28 19:43:32,124 | INFO     | time since job start (84425s) is within the limit (172800.0s)
[2025-11-28 20:44:11] 2025-11-28 19:43:33,112 | INFO     | monitor loop #5701: job 0:6895881942 is in state 'finished'
[2025-11-28 20:44:11] 2025-11-28 19:43:33,112 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 20:44:11] 2025-11-28 19:43:34,131 | INFO     | time since job start (84427s) is within the limit (172800.0s)
[2025-11-28 20:44:11] 2025-11-28 19:43:34,171 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 20:44:11] 2025-11-28 19:43:34,172 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 20:44:11] 2025-11-28 19:43:34,174 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895881942/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 20:44:11] 2025-11-28 19:43:34,174 | INFO     | extracted standard info from prmon json
[2025-11-28 20:44:11] 2025-11-28 19:43:34,174 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 20:44:11] 2025-11-28 19:43:34,175 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 20:44:11] 2025-11-28 19:43:34,208 | INFO     | fitting pss+swap vs Time
[2025-11-28 20:44:11] 2025-11-28 19:43:34,210 | INFO     | sum of square deviations: 806096757969.5817
[2025-11-28 20:44:11] 2025-11-28 19:43:34,288 | INFO     | sum of deviations: 3299848429282.4575
[2025-11-28 20:44:11] 2025-11-28 19:43:34,289 | INFO     | mean x: 1764316987.0734546
[2025-11-28 20:44:11] 2025-11-28 19:43:34,289 | INFO     | mean y: 2837348.629090909
[2025-11-28 20:44:11] 2025-11-28 19:43:34,289 | INFO     | intersect: -7219594178.344488
[2025-11-28 20:44:11] 2025-11-28 19:43:34,291 | INFO     | chi2: 26.200951314704838
[2025-11-28 20:44:11] 2025-11-28 19:43:34,293 | INFO     | sum of square deviations: 797335378746.298
[2025-11-28 20:44:11] 2025-11-28 19:43:34,346 | INFO     | sum of deviations: 3755694773207.6597
[2025-11-28 20:44:11] 2025-11-28 19:43:34,346 | INFO     | mean x: 1764316834.5773723
[2025-11-28 20:44:11] 2025-11-28 19:43:34,346 | INFO     | mean y: 2845282.182481752
[2025-11-28 20:44:11] 2025-11-28 19:43:34,346 | INFO     | intersect: -8307629444.680108
[2025-11-28 20:44:11] 2025-11-28 19:43:34,348 | INFO     | chi2: 22.962931248764598
[2025-11-28 20:44:11] 2025-11-28 19:43:34,348 | INFO     | current chi2=22.962931248764598 (change=12.358406483214052 %)
[2025-11-28 20:44:11] 2025-11-28 19:43:34,348 | INFO     | right removable region: 1369
[2025-11-28 20:44:11] 2025-11-28 19:43:34,350 | INFO     | sum of square deviations: 797334478386.2987
[2025-11-28 20:44:11] 2025-11-28 19:43:34,407 | INFO     | sum of deviations: 2716063793555.4004
[2025-11-28 20:44:11] 2025-11-28 19:43:34,407 | INFO     | mean x: 1764317139.5773723
[2025-11-28 20:44:11] 2025-11-28 19:43:34,407 | INFO     | mean y: 2847508.722627737
[2025-11-28 20:44:11] 2025-11-28 19:43:34,407 | INFO     | intersect: -6007174675.259321
[2025-11-28 20:44:11] 2025-11-28 19:43:34,409 | INFO     | chi2: 21.312405343442453
[2025-11-28 20:44:11] 2025-11-28 19:43:34,409 | INFO     | current chi2=21.312405343442453 (change=18.657894946428037 %)
[2025-11-28 20:44:11] 2025-11-28 19:43:34,409 | INFO     | left removable region: 10
[2025-11-28 20:44:11] 2025-11-28 19:43:34,411 | INFO     | sum of square deviations: 778282518166.9266
[2025-11-28 20:44:11] 2025-11-28 19:43:34,460 | INFO     | sum of deviations: 2781220797611.921
[2025-11-28 20:44:11] 2025-11-28 19:43:34,461 | INFO     | mean x: 1764317109.0860927
[2025-11-28 20:44:11] 2025-11-28 19:43:34,461 | INFO     | mean y: 2866100.932303164
[2025-11-28 20:44:11] 2025-11-28 19:43:34,461 | INFO     | intersect: -6301985058.9396105
[2025-11-28 20:44:11] 2025-11-28 19:43:34,463 | INFO     | chi2: 13.799027073220499
[2025-11-28 20:44:11] 2025-11-28 19:43:34,463 | INFO     | current memory leak: 3.57 B/s (using 1359 data points, chi2=13.80)
[2025-11-28 20:44:11] 2025-11-28 19:43:34,464 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 20:44:11] 2025-11-28 19:43:34,464 | INFO     | ..............................
[2025-11-28 20:44:11] 2025-11-28 19:43:34,464 | INFO     | . Timing measurements:
[2025-11-28 20:44:11] 2025-11-28 19:43:34,464 | INFO     | . get job = 0 s
[2025-11-28 20:44:11] 2025-11-28 19:43:34,465 | INFO     | . initial setup = 3 s
[2025-11-28 20:44:11] 2025-11-28 19:43:34,465 | INFO     | . payload setup = 153 s
[2025-11-28 20:44:11] 2025-11-28 19:43:34,465 | INFO     | . stage-in = 0 s
[2025-11-28 20:44:11] 2025-11-28 19:43:34,465 | INFO     | . payload execution = 83983 s
[2025-11-28 20:44:11] 2025-11-28 19:43:34,465 | INFO     | . stage-out = 5 s
[2025-11-28 20:44:11] 2025-11-28 19:43:34,465 | INFO     | . log creation = 2 s
[2025-11-28 20:44:11] 2025-11-28 19:43:34,465 | INFO     | ..............................
[2025-11-28 20:44:11] 2025-11-28 19:43:34,672 | INFO     | 
[2025-11-28 20:44:11] 2025-11-28 19:43:34,672 | INFO     | job summary report
[2025-11-28 20:44:11] 2025-11-28 19:43:34,672 | INFO     | --------------------------------------------------
[2025-11-28 20:44:11] 2025-11-28 19:43:34,673 | INFO     | PanDA job id: 6895881942
[2025-11-28 20:44:11] 2025-11-28 19:43:34,673 | INFO     | task id: 47556149
[2025-11-28 20:44:11] 2025-11-28 19:43:34,673 | INFO     | errors: (none)
[2025-11-28 20:44:11] 2025-11-28 19:43:34,673 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 20:44:11] 2025-11-28 19:43:34,673 | INFO     | pilot state: finished 
[2025-11-28 20:44:11] 2025-11-28 19:43:34,673 | INFO     | transexitcode: 0
[2025-11-28 20:44:11] 2025-11-28 19:43:34,673 | INFO     | exeerrorcode: 0
[2025-11-28 20:44:11] 2025-11-28 19:43:34,673 | INFO     | exeerrordiag: 
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | exitcode: 0
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | exitmsg: OK
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | cpuconsumptiontime: 316049 s
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | nevents: 1000
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | neventsw: 0
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | pid: 19340
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | pgrp: 19340
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | corecount: 8
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | event service: False
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | sizes: {0: 2284264, 1: 2284292, 12: 2284292, 22: 2284320, 33: 2284348, 44: 2284404, 54: 2284560, 65: 2284588, 76: 2284616, 87: 2284672, 92: 2284962, 97: 2285270, 8
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | --------------------------------------------------
[2025-11-28 20:44:11] 2025-11-28 19:43:34,674 | INFO     | 
[2025-11-28 20:44:11] 2025-11-28 19:43:34,675 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-28 20:44:11] 2025-11-28 19:43:35,279 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,279 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,279 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,280 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | job 6895881942 has completed (purged errors)
[2025-11-28 20:44:11] 2025-11-28 19:43:35,281 | INFO     | overall cleanup function is called
[2025-11-28 20:44:11] 2025-11-28 19:43:36,303 | INFO     | --- collectZombieJob: --- 10, [19340]
[2025-11-28 20:44:11] 2025-11-28 19:43:36,303 | INFO     | zombie collector waiting for pid 19340
[2025-11-28 20:44:11] 2025-11-28 19:43:36,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 20:44:11] 2025-11-28 19:43:36,304 | INFO     | collected zombie processes
[2025-11-28 20:44:11] 2025-11-28 19:43:36,304 | INFO     | will attempt to kill all subprocesses of pid=19340
[2025-11-28 20:44:11] 2025-11-28 19:43:36,432 | INFO     | process IDs to be killed: [19340] (in reverse order)
[2025-11-28 20:44:11] 2025-11-28 19:43:37,362 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 20:44:11] 2025-11-28 19:43:37,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 20:44:11] 2025-11-28 19:43:37,365 | INFO     | did not find any defunct processes belonging to 19340
[2025-11-28 20:44:11] 2025-11-28 19:43:37,368 | INFO     | did not find any defunct processes belonging to 19340
[2025-11-28 20:44:11] 2025-11-28 19:43:37,434 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 20:44:11] 2025-11-28 19:43:37,435 | INFO     | ready for new job
[2025-11-28 20:44:11] 2025-11-28 19:43:37,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 20:44:11] 2025-11-28 19:43:37,440 | INFO     | ***************************************
[2025-11-28 20:44:11] 2025-11-28 19:43:37,440 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 20:44:11] 2025-11-28 19:43:37,440 | INFO     | ***************************************
[2025-11-28 20:44:11] 2025-11-28 19:43:37,440 | INFO     | 
[2025-11-28 20:44:11] 2025-11-28 19:43:37,441 | INFO     | pilot is running in a VM
[2025-11-28 20:44:11] 2025-11-28 19:43:37,441 | INFO     | architecture information:
[2025-11-28 20:44:11] 2025-11-28 19:43:37,449 | INFO     | executing command: cat /etc/os-release
[2025-11-28 20:44:11] 2025-11-28 19:43:37,747 | INFO     | cat /etc/os-release:
[2025-11-28 20:44:11] NAME="CentOS Linux"
[2025-11-28 20:44:11] VERSION="7 (Core)"
[2025-11-28 20:44:11] ID="centos"
[2025-11-28 20:44:11] ID_LIKE="rhel fedora"
[2025-11-28 20:44:11] VERSION_ID="7"
[2025-11-28 20:44:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 20:44:11] ANSI_COLOR="0;31"
[2025-11-28 20:44:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 20:44:11] HOME_URL="https://www.centos.org/"
[2025-11-28 20:44:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 20:44:11] 
[2025-11-28 20:44:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 20:44:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 20:44:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 20:44:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 20:44:11] 
[2025-11-28 20:44:11] 2025-11-28 19:43:37,747 | INFO     | ***************************************
[2025-11-28 20:44:11] 2025-11-28 19:43:38,250 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-28 20:44:11] 2025-11-28 19:43:38,457 | INFO     | sufficient remaining disk space (489151266816 B)
[2025-11-28 20:44:11] 2025-11-28 19:43:38,457 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 20:44:11] 2025-11-28 19:43:38,457 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 20:44:11] 2025-11-28 19:43:38,457 | INFO     | update_server=False
[2025-11-28 20:44:11] 2025-11-28 19:43:38,457 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 20:44:11] 2025-11-28 19:43:38,633 | INFO     | all data control threads have been joined
[2025-11-28 20:44:11] 2025-11-28 19:43:38,950 | INFO     | all payload control threads have been joined
[2025-11-28 20:44:11] 2025-11-28 19:43:39,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 20:44:11] 2025-11-28 19:43:39,134 | INFO     | aborting loop
[2025-11-28 20:44:11] 2025-11-28 19:43:39,242 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 20:44:11] 2025-11-28 19:43:39,463 | INFO     | [job] retrieve thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:39,576 | INFO     | all job control threads have been joined
[2025-11-28 20:44:11] 2025-11-28 19:43:39,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 20:44:11] 2025-11-28 19:43:39,630 | INFO     | [payload] failed_post thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:39,639 | INFO     | [data] control thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:39,684 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:39,691 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:39,746 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:39,801 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:39,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 20:44:11] 2025-11-28 19:43:39,856 | INFO     | [job] validate thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:39,956 | INFO     | [payload] control thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:40,140 | INFO     | [job] job monitor thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:40,370 | INFO     | [payload] validate_post thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:40,582 | INFO     | [job] control thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:40,610 | INFO     | [job] queue monitor thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:40,862 | INFO     | [data] copytool_in thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:41,249 | INFO     | [data] copytool_out thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:43,822 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 20:44:11] 2025-11-28 19:43:54,193 | INFO     | [monitor] cgroup control has ended
[2025-11-28 20:44:11] 2025-11-28 19:43:55,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399982454592)>', '<ExcThread(monitor, started 140399687476992)>']
[2025-11-28 20:44:11] 2025-11-28 19:44:00,520 | INFO     | all workflow threads have been joined
[2025-11-28 20:44:11] 2025-11-28 19:44:00,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 20:44:11] 2025-11-28 19:44:00,521 | INFO     | traces error code: 0
[2025-11-28 20:44:11] 2025-11-28 19:44:00,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 20:44:11] 2025-11-28 19:44:07,297 | INFO     | PID=12734 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 20:44:11] 2025-11-28 19:44:07,297 | INFO     | .. there are 9 such processes running
[2025-11-28 20:44:11] 2025-11-28 19:44:07,298 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 20:44:11] 2025-11-28 19:44:07,299 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 20:44:11] 2025-11-28 19:44:07,299 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 20:44:11] 2025-11-28 19:44:07,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 20:44:11] 2025-11-28 19:44:07,299 | CRITICAL | thread 'MainThread' is not alive
[2025-11-28 20:44:11] 2025-11-28 19:44:07,299 | INFO     | [monitor] control thread has ended
[2025-11-28 20:44:11] 2025-11-28 19:44:07,566 [wrapper] ==== pilot stdout END ====
[2025-11-28 20:44:11] 2025-11-28 19:44:07,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 20:44:11] 2025-11-28 19:44:07,752 [wrapper] pilotpid: 12734
[2025-11-28 20:44:11] 2025-11-28 19:44:07,843 [wrapper] Pilot exit status: 0
[2025-11-28 20:44:11] 2025-11-28 19:44:08,162 [wrapper] pandaids: 6895881942
[2025-11-28 20:44:11] 2025-11-28 19:44:08,911 [wrapper] cleanup supervisor_pilot 30949 12735
[2025-11-28 20:44:11] 2025-11-28 19:44:08,961 [wrapper] Test setup, not cleaning
[2025-11-28 20:44:11] 2025-11-28 19:44:09,063 [wrapper] apfmon messages muted
[2025-11-28 20:44:11] 2025-11-28 19:44:09,144 [wrapper] ==== wrapper stdout END ====
[2025-11-28 20:44:11] 2025-11-28 19:44:09,248 [wrapper] ==== wrapper stderr END ====
[2025-11-28 20:44:11]  *** Error codes and diagnostics ***
[2025-11-28 20:44:11]     "exeErrorCode": 0,
[2025-11-28 20:44:11]     "exeErrorDiag": "",
[2025-11-28 20:44:11]     "pilotErrorCode": 0,
[2025-11-28 20:44:11]     "pilotErrorDiag": "",
[2025-11-28 20:44:11]  *** Listing of results directory ***
[2025-11-28 20:44:11] total 1341924
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc    576529 Nov 24 17:06 pilot3.tar.gz
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc      5112 Nov 24 17:11 queuedata.json
[2025-11-28 20:44:11] -rwx------. 1 boinc boinc     36292 Nov 24 17:13 runpilot2-wrapper.sh
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc       100 Nov 27 21:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 20:44:11] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 21:12 run_atlas
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc       105 Nov 27 21:12 job.xml
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc      6392 Nov 27 21:12 init_data.xml
[2025-11-28 20:44:11] -rw-r--r--. 2 boinc boinc 411201574 Nov 27 21:12 EVNT.47483658._001379.pool.root.1
[2025-11-28 20:44:11] -rw-r--r--. 2 boinc boinc     15847 Nov 27 21:12 start_atlas.sh
[2025-11-28 20:44:11] drwxrwx--x. 2 boinc boinc        68 Nov 27 21:12 shared
[2025-11-28 20:44:11] -rw-r--r--. 2 boinc boinc    590103 Nov 27 21:12 input.tar.gz
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc         0 Nov 27 21:12 boinc_lockfile
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc      2785 Nov 27 21:12 pandaJob.out
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc    991500 Nov 27 21:16 agis_schedconf.cvmfs.json
[2025-11-28 20:44:11] drwx------. 5 boinc boinc      4096 Nov 27 21:16 pilot3
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc       533 Nov 28 20:19 boinc_task_state.xml
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc 931524013 Nov 28 20:40 HITS.47556149._003658.pool.root.1
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc      1033 Nov 28 20:41 memory_monitor_summary.json
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc   1516240 Nov 28 20:41 agis_ddmendpoints.agis.ALL.json
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc   2468233 Nov 28 20:42 log.47556149._003658.job.log.tgz.1
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc      8628 Nov 28 20:43 heartbeat.json
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc        29 Nov 28 20:43 wrapper_checkpoint.txt
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc      8192 Nov 28 20:43 boinc_mmap_file
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc        95 Nov 28 20:44 pilot_heartbeat.json
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc       890 Nov 28 20:44 pilotlog.txt
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc  11282417 Nov 28 20:44 log.47556149._003658.job.log.1
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc       353 Nov 28 20:44 output.list
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc       620 Nov 28 20:44 runtime_log
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc  13772800 Nov 28 20:44 result.tar.gz
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc       662 Nov 28 20:44 w7XMDmLNoh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5kLKDmDY6Q5m.diag
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc      8817 Nov 28 20:44 runtime_log.err
[2025-11-28 20:44:11] -rw-r--r--. 1 boinc boinc     21416 Nov 28 20:44 stderr.txt
[2025-11-28 20:44:11] HITS file was successfully produced:
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc 931524013 Nov 28 20:40 shared/HITS.pool.root.1
[2025-11-28 20:44:11]  *** Contents of shared directory: ***
[2025-11-28 20:44:11] total 1325308
[2025-11-28 20:44:11] -rw-r--r--. 2 boinc boinc 411201574 Nov 27 21:12 ATLAS.root_0
[2025-11-28 20:44:11] -rw-r--r--. 2 boinc boinc     15847 Nov 27 21:12 start_atlas.sh
[2025-11-28 20:44:11] -rw-r--r--. 2 boinc boinc    590103 Nov 27 21:12 input.tar.gz
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc 931524013 Nov 28 20:40 HITS.pool.root.1
[2025-11-28 20:44:11] -rw-------. 1 boinc boinc  13772800 Nov 28 20:44 result.tar.gz
20:44:13 (8947): run_atlas exited; CPU time 316618.515290
20:44:13 (8947): called boinc_finish(0)

</stderr_txt>
]]>

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