Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:45:52 (10340): wrapper (7.7.26015): starting
09:45:52 (10340): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 09:45:52] Arguments: --nthreads 8
[2025-11-25 09:45:52] Threads: 8
[2025-11-25 09:45:52] Checking for CVMFS
[2025-11-25 09:45:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:45:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:45:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:45:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:45:52] 2.11.2.0 5808 169069 108252 153285 3 81 16921898 18432000 2827 130560 0 112089996 99.944 8966175 6945 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-25 09:45:52] CVMFS is ok
[2025-11-25 09:45:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:45:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:45:52] Further information can be found at the LHC@home message board.
[2025-11-25 09:45:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:45:52] Checking for apptainer binary...
[2025-11-25 09:45:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:45:52] Running /usr/bin/apptainer --version
[2025-11-25 09:45:52] apptainer version 1.3.2-1.el7
[2025-11-25 09:45:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:45:53] c-9-34.aglt2.org
[2025-11-25 09:45:53] apptainer works
[2025-11-25 09:45:53] Set ATHENA_PROC_NUMBER=8
[2025-11-25 09:45:53] Set ATHENA_CORE_NUMBER=8
[2025-11-25 09:45:53] Starting ATLAS job with PandaID=6895883512
[2025-11-25 09:45:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:54:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:54:54] 2025-11-26 07:54:04,540 | INFO     | time since job start (61679s) is within the limit (172800.0s)
[2025-11-26 02:54:54] 2025-11-26 07:54:05,863 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 02:54:54] 2025-11-26 07:54:05,867 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.941687500001
[2025-11-26 02:54:54] 2025-11-26 07:54:05,871 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895883512/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:54:54] 2025-11-26 07:54:05,871 | INFO     | extracted standard info from prmon json
[2025-11-26 02:54:54] 2025-11-26 07:54:05,871 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:54:54] 2025-11-26 07:54:05,871 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:54:54] 2025-11-26 07:54:05,884 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:54:54] 2025-11-26 07:54:05,885 | INFO     | sum of square deviations: 320428466479.77637
[2025-11-26 02:54:54] 2025-11-26 07:54:05,901 | INFO     | sum of deviations: 1727467706528.5432
[2025-11-26 02:54:54] 2025-11-26 07:54:05,901 | INFO     | mean x: 1764112796.6369932
[2025-11-26 02:54:54] 2025-11-26 07:54:05,901 | INFO     | mean y: 2865339.862512364
[2025-11-26 02:54:54] 2025-11-26 07:54:05,901 | INFO     | intersect: -9507675094.772993
[2025-11-26 02:54:54] 2025-11-26 07:54:05,902 | INFO     | chi2: 4.947437281412394
[2025-11-26 02:54:54] 2025-11-26 07:54:05,903 | INFO     | sum of square deviations: 315697997455.23694
[2025-11-26 02:54:54] 2025-11-26 07:54:05,926 | INFO     | sum of deviations: 2025121816638.545
[2025-11-26 02:54:54] 2025-11-26 07:54:05,926 | INFO     | mean x: 1764112644.1401591
[2025-11-26 02:54:54] 2025-11-26 07:54:05,927 | INFO     | mean y: 2874927.464214712
[2025-11-26 02:54:54] 2025-11-26 07:54:05,927 | INFO     | intersect: -11313455969.321722
[2025-11-26 02:54:54] 2025-11-26 07:54:05,928 | INFO     | chi2: 2.3120651688900673
[2025-11-26 02:54:54] 2025-11-26 07:54:05,928 | INFO     | current chi2=2.3120651688900673 (change=53.26741831419398 %)
[2025-11-26 02:54:54] 2025-11-26 07:54:05,930 | INFO     | sum of square deviations: 311014320005.67834
[2025-11-26 02:54:54] 2025-11-26 07:54:05,960 | INFO     | sum of deviations: 2104382519081.2014
[2025-11-26 02:54:54] 2025-11-26 07:54:05,960 | INFO     | mean x: 1764112491.6433566
[2025-11-26 02:54:54] 2025-11-26 07:54:05,960 | INFO     | mean y: 2877504.88011988
[2025-11-26 02:54:54] 2025-11-26 07:54:05,960 | INFO     | intersect: -11933445842.029703
[2025-11-26 02:54:54] 2025-11-26 07:54:05,962 | INFO     | chi2: 2.008358574386919
[2025-11-26 02:54:54] 2025-11-26 07:54:05,962 | INFO     | current chi2=2.008358574386919 (change=13.135728118292889 %)
[2025-11-26 02:54:54] 2025-11-26 07:54:05,962 | INFO     | right removable region: 1000
[2025-11-26 02:54:54] 2025-11-26 07:54:05,963 | INFO     | sum of square deviations: 315697666042.5163
[2025-11-26 02:54:54] 2025-11-26 07:54:05,980 | INFO     | sum of deviations: 1499407948393.2854
[2025-11-26 02:54:54] 2025-11-26 07:54:05,981 | INFO     | mean x: 1764112949.139165
[2025-11-26 02:54:54] 2025-11-26 07:54:05,981 | INFO     | mean y: 2872679.269383698
[2025-11-26 02:54:54] 2025-11-26 07:54:05,981 | INFO     | intersect: -8375792297.767709
[2025-11-26 02:54:54] 2025-11-26 07:54:05,982 | INFO     | chi2: 3.2094148643246863
[2025-11-26 02:54:54] 2025-11-26 07:54:05,982 | INFO     | current chi2=3.2094148643246863 (change=35.12975138901684 %)
[2025-11-26 02:54:54] 2025-11-26 07:54:05,982 | INFO     | sum of square deviations: 311013902889.3625
[2025-11-26 02:54:54] 2025-11-26 07:54:06,001 | INFO     | sum of deviations: 1437601247191.5264
[2025-11-26 02:54:54] 2025-11-26 07:54:06,001 | INFO     | mean x: 1764113101.6373627
[2025-11-26 02:54:54] 2025-11-26 07:54:06,001 | INFO     | mean y: 2874691.1998002
[2025-11-26 02:54:54] 2025-11-26 07:54:06,001 | INFO     | intersect: -8151394849.615397
[2025-11-26 02:54:54] 2025-11-26 07:54:06,002 | INFO     | chi2: 3.1692441516847065
[2025-11-26 02:54:54] 2025-11-26 07:54:06,002 | INFO     | current chi2=3.1692441516847065 (change=1.251652227529404 %)
[2025-11-26 02:54:54] 2025-11-26 07:54:06,002 | INFO     | left removable region: 20
[2025-11-26 02:54:54] 2025-11-26 07:54:06,003 | INFO     | sum of square deviations: 291847749669.4248
[2025-11-26 02:54:54] 2025-11-26 07:54:06,019 | INFO     | sum of deviations: 1725100974985.5762
[2025-11-26 02:54:54] 2025-11-26 07:54:06,019 | INFO     | mean x: 1764113071.144898
[2025-11-26 02:54:54] 2025-11-26 07:54:06,019 | INFO     | mean y: 2889807.355102041
[2025-11-26 02:54:54] 2025-11-26 07:54:06,019 | INFO     | intersect: -10424715622.064758
[2025-11-26 02:54:54] 2025-11-26 07:54:06,021 | INFO     | chi2: 0.20473899031651463
[2025-11-26 02:54:54] 2025-11-26 07:54:06,021 | INFO     | current memory leak: 5.91 B/s (using 980 data points, chi2=0.20)
[2025-11-26 02:54:54] 2025-11-26 07:54:06,022 | INFO     | could have reported an average CPU frequency of 2999 MHz (37 samples)
[2025-11-26 02:54:54] 2025-11-26 07:54:06,022 | INFO     | ..............................
[2025-11-26 02:54:54] 2025-11-26 07:54:06,022 | INFO     | . Timing measurements:
[2025-11-26 02:54:54] 2025-11-26 07:54:06,022 | INFO     | . get job = 0 s
[2025-11-26 02:54:54] 2025-11-26 07:54:06,023 | INFO     | . initial setup = 2 s
[2025-11-26 02:54:54] 2025-11-26 07:54:06,023 | INFO     | . payload setup = 5 s
[2025-11-26 02:54:54] 2025-11-26 07:54:06,023 | INFO     | . stage-in = 0 s
[2025-11-26 02:54:54] 2025-11-26 07:54:06,023 | INFO     | . payload execution = 61644 s
[2025-11-26 02:54:54] 2025-11-26 07:54:06,023 | INFO     | . stage-out = 3 s
[2025-11-26 02:54:54] 2025-11-26 07:54:06,023 | INFO     | . log creation = 0 s
[2025-11-26 02:54:54] 2025-11-26 07:54:06,023 | INFO     | ..............................
[2025-11-26 02:54:54] 2025-11-26 07:54:06,504 | INFO     | 
[2025-11-26 02:54:54] 2025-11-26 07:54:06,504 | INFO     | job summary report
[2025-11-26 02:54:54] 2025-11-26 07:54:06,504 | INFO     | --------------------------------------------------
[2025-11-26 02:54:54] 2025-11-26 07:54:06,504 | INFO     | PanDA job id: 6895883512
[2025-11-26 02:54:54] 2025-11-26 07:54:06,504 | INFO     | task id: 47556161
[2025-11-26 02:54:54] 2025-11-26 07:54:06,504 | INFO     | errors: (none)
[2025-11-26 02:54:54] 2025-11-26 07:54:06,505 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:54:54] 2025-11-26 07:54:06,505 | INFO     | pilot state: finished 
[2025-11-26 02:54:54] 2025-11-26 07:54:06,505 | INFO     | transexitcode: 0
[2025-11-26 02:54:54] 2025-11-26 07:54:06,505 | INFO     | exeerrorcode: 0
[2025-11-26 02:54:54] 2025-11-26 07:54:06,505 | INFO     | exeerrordiag: 
[2025-11-26 02:54:54] 2025-11-26 07:54:06,505 | INFO     | exitcode: 0
[2025-11-26 02:54:54] 2025-11-26 07:54:06,506 | INFO     | exitmsg: OK
[2025-11-26 02:54:54] 2025-11-26 07:54:06,506 | INFO     | cpuconsumptiontime: 475738 s
[2025-11-26 02:54:54] 2025-11-26 07:54:06,506 | INFO     | nevents: 1000
[2025-11-26 02:54:54] 2025-11-26 07:54:06,506 | INFO     | neventsw: 0
[2025-11-26 02:54:54] 2025-11-26 07:54:06,506 | INFO     | pid: 21501
[2025-11-26 02:54:54] 2025-11-26 07:54:06,506 | INFO     | pgrp: 21501
[2025-11-26 02:54:54] 2025-11-26 07:54:06,506 | INFO     | corecount: 8
[2025-11-26 02:54:54] 2025-11-26 07:54:06,507 | INFO     | event service: False
[2025-11-26 02:54:54] 2025-11-26 07:54:06,507 | INFO     | sizes: {0: 2284136, 1: 2284335, 4: 2284597, 12: 2284625, 61654: 2337311, 61658: 2346305, 61661: 2346489, 61666: 2346735}
[2025-11-26 02:54:54] 2025-11-26 07:54:06,507 | INFO     | --------------------------------------------------
[2025-11-26 02:54:54] 2025-11-26 07:54:06,507 | INFO     | 
[2025-11-26 02:54:54] 2025-11-26 07:54:06,507 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 02:54:54] 2025-11-26 07:54:06,527 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,528 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,528 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,530 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:54:54] 2025-11-26 07:54:06,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:54:54] 2025-11-26 07:54:06,530 | INFO     | job 6895883512 has completed (purged errors)
[2025-11-26 02:54:54] 2025-11-26 07:54:06,530 | INFO     | overall cleanup function is called
[2025-11-26 02:54:54] 2025-11-26 07:54:07,543 | INFO     | --- collectZombieJob: --- 10, [21501]
[2025-11-26 02:54:54] 2025-11-26 07:54:07,543 | INFO     | zombie collector waiting for pid 21501
[2025-11-26 02:54:54] 2025-11-26 07:54:07,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:54:54] 2025-11-26 07:54:07,544 | INFO     | collected zombie processes
[2025-11-26 02:54:54] 2025-11-26 07:54:07,544 | INFO     | will attempt to kill all subprocesses of pid=21501
[2025-11-26 02:54:54] 2025-11-26 07:54:07,789 | INFO     | process IDs to be killed: [21501] (in reverse order)
[2025-11-26 02:54:54] 2025-11-26 07:54:07,879 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:54:54] 2025-11-26 07:54:07,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:54:54] 2025-11-26 07:54:07,885 | INFO     | did not find any defunct processes belonging to 21501
[2025-11-26 02:54:54] 2025-11-26 07:54:07,890 | INFO     | did not find any defunct processes belonging to 21501
[2025-11-26 02:54:54] 2025-11-26 07:54:07,891 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:54:54] 2025-11-26 07:54:07,891 | INFO     | ready for new job
[2025-11-26 02:54:54] 2025-11-26 07:54:07,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:54:54] 2025-11-26 07:54:07,895 | INFO     | ***************************************
[2025-11-26 02:54:54] 2025-11-26 07:54:07,895 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:54:54] 2025-11-26 07:54:07,895 | INFO     | ***************************************
[2025-11-26 02:54:54] 2025-11-26 07:54:07,895 | INFO     | 
[2025-11-26 02:54:54] 2025-11-26 07:54:07,896 | INFO     | architecture information:
[2025-11-26 02:54:54] 2025-11-26 07:54:07,897 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:54:54] 2025-11-26 07:54:07,906 | INFO     | cat /etc/os-release:
[2025-11-26 02:54:54] NAME="CentOS Linux"
[2025-11-26 02:54:54] VERSION="7 (Core)"
[2025-11-26 02:54:54] ID="centos"
[2025-11-26 02:54:54] ID_LIKE="rhel fedora"
[2025-11-26 02:54:54] VERSION_ID="7"
[2025-11-26 02:54:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:54:54] ANSI_COLOR="0;31"
[2025-11-26 02:54:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:54:54] HOME_URL="https://www.centos.org/"
[2025-11-26 02:54:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:54:54] 
[2025-11-26 02:54:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:54:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:54:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:54:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:54:54] 
[2025-11-26 02:54:54] 2025-11-26 07:54:07,907 | INFO     | ***************************************
[2025-11-26 02:54:54] 2025-11-26 07:54:08,410 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 02:54:54] 2025-11-26 07:54:08,438 | INFO     | sufficient remaining disk space (101289295872 B)
[2025-11-26 02:54:54] 2025-11-26 07:54:08,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:54:54] 2025-11-26 07:54:08,438 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:54:54] 2025-11-26 07:54:08,438 | INFO     | update_server=False
[2025-11-26 02:54:54] 2025-11-26 07:54:08,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:54:54] 2025-11-26 07:54:08,781 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 02:54:54] 2025-11-26 07:54:08,781 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 02:54:54] 2025-11-26 07:54:08,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:54:54] 2025-11-26 07:54:08,782 | INFO     | will abort loop
[2025-11-26 02:54:54] 2025-11-26 07:54:09,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:54:54] 2025-11-26 07:54:09,123 | INFO     | all job control threads have been joined
[2025-11-26 02:54:54] 2025-11-26 07:54:09,306 | INFO     | all payload control threads have been joined
[2025-11-26 02:54:54] 2025-11-26 07:54:09,397 | INFO     | all data control threads have been joined
[2025-11-26 02:54:54] 2025-11-26 07:54:09,444 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:09,502 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:09,517 | INFO     | [job] validate thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:09,788 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:09,971 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:10,129 | INFO     | [job] control thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:10,309 | INFO     | [payload] control thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:10,402 | INFO     | [data] control thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:10,592 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:10,748 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:10,769 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:10,778 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:10,836 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:11,102 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:11,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:54:54] 2025-11-26 07:54:11,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:54:54] 2025-11-26 07:54:12,135 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:15,465 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:54:54] 2025-11-26 07:54:37,970 | INFO     | PID=14501 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 02:54:54] 2025-11-26 07:54:37,970 | INFO     | .. there are 4 such processes running
[2025-11-26 02:54:54] 2025-11-26 07:54:37,970 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:54:54] 2025-11-26 07:54:37,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:54:54] 2025-11-26 07:54:37,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:54:54] 2025-11-26 07:54:48,272 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:54:54] 2025-11-26 07:54:49,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253148436288)>', '<ExcThread(monitor, started 140252853282560)>']
[2025-11-26 02:54:54] 2025-11-26 07:54:50,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:54:54] 2025-11-26 07:54:50,031 | INFO     | [monitor] control thread has ended
[2025-11-26 02:54:54] 2025-11-26 07:54:54,631 | INFO     | all workflow threads have been joined
[2025-11-26 02:54:54] 2025-11-26 07:54:54,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:54:54] 2025-11-26 07:54:54,632 | INFO     | traces error code: 0
[2025-11-26 02:54:54] 2025-11-26 07:54:54,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:54:54] 2025-11-26 07:54:54,732 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:54:54] 2025-11-26 07:54:54,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:54:54] 2025-11-26 07:54:54,736 [wrapper] pilotpid: 14501
[2025-11-26 02:54:54] 2025-11-26 07:54:54,738 [wrapper] Pilot exit status: 0
[2025-11-26 02:54:54] 2025-11-26 07:54:54,745 [wrapper] pandaids: 6895883512
[2025-11-26 02:54:54] 2025-11-26 07:54:54,789 [wrapper] cleanup supervisor_pilot 17891 14502
[2025-11-26 02:54:54] 2025-11-26 07:54:54,792 [wrapper] Test setup, not cleaning
[2025-11-26 02:54:54] 2025-11-26 07:54:54,794 [wrapper] apfmon messages muted
[2025-11-26 02:54:54] 2025-11-26 07:54:54,796 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:54:54] 2025-11-26 07:54:54,798 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:54:54]  *** Error codes and diagnostics ***
[2025-11-26 02:54:54]     "exeErrorCode": 0,
[2025-11-26 02:54:54]     "exeErrorDiag": "",
[2025-11-26 02:54:54]     "pilotErrorCode": 0,
[2025-11-26 02:54:54]     "pilotErrorDiag": "",
[2025-11-26 02:54:54]  *** Listing of results directory ***
[2025-11-26 02:54:54] total 1318884
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 11:43 queuedata.json
[2025-11-26 02:54:54] -rwx------ 1 boincer umatlas     36292 Nov 24 11:44 runpilot2-wrapper.sh
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas       100 Nov 25 09:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:54:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 09:45 run_atlas
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas       105 Nov 25 09:45 job.xml
[2025-11-26 02:54:54] -rw-r--r-- 2 boincer umatlas 408763292 Nov 25 09:45 EVNT.47483658._002055.pool.root.1
[2025-11-26 02:54:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 09:45 start_atlas.sh
[2025-11-26 02:54:54] drwxrwx--x 2 boincer umatlas      4096 Nov 25 09:45 shared
[2025-11-26 02:54:54] -rw-r--r-- 2 boincer umatlas    590099 Nov 25 09:45 input.tar.gz
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas         0 Nov 25 09:45 boinc_lockfile
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas      2782 Nov 25 09:45 pandaJob.out
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas        57 Nov 25 09:45 setup.sh.local
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas    991909 Nov 25 09:46 agis_schedconf.cvmfs.json
[2025-11-26 02:54:54] drwx------ 5 boincer umatlas      4096 Nov 25 09:46 pilot3
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas       533 Nov 26 02:43 boinc_task_state.xml
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas      6038 Nov 26 02:49 init_data.xml
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas 916669198 Nov 26 02:53 HITS.47556161._000381.pool.root.1
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas        95 Nov 26 02:53 pilot_heartbeat.json
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas      1063 Nov 26 02:53 memory_monitor_summary.json
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas   1516240 Nov 26 02:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas   2195541 Nov 26 02:53 log.47556161._000381.job.log.tgz.1
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas      8637 Nov 26 02:54 heartbeat.json
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 02:54 boinc_mmap_file
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas        29 Nov 26 02:54 wrapper_checkpoint.txt
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas      5008 Nov 26 02:54 pilotlog.txt
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas   8395132 Nov 26 02:54 log.47556161._000381.job.log.1
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas       353 Nov 26 02:54 output.list
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas       620 Nov 26 02:54 runtime_log
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas  10608640 Nov 26 02:54 result.tar.gz
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas       665 Nov 26 02:54 xmvNDmvqoh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmp7IKDmFLF80n.diag
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas      9333 Nov 26 02:54 runtime_log.err
[2025-11-26 02:54:54] -rw-r--r-- 1 boincer umatlas     21278 Nov 26 02:54 stderr.txt
[2025-11-26 02:54:54] HITS file was successfully produced:
[2025-11-26 02:54:54] -rw------- 1 boincer umatlas 916669198 Nov 26 02:53 shared/HITS.pool.root.1
[2025-11-26 02:54:54]  *** Contents of shared directory: ***
[2025-11-26 02:54:55] total 1305336
[2025-11-26 02:54:55] -rw-r--r-- 2 boincer umatlas 408763292 Nov 25 09:45 ATLAS.root_0
[2025-11-26 02:54:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 09:45 start_atlas.sh
[2025-11-26 02:54:55] -rw-r--r-- 2 boincer umatlas    590099 Nov 25 09:45 input.tar.gz
[2025-11-26 02:54:55] -rw------- 1 boincer umatlas 916669198 Nov 26 02:53 HITS.pool.root.1
[2025-11-26 02:54:55] -rw------- 1 boincer umatlas  10608640 Nov 26 02:54 result.tar.gz
02:54:56 (10340): run_atlas exited; CPU time 476138.411555
02:54:56 (10340): called boinc_finish(0)

</stderr_txt>
]]>

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