Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:10:37 (1342037): wrapper (7.7.26015): starting
09:10:37 (1342037): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 09:10:37] Arguments: --nthreads 8
[2025-11-25 09:10:37] Threads: 8
[2025-11-25 09:10:37] Checking for CVMFS
[2025-11-25 09:10:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:10:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:10:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:10:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:10:38] 2.10.1.0 4440 250533 170160 153284 3 81 9275175 18432000 3769 130560 2 278040721 99.988 10137091 6487 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-25 09:10:38] CVMFS is ok
[2025-11-25 09:10:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:10:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:10:38] Further information can be found at the LHC@home message board.
[2025-11-25 09:10:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:10:38] Checking for apptainer binary...
[2025-11-25 09:10:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:10:38] Running /usr/bin/apptainer --version
[2025-11-25 09:10:38] apptainer version 1.1.9-1.el8
[2025-11-25 09:10:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:10:39] c-16-31.aglt2.org
[2025-11-25 09:10:39] apptainer works
[2025-11-25 09:10:39] Set ATHENA_PROC_NUMBER=8
[2025-11-25 09:10:39] Set ATHENA_CORE_NUMBER=8
[2025-11-25 09:10:39] Starting ATLAS job with PandaID=6895882692
[2025-11-25 09:10:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:07:04]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:07:04] 2025-11-26 07:06:26,603 | INFO     | time since job start (60935s) is within the limit (172800.0s)
[2025-11-26 02:07:04] 2025-11-26 07:06:26,810 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:07:04] 2025-11-26 07:06:26,810 | INFO     | job 6895882692 has state=finished
[2025-11-26 02:07:04] 2025-11-26 07:06:26,811 | INFO     | preparing for final server update for job 6895882692 in state='finished'
[2025-11-26 02:07:04] 2025-11-26 07:06:26,811 | INFO     | this job has now completed (state=finished)
[2025-11-26 02:07:04] 2025-11-26 07:06:26,812 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 02:07:04] 2025-11-26 07:06:26,812 | INFO     | log transfer has been attempted: DONE
[2025-11-26 02:07:04] 2025-11-26 07:06:26,812 | INFO     | job 6895882692 has finished - writing final server update
[2025-11-26 02:07:04] 2025-11-26 07:06:26,813 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 02:07:04] 2025-11-26 07:06:26,814 | INFO     | executing command: lscpu
[2025-11-26 02:07:04] 2025-11-26 07:06:26,879 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 02:07:04] 2025-11-26 07:06:26,973 | INFO     | monitor loop #4386: job 0:6895882692 is in state 'finished'
[2025-11-26 02:07:04] 2025-11-26 07:06:26,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:07:04] 2025-11-26 07:06:28,611 | INFO     | time since job start (60937s) is within the limit (172800.0s)
[2025-11-26 02:07:04] 2025-11-26 07:06:29,477 | INFO     | monitor loop #4387: job 0:6895882692 is in state 'finished'
[2025-11-26 02:07:04] 2025-11-26 07:06:29,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:07:04] 2025-11-26 07:06:30,616 | INFO     | time since job start (60939s) is within the limit (172800.0s)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,046 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 02:07:04] 2025-11-26 07:06:31,057 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2949.85725
[2025-11-26 02:07:04] 2025-11-26 07:06:31,065 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895882692/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,066 | INFO     | extracted standard info from prmon json
[2025-11-26 02:07:04] 2025-11-26 07:06:31,066 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:07:04] 2025-11-26 07:06:31,066 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:07:04] 2025-11-26 07:06:31,092 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:07:04] 2025-11-26 07:06:31,094 | INFO     | sum of square deviations: 309152042643.081
[2025-11-26 02:07:04] 2025-11-26 07:06:31,123 | INFO     | sum of deviations: 29904569762301.75
[2025-11-26 02:07:04] 2025-11-26 07:06:31,124 | INFO     | mean x: 1764110317.054054
[2025-11-26 02:07:04] 2025-11-26 07:06:31,124 | INFO     | mean y: 4359053.356356356
[2025-11-26 02:07:04] 2025-11-26 07:06:31,124 | INFO     | intersect: -170639702016.76675
[2025-11-26 02:07:04] 2025-11-26 07:06:31,125 | INFO     | chi2: 78.35975664024788
[2025-11-26 02:07:04] 2025-11-26 07:06:31,127 | INFO     | sum of square deviations: 304533302745.56573
[2025-11-26 02:07:04] 2025-11-26 07:06:31,155 | INFO     | sum of deviations: 30459821202749.656
[2025-11-26 02:07:04] 2025-11-26 07:06:31,155 | INFO     | mean x: 1764110164.554326
[2025-11-26 02:07:04] 2025-11-26 07:06:31,155 | INFO     | mean y: 4377384.089537224
[2025-11-26 02:07:04] 2025-11-26 07:06:31,155 | INFO     | intersect: -176444239925.8295
[2025-11-26 02:07:04] 2025-11-26 07:06:31,157 | INFO     | chi2: 81.19028944443426
[2025-11-26 02:07:04] 2025-11-26 07:06:31,157 | INFO     | current chi2=81.19028944443426 (change=-3.6122276606618904 %)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,157 | INFO     | right removable region: 993
[2025-11-26 02:07:04] 2025-11-26 07:06:31,158 | INFO     | sum of square deviations: 304533269805.56573
[2025-11-26 02:07:04] 2025-11-26 07:06:31,187 | INFO     | sum of deviations: 29403374487520.945
[2025-11-26 02:07:04] 2025-11-26 07:06:31,187 | INFO     | mean x: 1764110469.554326
[2025-11-26 02:07:04] 2025-11-26 07:06:31,187 | INFO     | mean y: 4375591.7132796785
[2025-11-26 02:07:04] 2025-11-26 07:06:31,187 | INFO     | intersect: -170324471587.38156
[2025-11-26 02:07:04] 2025-11-26 07:06:31,188 | INFO     | chi2: 75.99858848508599
[2025-11-26 02:07:04] 2025-11-26 07:06:31,188 | INFO     | current chi2=75.99858848508599 (change=3.0132407965508228 %)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,188 | INFO     | left removable region: 10
[2025-11-26 02:07:04] 2025-11-26 07:06:31,189 | INFO     | sum of square deviations: 294534423299.0336
[2025-11-26 02:07:04] 2025-11-26 07:06:31,206 | INFO     | sum of deviations: 29695089820163.105
[2025-11-26 02:07:04] 2025-11-26 07:06:31,207 | INFO     | mean x: 1764110439.0549338
[2025-11-26 02:07:04] 2025-11-26 07:06:31,207 | INFO     | mean y: 4405798.683621567
[2025-11-26 02:07:04] 2025-11-26 07:06:31,207 | INFO     | intersect: -177853982886.96753
[2025-11-26 02:07:04] 2025-11-26 07:06:31,207 | INFO     | chi2: 79.43530160359037
[2025-11-26 02:07:04] 2025-11-26 07:06:31,208 | INFO     | current memory leak: 100.82 B/s (using 983 data points, chi2=79.44)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,208 | INFO     | could have reported an average CPU frequency of 2912 MHz (37 samples)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,208 | INFO     | ..............................
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | . Timing measurements:
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | . get job = 0 s
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | . initial setup = 2 s
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | . payload setup = 5 s
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | . stage-in = 0 s
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | . payload execution = 60900 s
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | . stage-out = 3 s
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | . log creation = 0 s
[2025-11-26 02:07:04] 2025-11-26 07:06:31,209 | INFO     | ..............................
[2025-11-26 02:07:04] 2025-11-26 07:06:31,300 | INFO     | 
[2025-11-26 02:07:04] 2025-11-26 07:06:31,300 | INFO     | job summary report
[2025-11-26 02:07:04] 2025-11-26 07:06:31,301 | INFO     | --------------------------------------------------
[2025-11-26 02:07:04] 2025-11-26 07:06:31,301 | INFO     | PanDA job id: 6895882692
[2025-11-26 02:07:04] 2025-11-26 07:06:31,301 | INFO     | task id: 47556149
[2025-11-26 02:07:04] 2025-11-26 07:06:31,301 | INFO     | errors: (none)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,301 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:07:04] 2025-11-26 07:06:31,301 | INFO     | pilot state: finished 
[2025-11-26 02:07:04] 2025-11-26 07:06:31,302 | INFO     | transexitcode: 0
[2025-11-26 02:07:04] 2025-11-26 07:06:31,302 | INFO     | exeerrorcode: 0
[2025-11-26 02:07:04] 2025-11-26 07:06:31,302 | INFO     | exeerrordiag: 
[2025-11-26 02:07:04] 2025-11-26 07:06:31,302 | INFO     | exitcode: 0
[2025-11-26 02:07:04] 2025-11-26 07:06:31,302 | INFO     | exitmsg: OK
[2025-11-26 02:07:04] 2025-11-26 07:06:31,302 | INFO     | cpuconsumptiontime: 470389 s
[2025-11-26 02:07:04] 2025-11-26 07:06:31,303 | INFO     | nevents: 1000
[2025-11-26 02:07:04] 2025-11-26 07:06:31,303 | INFO     | neventsw: 0
[2025-11-26 02:07:04] 2025-11-26 07:06:31,303 | INFO     | pid: 1364565
[2025-11-26 02:07:04] 2025-11-26 07:06:31,303 | INFO     | pgrp: 1364565
[2025-11-26 02:07:04] 2025-11-26 07:06:31,303 | INFO     | corecount: 8
[2025-11-26 02:07:04] 2025-11-26 07:06:31,303 | INFO     | event service: False
[2025-11-26 02:07:04] 2025-11-26 07:06:31,304 | INFO     | sizes: {0: 2284087, 1: 2284342, 5: 2284604, 12: 2284660, 60909: 2337263, 60910: 2337262, 60914: 2346468, 60918: 2346524, 60924: 2346770}
[2025-11-26 02:07:04] 2025-11-26 07:06:31,304 | INFO     | --------------------------------------------------
[2025-11-26 02:07:04] 2025-11-26 07:06:31,304 | INFO     | 
[2025-11-26 02:07:04] 2025-11-26 07:06:31,304 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 02:07:04] 2025-11-26 07:06:31,324 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,324 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,325 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,326 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,326 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,328 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:07:04] 2025-11-26 07:06:31,328 | INFO     | job 6895882692 has completed (purged errors)
[2025-11-26 02:07:04] 2025-11-26 07:06:31,328 | INFO     | overall cleanup function is called
[2025-11-26 02:07:04] 2025-11-26 07:06:32,347 | INFO     | --- collectZombieJob: --- 10, [1364565]
[2025-11-26 02:07:04] 2025-11-26 07:06:32,347 | INFO     | zombie collector waiting for pid 1364565
[2025-11-26 02:07:04] 2025-11-26 07:06:32,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:07:04] 2025-11-26 07:06:32,347 | INFO     | collected zombie processes
[2025-11-26 02:07:04] 2025-11-26 07:06:32,348 | INFO     | will attempt to kill all subprocesses of pid=1364565
[2025-11-26 02:07:04] 2025-11-26 07:06:32,656 | INFO     | process IDs to be killed: [1364565] (in reverse order)
[2025-11-26 02:07:04] 2025-11-26 07:06:32,757 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:07:04] 2025-11-26 07:06:32,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:07:04] 2025-11-26 07:06:32,775 | INFO     | did not find any defunct processes belonging to 1364565
[2025-11-26 02:07:04] 2025-11-26 07:06:32,790 | INFO     | did not find any defunct processes belonging to 1364565
[2025-11-26 02:07:04] 2025-11-26 07:06:32,792 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:07:04] 2025-11-26 07:06:32,792 | INFO     | ready for new job
[2025-11-26 02:07:04] 2025-11-26 07:06:32,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:07:04] 2025-11-26 07:06:32,797 | INFO     | ***************************************
[2025-11-26 02:07:04] 2025-11-26 07:06:32,797 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:07:04] 2025-11-26 07:06:32,798 | INFO     | ***************************************
[2025-11-26 02:07:04] 2025-11-26 07:06:32,798 | INFO     | 
[2025-11-26 02:07:04] 2025-11-26 07:06:32,812 | INFO     | architecture information:
[2025-11-26 02:07:04] 2025-11-26 07:06:32,812 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:07:04] 2025-11-26 07:06:32,827 | INFO     | cat /etc/os-release:
[2025-11-26 02:07:04] NAME="CentOS Linux"
[2025-11-26 02:07:04] VERSION="7 (Core)"
[2025-11-26 02:07:04] ID="centos"
[2025-11-26 02:07:04] ID_LIKE="rhel fedora"
[2025-11-26 02:07:04] VERSION_ID="7"
[2025-11-26 02:07:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:07:04] ANSI_COLOR="0;31"
[2025-11-26 02:07:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:07:04] HOME_URL="https://www.centos.org/"
[2025-11-26 02:07:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:07:04] 
[2025-11-26 02:07:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:07:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:07:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:07:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:07:04] 
[2025-11-26 02:07:04] 2025-11-26 07:06:32,827 | INFO     | ***************************************
[2025-11-26 02:07:04] 2025-11-26 07:06:33,330 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 02:07:04] 2025-11-26 07:06:33,344 | INFO     | sufficient remaining disk space (99147055104 B)
[2025-11-26 02:07:04] 2025-11-26 07:06:33,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:07:04] 2025-11-26 07:06:33,345 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:07:04] 2025-11-26 07:06:33,345 | INFO     | update_server=False
[2025-11-26 02:07:04] 2025-11-26 07:06:33,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:07:04] 2025-11-26 07:06:33,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:07:04] 2025-11-26 07:06:33,346 | INFO     | aborting loop
[2025-11-26 02:07:04] 2025-11-26 07:06:33,792 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:07:04] 2025-11-26 07:06:33,823 | INFO     | all data control threads have been joined
[2025-11-26 02:07:04] 2025-11-26 07:06:34,350 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:34,351 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:34,541 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:07:04] 2025-11-26 07:06:34,555 | INFO     | all payload control threads have been joined
[2025-11-26 02:07:04] 2025-11-26 07:06:34,631 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:34,632 | INFO     | [job] validate thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:34,686 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:34,828 | INFO     | [data] control thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:34,941 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:35,018 | INFO     | all job control threads have been joined
[2025-11-26 02:07:04] 2025-11-26 07:06:35,547 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:35,560 | INFO     | [payload] control thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:35,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:07:04] 2025-11-26 07:06:35,688 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:35,793 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:35,795 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:36,023 | INFO     | [job] control thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:36,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:07:04] 2025-11-26 07:06:36,546 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:37,316 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:39,604 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:07:04] 2025-11-26 07:06:40,643 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140633386641216)>', '<ExcThread(monitor, started 140632731416320)>']
[2025-11-26 02:07:04] 2025-11-26 07:06:45,668 | INFO     | all workflow threads have been joined
[2025-11-26 02:07:04] 2025-11-26 07:06:45,668 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:07:04] 2025-11-26 07:06:45,668 | INFO     | traces error code: 0
[2025-11-26 02:07:04] 2025-11-26 07:06:45,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:07:04] 2025-11-26 07:07:04,113 | INFO     | PID=1348848 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:07:04] 2025-11-26 07:07:04,113 | INFO     | .. there are 5 such processes running
[2025-11-26 02:07:04] 2025-11-26 07:07:04,114 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:07:04] 2025-11-26 07:07:04,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:07:04] 2025-11-26 07:07:04,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:07:04] 2025-11-26 07:07:04,114 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:07:04] 2025-11-26 07:07:04,114 | INFO     | [monitor] control thread has ended
[2025-11-26 02:07:04] 2025-11-26 07:07:04,248 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:07:04] 2025-11-26 07:07:04,251 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:07:04] 2025-11-26 07:07:04,254 [wrapper] pilotpid: 1348848
[2025-11-26 02:07:04] 2025-11-26 07:07:04,257 [wrapper] Pilot exit status: 0
[2025-11-26 02:07:04] 2025-11-26 07:07:04,266 [wrapper] pandaids: 6895882692
[2025-11-26 02:07:04] 2025-11-26 07:07:04,333 [wrapper] cleanup supervisor_pilot 1910254 1348849
[2025-11-26 02:07:04] 2025-11-26 07:07:04,335 [wrapper] Test setup, not cleaning
[2025-11-26 02:07:04] 2025-11-26 07:07:04,337 [wrapper] apfmon messages muted
[2025-11-26 02:07:04] 2025-11-26 07:07:04,340 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:07:04] 2025-11-26 07:07:04,342 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:07:04]  *** Error codes and diagnostics ***
[2025-11-26 02:07:04]     "exeErrorCode": 0,
[2025-11-26 02:07:04]     "exeErrorDiag": "",
[2025-11-26 02:07:04]     "pilotErrorCode": 0,
[2025-11-26 02:07:04]     "pilotErrorDiag": "",
[2025-11-26 02:07:04]  *** Listing of results directory ***
[2025-11-26 02:07:04] total 1323812
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 11:37 queuedata.json
[2025-11-26 02:07:04] -rwx------ 1 boincer umatlas     36292 Nov 24 11:40 runpilot2-wrapper.sh
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas       100 Nov 25 09:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:07:04] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 09:10 run_atlas
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas       105 Nov 25 09:10 job.xml
[2025-11-26 02:07:04] -rw-r--r-- 2 boincer umatlas 411749681 Nov 25 09:10 EVNT.47483658._001387.pool.root.1
[2025-11-26 02:07:04] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 09:10 start_atlas.sh
[2025-11-26 02:07:04] drwxrwx--x 2 boincer umatlas      4096 Nov 25 09:10 shared
[2025-11-26 02:07:04] -rw-r--r-- 2 boincer umatlas    590109 Nov 25 09:10 input.tar.gz
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas         0 Nov 25 09:10 boinc_lockfile
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 09:10 pandaJob.out
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas        57 Nov 25 09:10 setup.sh.local
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas    991909 Nov 25 09:10 agis_schedconf.cvmfs.json
[2025-11-26 02:07:04] drwx------ 5 boincer umatlas      4096 Nov 25 09:10 pilot3
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas       533 Nov 26 01:54 boinc_task_state.xml
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas      6014 Nov 26 02:02 init_data.xml
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas 918511015 Nov 26 02:05 HITS.47556149._003738.pool.root.1
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas        95 Nov 26 02:06 pilot_heartbeat.json
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas      1065 Nov 26 02:06 memory_monitor_summary.json
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas   1516240 Nov 26 02:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas   2210229 Nov 26 02:06 log.47556149._003738.job.log.tgz.1
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas      8656 Nov 26 02:06 heartbeat.json
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 02:06 boinc_mmap_file
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas        29 Nov 26 02:06 wrapper_checkpoint.txt
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas       822 Nov 26 02:07 pilotlog.txt
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas   8493067 Nov 26 02:07 log.47556149._003738.job.log.1
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas       353 Nov 26 02:07 output.list
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas       620 Nov 26 02:07 runtime_log
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas  10721280 Nov 26 02:07 result.tar.gz
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas      9338 Nov 26 02:07 runtime_log.err
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas       664 Nov 26 02:07 E1NODm5moh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9lLKDmV5aAbn.diag
[2025-11-26 02:07:04] -rw-r--r-- 1 boincer umatlas     21828 Nov 26 02:07 stderr.txt
[2025-11-26 02:07:04] HITS file was successfully produced:
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas 918511015 Nov 26 02:05 shared/HITS.pool.root.1
[2025-11-26 02:07:04]  *** Contents of shared directory: ***
[2025-11-26 02:07:04] total 1310160
[2025-11-26 02:07:04] -rw-r--r-- 2 boincer umatlas 411749681 Nov 25 09:10 ATLAS.root_0
[2025-11-26 02:07:04] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 09:10 start_atlas.sh
[2025-11-26 02:07:04] -rw-r--r-- 2 boincer umatlas    590109 Nov 25 09:10 input.tar.gz
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas 918511015 Nov 26 02:05 HITS.pool.root.1
[2025-11-26 02:07:04] -rw------- 1 boincer umatlas  10721280 Nov 26 02:07 result.tar.gz
02:07:05 (1342037): run_atlas exited; CPU time 471237.709713
02:07:05 (1342037): called boinc_finish(0)

</stderr_txt>
]]>

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