Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:47:01 (27154): wrapper (7.7.26015): starting
06:47:01 (27154): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 06:47:01] Arguments: --nthreads 8
[2025-11-28 06:47:01] Threads: 8
[2025-11-28 06:47:01] Checking for CVMFS
[2025-11-28 06:47:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 06:47:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 06:47:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 06:47:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 06:47:03] 2.11.2.0 18053 174654 138744 153399 3 85 21803168 25165824 1344 130560 11 57831831 99.909 26387964 2239 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 06:47:03] CVMFS is ok
[2025-11-28 06:47:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 06:47:03] Checking for apptainer binary...
[2025-11-28 06:47:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 06:47:03] Running /usr/bin/apptainer --version
[2025-11-28 06:47:04] apptainer version 1.3.2-1.el7
[2025-11-28 06:47:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 06:47:07] cg-vwn306.simple-grid.lan
[2025-11-28 06:47:07] apptainer works
[2025-11-28 06:47:07] Set ATHENA_PROC_NUMBER=8
[2025-11-28 06:47:07] Set ATHENA_CORE_NUMBER=8
[2025-11-28 06:47:07] Starting ATLAS job with PandaID=6895882321
[2025-11-28 06:47:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 06:20:35]  *** The last 200 lines of the pilot log: ***
[2025-11-29 06:20:35] 2025-11-29 05:19:13,737 | INFO     | time since job start (84497s) is within the limit (172800.0s)
[2025-11-29 06:20:35] 2025-11-29 05:19:15,389 | INFO     | monitor loop #5711: job 0:6895882321 is in state 'finished'
[2025-11-29 06:20:35] 2025-11-29 05:19:15,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:20:35] 2025-11-29 05:19:15,744 | INFO     | time since job start (84499s) is within the limit (172800.0s)
[2025-11-29 06:20:35] 2025-11-29 05:19:17,750 | INFO     | time since job start (84501s) is within the limit (172800.0s)
[2025-11-29 06:20:35] 2025-11-29 05:19:17,894 | INFO     | monitor loop #5712: job 0:6895882321 is in state 'finished'
[2025-11-29 06:20:35] 2025-11-29 05:19:17,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:20:35] 2025-11-29 05:19:18,989 | INFO     | PID=31263 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 06:20:35] 2025-11-29 05:19:18,992 | INFO     | .. there are 9 such processes running
[2025-11-29 06:20:35] 2025-11-29 05:19:19,993 | INFO     | time since job start (84503s) is within the limit (172800.0s)
[2025-11-29 06:20:35] 2025-11-29 05:19:20,408 | INFO     | monitor loop #5713: job 0:6895882321 is in state 'finished'
[2025-11-29 06:20:35] 2025-11-29 05:19:20,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:20:35] 2025-11-29 05:19:22,002 | INFO     | time since job start (84506s) is within the limit (172800.0s)
[2025-11-29 06:20:35] 2025-11-29 05:19:22,912 | INFO     | monitor loop #5714: job 0:6895882321 is in state 'finished'
[2025-11-29 06:20:35] 2025-11-29 05:19:22,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:20:35] 2025-11-29 05:19:24,009 | INFO     | time since job start (84508s) is within the limit (172800.0s)
[2025-11-29 06:20:35] 2025-11-29 05:19:24,060 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 06:20:35] 2025-11-29 05:19:24,061 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-29 06:20:35] 2025-11-29 05:19:24,063 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895882321/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 06:20:35] 2025-11-29 05:19:24,064 | INFO     | extracted standard info from prmon json
[2025-11-29 06:20:35] 2025-11-29 05:19:24,064 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 06:20:35] 2025-11-29 05:19:24,064 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 06:20:35] 2025-11-29 05:19:24,104 | INFO     | fitting pss+swap vs Time
[2025-11-29 06:20:35] 2025-11-29 05:19:24,107 | INFO     | sum of square deviations: 807857381488.9738
[2025-11-29 06:20:35] 2025-11-29 05:19:24,161 | INFO     | sum of deviations: 3083594975027.767
[2025-11-29 06:20:35] 2025-11-29 05:19:24,162 | INFO     | mean x: 1764351511.6293604
[2025-11-29 06:20:35] 2025-11-29 05:19:24,162 | INFO     | mean y: 2833817.2681686045
[2025-11-29 06:20:35] 2025-11-29 05:19:24,162 | INFO     | intersect: -6731703218.731171
[2025-11-29 06:20:35] 2025-11-29 05:19:24,164 | INFO     | chi2: 21.153301559623813
[2025-11-29 06:20:35] 2025-11-29 05:19:24,166 | INFO     | sum of square deviations: 799083253722.5743
[2025-11-29 06:20:35] 2025-11-29 05:19:24,226 | INFO     | sum of deviations: 3548882125905.898
[2025-11-29 06:20:35] 2025-11-29 05:19:24,227 | INFO     | mean x: 1764351359.133479
[2025-11-29 06:20:35] 2025-11-29 05:19:24,227 | INFO     | mean y: 2841903.1590080233
[2025-11-29 06:20:35] 2025-11-29 05:19:24,227 | INFO     | intersect: -7832981176.698001
[2025-11-29 06:20:35] 2025-11-29 05:19:24,229 | INFO     | chi2: 17.80215507656494
[2025-11-29 06:20:35] 2025-11-29 05:19:24,229 | INFO     | current chi2=17.80215507656494 (change=15.842191223025656 %)
[2025-11-29 06:20:35] 2025-11-29 05:19:24,229 | INFO     | right removable region: 1370
[2025-11-29 06:20:35] 2025-11-29 05:19:24,247 | INFO     | sum of square deviations: 799082305782.5751
[2025-11-29 06:20:35] 2025-11-29 05:19:24,333 | INFO     | sum of deviations: 2504484715943.764
[2025-11-29 06:20:35] 2025-11-29 05:19:24,334 | INFO     | mean x: 1764351664.133479
[2025-11-29 06:20:35] 2025-11-29 05:19:24,334 | INFO     | mean y: 2843881.2144420133
[2025-11-29 06:20:35] 2025-11-29 05:19:24,334 | INFO     | intersect: -5526989209.0637045
[2025-11-29 06:20:35] 2025-11-29 05:19:24,336 | INFO     | chi2: 16.41375655096075
[2025-11-29 06:20:35] 2025-11-29 05:19:24,336 | INFO     | current chi2=16.41375655096075 (change=22.40569868161683 %)
[2025-11-29 06:20:35] 2025-11-29 05:19:24,336 | INFO     | left removable region: 10
[2025-11-29 06:20:35] 2025-11-29 05:19:24,338 | INFO     | sum of square deviations: 780002414912.3267
[2025-11-29 06:20:35] 2025-11-29 05:19:24,406 | INFO     | sum of deviations: 2595221368223.3486
[2025-11-29 06:20:35] 2025-11-29 05:19:24,407 | INFO     | mean x: 1764351633.642647
[2025-11-29 06:20:35] 2025-11-29 05:19:24,407 | INFO     | mean y: 2862210.7352941176
[2025-11-29 06:20:35] 2025-11-29 05:19:24,407 | INFO     | intersect: -5867482512.753598
[2025-11-29 06:20:35] 2025-11-29 05:19:24,409 | INFO     | chi2: 9.139295319506576
[2025-11-29 06:20:35] 2025-11-29 05:19:24,409 | INFO     | current memory leak: 3.33 B/s (using 1360 data points, chi2=9.14)
[2025-11-29 06:20:35] 2025-11-29 05:19:24,410 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | ..............................
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | . Timing measurements:
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | . get job = 0 s
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | . initial setup = 10 s
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | . payload setup = 158 s
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | . stage-in = 0 s
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | . payload execution = 84056 s
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | . stage-out = 4 s
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | . log creation = 2 s
[2025-11-29 06:20:35] 2025-11-29 05:19:24,411 | INFO     | ..............................
[2025-11-29 06:20:35] 2025-11-29 05:19:24,517 | INFO     | 
[2025-11-29 06:20:35] 2025-11-29 05:19:24,517 | INFO     | job summary report
[2025-11-29 06:20:35] 2025-11-29 05:19:24,517 | INFO     | --------------------------------------------------
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | PanDA job id: 6895882321
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | task id: 47556161
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | errors: (none)
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | pilot state: finished 
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | transexitcode: 0
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | exeerrorcode: 0
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | exeerrordiag: 
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | exitcode: 0
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | exitmsg: OK
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | cpuconsumptiontime: 314111 s
[2025-11-29 06:20:35] 2025-11-29 05:19:24,518 | INFO     | nevents: 1000
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | neventsw: 0
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | pid: 5403
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | pgrp: 5403
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | corecount: 8
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | event service: False
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | sizes: {0: 2284086, 1: 2284341, 2: 2284341, 12: 2284369, 23: 2284397, 34: 2284425, 44: 2284581, 55: 2284609, 66: 2284637, 77: 2284665, 87: 2284721, 93: 2285291, 98
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | --------------------------------------------------
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | 
[2025-11-29 06:20:35] 2025-11-29 05:19:24,519 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-29 06:20:35] 2025-11-29 05:19:25,172 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,173 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,173 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,173 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 06:20:35] 2025-11-29 05:19:25,175 | INFO     | job 6895882321 has completed (purged errors)
[2025-11-29 06:20:35] 2025-11-29 05:19:25,175 | INFO     | overall cleanup function is called
[2025-11-29 06:20:35] 2025-11-29 05:19:26,197 | INFO     | --- collectZombieJob: --- 10, [5403]
[2025-11-29 06:20:35] 2025-11-29 05:19:26,197 | INFO     | zombie collector waiting for pid 5403
[2025-11-29 06:20:35] 2025-11-29 05:19:26,197 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 06:20:35] 2025-11-29 05:19:26,198 | INFO     | collected zombie processes
[2025-11-29 06:20:35] 2025-11-29 05:19:26,198 | INFO     | will attempt to kill all subprocesses of pid=5403
[2025-11-29 06:20:35] 2025-11-29 05:19:26,325 | INFO     | process IDs to be killed: [5403] (in reverse order)
[2025-11-29 06:20:35] 2025-11-29 05:19:26,904 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 06:20:35] 2025-11-29 05:19:26,904 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 06:20:35] 2025-11-29 05:19:26,907 | INFO     | did not find any defunct processes belonging to 5403
[2025-11-29 06:20:35] 2025-11-29 05:19:26,910 | INFO     | did not find any defunct processes belonging to 5403
[2025-11-29 06:20:35] 2025-11-29 05:19:26,978 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 06:20:35] 2025-11-29 05:19:26,978 | INFO     | ready for new job
[2025-11-29 06:20:35] 2025-11-29 05:19:26,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 06:20:35] 2025-11-29 05:19:26,983 | INFO     | ***************************************
[2025-11-29 06:20:35] 2025-11-29 05:19:26,983 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 06:20:35] 2025-11-29 05:19:26,983 | INFO     | ***************************************
[2025-11-29 06:20:35] 2025-11-29 05:19:26,983 | INFO     | 
[2025-11-29 06:20:35] 2025-11-29 05:19:26,984 | INFO     | pilot is running in a VM
[2025-11-29 06:20:35] 2025-11-29 05:19:26,984 | INFO     | architecture information:
[2025-11-29 06:20:35] 2025-11-29 05:19:26,993 | INFO     | executing command: cat /etc/os-release
[2025-11-29 06:20:35] 2025-11-29 05:19:27,256 | INFO     | cat /etc/os-release:
[2025-11-29 06:20:35] NAME="CentOS Linux"
[2025-11-29 06:20:35] VERSION="7 (Core)"
[2025-11-29 06:20:35] ID="centos"
[2025-11-29 06:20:35] ID_LIKE="rhel fedora"
[2025-11-29 06:20:35] VERSION_ID="7"
[2025-11-29 06:20:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 06:20:35] ANSI_COLOR="0;31"
[2025-11-29 06:20:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 06:20:35] HOME_URL="https://www.centos.org/"
[2025-11-29 06:20:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 06:20:35] 
[2025-11-29 06:20:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 06:20:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 06:20:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 06:20:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 06:20:35] 
[2025-11-29 06:20:35] 2025-11-29 05:19:27,256 | INFO     | ***************************************
[2025-11-29 06:20:35] 2025-11-29 05:19:27,759 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-29 06:20:35] 2025-11-29 05:19:27,987 | INFO     | sufficient remaining disk space (488856616960 B)
[2025-11-29 06:20:35] 2025-11-29 05:19:27,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 06:20:35] 2025-11-29 05:19:27,987 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 06:20:35] 2025-11-29 05:19:27,987 | INFO     | update_server=False
[2025-11-29 06:20:35] 2025-11-29 05:19:27,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 06:20:35] 2025-11-29 05:19:28,050 | INFO     | all data control threads have been joined
[2025-11-29 06:20:35] 2025-11-29 05:19:28,851 | INFO     | all job control threads have been joined
[2025-11-29 06:20:35] 2025-11-29 05:19:28,936 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 06:20:35] 2025-11-29 05:19:28,936 | INFO     | aborting loop
[2025-11-29 06:20:35] 2025-11-29 05:19:28,993 | INFO     | [job] retrieve thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:29,056 | INFO     | [data] control thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:29,070 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:29,092 | INFO     | [payload] failed_post thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:29,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 06:20:35] 2025-11-29 05:19:29,369 | INFO     | all payload control threads have been joined
[2025-11-29 06:20:35] 2025-11-29 05:19:29,386 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:29,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 06:20:35] 2025-11-29 05:19:29,654 | INFO     | [data] copytool_in thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:29,744 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:29,857 | INFO     | [job] control thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:29,942 | INFO     | [job] job monitor thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:30,006 | INFO     | [job] validate thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:30,231 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:30,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 06:20:35] 2025-11-29 05:19:30,375 | INFO     | [payload] control thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:30,538 | INFO     | [job] queue monitor thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:30,580 | INFO     | [payload] validate_post thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:31,277 | INFO     | [data] copytool_out thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:34,261 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 06:20:35] 2025-11-29 05:19:57,211 | INFO     | PID=31263 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 06:20:35] 2025-11-29 05:19:57,211 | INFO     | .. there are 9 such processes running
[2025-11-29 06:20:35] 2025-11-29 05:19:57,212 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 06:20:35] 2025-11-29 05:19:57,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 06:20:35] 2025-11-29 05:19:57,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 06:20:35] 2025-11-29 05:20:23,883 | INFO     | [monitor] cgroup control has ended
[2025-11-29 06:20:35] 2025-11-29 05:20:25,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139884289120064)>', '<ExcThread(monitor, started 139883720992512)>']
[2025-11-29 06:20:35] 2025-11-29 05:20:26,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 06:20:35] 2025-11-29 05:20:26,383 | INFO     | [monitor] control thread has ended
[2025-11-29 06:20:35] 2025-11-29 05:20:30,579 | INFO     | all workflow threads have been joined
[2025-11-29 06:20:35] 2025-11-29 05:20:30,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 06:20:35] 2025-11-29 05:20:30,580 | INFO     | traces error code: 0
[2025-11-29 06:20:35] 2025-11-29 05:20:30,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 06:20:35] 2025-11-29 05:20:30,910 [wrapper] ==== pilot stdout END ====
[2025-11-29 06:20:35] 2025-11-29 05:20:30,987 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 06:20:35] 2025-11-29 05:20:31,058 [wrapper] pilotpid: 31263
[2025-11-29 06:20:35] 2025-11-29 05:20:31,134 [wrapper] Pilot exit status: 0
[2025-11-29 06:20:35] 2025-11-29 05:20:31,421 [wrapper] pandaids: 6895882321
[2025-11-29 06:20:35] 2025-11-29 05:20:32,296 [wrapper] cleanup supervisor_pilot  3524 31264
[2025-11-29 06:20:35] 2025-11-29 05:20:32,385 [wrapper] Test setup, not cleaning
[2025-11-29 06:20:35] 2025-11-29 05:20:32,511 [wrapper] apfmon messages muted
[2025-11-29 06:20:35] 2025-11-29 05:20:32,620 [wrapper] ==== wrapper stdout END ====
[2025-11-29 06:20:35] 2025-11-29 05:20:32,735 [wrapper] ==== wrapper stderr END ====
[2025-11-29 06:20:35]  *** Error codes and diagnostics ***
[2025-11-29 06:20:35]     "exeErrorCode": 0,
[2025-11-29 06:20:35]     "exeErrorDiag": "",
[2025-11-29 06:20:35]     "pilotErrorCode": 0,
[2025-11-29 06:20:35]     "pilotErrorDiag": "",
[2025-11-29 06:20:35]  *** Listing of results directory ***
[2025-11-29 06:20:35] total 1325492
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc    576529 Nov 24 17:06 pilot3.tar.gz
[2025-11-29 06:20:35] -rwx------. 1 boinc boinc     36292 Nov 24 17:33 runpilot2-wrapper.sh
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc      5112 Nov 24 17:33 queuedata.json
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc       100 Nov 28 06:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 06:20:35] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 06:47 run_atlas
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc       105 Nov 28 06:47 job.xml
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc      6391 Nov 28 06:47 init_data.xml
[2025-11-29 06:20:35] -rw-r--r--. 2 boinc boinc 411195247 Nov 28 06:47 EVNT.47483658._002053.pool.root.1
[2025-11-29 06:20:35] -rw-r--r--. 2 boinc boinc     15847 Nov 28 06:47 start_atlas.sh
[2025-11-29 06:20:35] drwxrwx--x. 2 boinc boinc        68 Nov 28 06:47 shared
[2025-11-29 06:20:35] -rw-r--r--. 2 boinc boinc    590097 Nov 28 06:47 input.tar.gz
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc         0 Nov 28 06:47 boinc_lockfile
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc      2785 Nov 28 06:47 pandaJob.out
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc    991858 Nov 28 06:50 agis_schedconf.cvmfs.json
[2025-11-29 06:20:35] drwx------. 5 boinc boinc      4096 Nov 28 06:50 pilot3
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc       533 Nov 29 05:55 boinc_task_state.xml
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc 914692711 Nov 29 06:16 HITS.47556161._000364.pool.root.1
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc      1033 Nov 29 06:17 memory_monitor_summary.json
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc   1516240 Nov 29 06:17 agis_ddmendpoints.agis.ALL.json
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc   2467934 Nov 29 06:17 log.47556161._000364.job.log.tgz.1
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc      8626 Nov 29 06:19 heartbeat.json
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc        95 Nov 29 06:19 pilot_heartbeat.json
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc        29 Nov 29 06:20 wrapper_checkpoint.txt
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc      8192 Nov 29 06:20 boinc_mmap_file
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc      4884 Nov 29 06:20 pilotlog.txt
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc  11284981 Nov 29 06:20 log.47556161._000364.job.log.1
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc       353 Nov 29 06:20 output.list
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc       620 Nov 29 06:20 runtime_log
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc  13772800 Nov 29 06:20 result.tar.gz
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc       662 Nov 29 06:20 VhNNDmFgoh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYlLKDmWOAHjm.diag
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc      8817 Nov 29 06:20 runtime_log.err
[2025-11-29 06:20:35] -rw-r--r--. 1 boinc boinc     21502 Nov 29 06:20 stderr.txt
[2025-11-29 06:20:35] HITS file was successfully produced:
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc 914692711 Nov 29 06:16 shared/HITS.pool.root.1
[2025-11-29 06:20:35]  *** Contents of shared directory: ***
[2025-11-29 06:20:35] total 1308864
[2025-11-29 06:20:35] -rw-r--r--. 2 boinc boinc 411195247 Nov 28 06:47 ATLAS.root_0
[2025-11-29 06:20:35] -rw-r--r--. 2 boinc boinc     15847 Nov 28 06:47 start_atlas.sh
[2025-11-29 06:20:35] -rw-r--r--. 2 boinc boinc    590097 Nov 28 06:47 input.tar.gz
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc 914692711 Nov 29 06:16 HITS.pool.root.1
[2025-11-29 06:20:35] -rw-------. 1 boinc boinc  13772800 Nov 29 06:20 result.tar.gz
06:20:36 (27154): run_atlas exited; CPU time 314687.548395
06:20:36 (27154): called boinc_finish(0)

</stderr_txt>
]]>

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