Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:53:17 (15850): wrapper (7.7.26015): starting
09:53:17 (15850): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 09:53:17] Arguments: --nthreads 12
[2025-11-25 09:53:17] Threads: 12
[2025-11-25 09:53:17] Checking for CVMFS
[2025-11-25 09:53:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:53:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:53:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:53:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:53:17] 2.11.2.0 6893 116300 89344 153285 2 81 20084051 20275200 1 130560 0 49786197 99.933 5971212 31132 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 09:53:17] CVMFS is ok
[2025-11-25 09:53:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 09:53:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 09:53:17] Further information can be found at the LHC@home message board.
[2025-11-25 09:53:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:53:17] Checking for apptainer binary...
[2025-11-25 09:53:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:53:17] Running /usr/bin/apptainer --version
[2025-11-25 09:53:18] apptainer version 1.3.2-1.el7
[2025-11-25 09:53:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:53:19] c-205-3.aglt2.org
[2025-11-25 09:53:19] apptainer works
[2025-11-25 09:53:19] Set ATHENA_PROC_NUMBER=12
[2025-11-25 09:53:19] Set ATHENA_CORE_NUMBER=12
[2025-11-25 09:53:19] Starting ATLAS job with PandaID=6895383399
[2025-11-25 09:53:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:12:24]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:12:24] 2025-11-25 22:11:43,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,165 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 17:12:24] 2025-11-25 22:11:43,169 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-25 17:12:24] 2025-11-25 22:11:43,171 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895383399/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,172 | INFO     | extracted standard info from prmon json
[2025-11-25 17:12:24] 2025-11-25 22:11:43,172 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:12:24] 2025-11-25 22:11:43,173 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:12:24] 2025-11-25 22:11:43,180 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:12:24] 2025-11-25 22:11:43,180 | INFO     | sum of square deviations: 24826147299.930412
[2025-11-25 17:12:24] 2025-11-25 22:11:43,184 | INFO     | sum of deviations: 390962816646.75214
[2025-11-25 17:12:24] 2025-11-25 22:11:43,184 | INFO     | mean x: 1764095559.2459397
[2025-11-25 17:12:24] 2025-11-25 22:11:43,184 | INFO     | mean y: 3427342.143851508
[2025-11-25 17:12:24] 2025-11-25 22:11:43,185 | INFO     | intersect: -27777595639.168808
[2025-11-25 17:12:24] 2025-11-25 22:11:43,185 | INFO     | chi2: 6.02160730680929
[2025-11-25 17:12:24] 2025-11-25 22:11:43,186 | INFO     | sum of square deviations: 23972145012.12439
[2025-11-25 17:12:24] 2025-11-25 22:11:43,189 | INFO     | sum of deviations: 559885514352.8651
[2025-11-25 17:12:24] 2025-11-25 22:11:43,190 | INFO     | mean x: 1764095406.7488263
[2025-11-25 17:12:24] 2025-11-25 22:11:43,190 | INFO     | mean y: 3457473.232394366
[2025-11-25 17:12:24] 2025-11-25 22:11:43,190 | INFO     | intersect: -41198173155.79762
[2025-11-25 17:12:24] 2025-11-25 22:11:43,190 | INFO     | chi2: 2.8457282812502585
[2025-11-25 17:12:24] 2025-11-25 22:11:43,190 | INFO     | current chi2=2.8457282812502585 (change=52.741383882135885 %)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,191 | INFO     | sum of square deviations: 23137957049.311287
[2025-11-25 17:12:24] 2025-11-25 22:11:43,195 | INFO     | sum of deviations: 611295124920.0472
[2025-11-25 17:12:24] 2025-11-25 22:11:43,195 | INFO     | mean x: 1764095254.2517815
[2025-11-25 17:12:24] 2025-11-25 22:11:43,196 | INFO     | mean y: 3466826.603325416
[2025-11-25 17:12:24] 2025-11-25 22:11:43,196 | INFO     | intersect: -46603190214.053764
[2025-11-25 17:12:24] 2025-11-25 22:11:43,196 | INFO     | chi2: 2.2851145907184045
[2025-11-25 17:12:24] 2025-11-25 22:11:43,196 | INFO     | current chi2=2.2851145907184045 (change=19.70018340210439 %)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,197 | INFO     | right removable region: 420
[2025-11-25 17:12:24] 2025-11-25 22:11:43,197 | INFO     | sum of square deviations: 23972080352.124382
[2025-11-25 17:12:24] 2025-11-25 22:11:43,202 | INFO     | sum of deviations: 260457140616.99072
[2025-11-25 17:12:24] 2025-11-25 22:11:43,202 | INFO     | mean x: 1764095711.7488263
[2025-11-25 17:12:24] 2025-11-25 22:11:43,202 | INFO     | mean y: 3450562.9812206575
[2025-11-25 17:12:24] 2025-11-25 22:11:43,202 | INFO     | intersect: -19163485226.80627
[2025-11-25 17:12:24] 2025-11-25 22:11:43,202 | INFO     | chi2: 3.94111874474208
[2025-11-25 17:12:24] 2025-11-25 22:11:43,203 | INFO     | current chi2=3.94111874474208 (change=34.55038590302251 %)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,203 | INFO     | sum of square deviations: 23137853470.812294
[2025-11-25 17:12:24] 2025-11-25 22:11:43,207 | INFO     | sum of deviations: 226267481053.32538
[2025-11-25 17:12:24] 2025-11-25 22:11:43,208 | INFO     | mean x: 1764095864.249406
[2025-11-25 17:12:24] 2025-11-25 22:11:43,208 | INFO     | mean y: 3456807.3016627077
[2025-11-25 17:12:24] 2025-11-25 22:11:43,208 | INFO     | intersect: -17247820544.06662
[2025-11-25 17:12:24] 2025-11-25 22:11:43,208 | INFO     | chi2: 3.8869426054858494
[2025-11-25 17:12:24] 2025-11-25 22:11:43,208 | INFO     | current chi2=3.8869426054858494 (change=1.3746385928743696 %)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,209 | INFO     | left removable region: 20
[2025-11-25 17:12:24] 2025-11-25 22:11:43,209 | INFO     | sum of square deviations: 19845284283.98983
[2025-11-25 17:12:24] 2025-11-25 22:11:43,212 | INFO     | sum of deviations: 385179859298.44995
[2025-11-25 17:12:24] 2025-11-25 22:11:43,213 | INFO     | mean x: 1764095833.755
[2025-11-25 17:12:24] 2025-11-25 22:11:43,213 | INFO     | mean y: 3509033.025
[2025-11-25 17:12:24] 2025-11-25 22:11:43,213 | INFO     | intersect: -34236070270.100132
[2025-11-25 17:12:24] 2025-11-25 22:11:43,213 | INFO     | chi2: 0.06702379092520237
[2025-11-25 17:12:24] 2025-11-25 22:11:43,213 | INFO     | current memory leak: 19.41 B/s (using 400 data points, chi2=0.07)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,214 | INFO     | could have reported an average CPU frequency of 2395 MHz (18 samples)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,214 | INFO     | ..............................
[2025-11-25 17:12:24] 2025-11-25 22:11:43,214 | INFO     | . Timing measurements:
[2025-11-25 17:12:24] 2025-11-25 22:11:43,214 | INFO     | . get job = 0 s
[2025-11-25 17:12:24] 2025-11-25 22:11:43,214 | INFO     | . initial setup = 2 s
[2025-11-25 17:12:24] 2025-11-25 22:11:43,214 | INFO     | . payload setup = 7 s
[2025-11-25 17:12:24] 2025-11-25 22:11:43,214 | INFO     | . stage-in = 0 s
[2025-11-25 17:12:24] 2025-11-25 22:11:43,214 | INFO     | . payload execution = 26245 s
[2025-11-25 17:12:24] 2025-11-25 22:11:43,215 | INFO     | . stage-out = 3 s
[2025-11-25 17:12:24] 2025-11-25 22:11:43,215 | INFO     | . log creation = 0 s
[2025-11-25 17:12:24] 2025-11-25 22:11:43,215 | INFO     | ..............................
[2025-11-25 17:12:24] 2025-11-25 22:11:43,596 | INFO     | time since job start (26289s) is within the limit (172800.0s)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,784 | INFO     | 
[2025-11-25 17:12:24] 2025-11-25 22:11:43,784 | INFO     | job summary report
[2025-11-25 17:12:24] 2025-11-25 22:11:43,784 | INFO     | --------------------------------------------------
[2025-11-25 17:12:24] 2025-11-25 22:11:43,784 | INFO     | PanDA job id: 6895383399
[2025-11-25 17:12:24] 2025-11-25 22:11:43,784 | INFO     | task id: 47556137
[2025-11-25 17:12:24] 2025-11-25 22:11:43,786 | INFO     | errors: (none)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,787 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:12:24] 2025-11-25 22:11:43,788 | INFO     | pilot state: finished 
[2025-11-25 17:12:24] 2025-11-25 22:11:43,788 | INFO     | transexitcode: 0
[2025-11-25 17:12:24] 2025-11-25 22:11:43,788 | INFO     | exeerrorcode: 0
[2025-11-25 17:12:24] 2025-11-25 22:11:43,788 | INFO     | exeerrordiag: 
[2025-11-25 17:12:24] 2025-11-25 22:11:43,789 | INFO     | exitcode: 0
[2025-11-25 17:12:24] 2025-11-25 22:11:43,789 | INFO     | exitmsg: OK
[2025-11-25 17:12:24] 2025-11-25 22:11:43,789 | INFO     | cpuconsumptiontime: 301730 s
[2025-11-25 17:12:24] 2025-11-25 22:11:43,789 | INFO     | nevents: 1000
[2025-11-25 17:12:24] 2025-11-25 22:11:43,789 | INFO     | neventsw: 0
[2025-11-25 17:12:24] 2025-11-25 22:11:43,789 | INFO     | pid: 26007
[2025-11-25 17:12:24] 2025-11-25 22:11:43,790 | INFO     | pgrp: 26007
[2025-11-25 17:12:24] 2025-11-25 22:11:43,790 | INFO     | corecount: 12
[2025-11-25 17:12:24] 2025-11-25 22:11:43,790 | INFO     | event service: False
[2025-11-25 17:12:24] 2025-11-25 22:11:43,790 | INFO     | sizes: {0: 2284144, 1: 2284343, 6: 2284605, 11: 2284633, 26256: 2322038, 26257: 2322037, 26262: 2331215, 26264: 2331271, 26272: 2331517}
[2025-11-25 17:12:24] 2025-11-25 22:11:43,790 | INFO     | --------------------------------------------------
[2025-11-25 17:12:24] 2025-11-25 22:11:43,790 | INFO     | 
[2025-11-25 17:12:24] 2025-11-25 22:11:43,791 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 17:12:24] 2025-11-25 22:11:43,816 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,816 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,816 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,817 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,818 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,818 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,818 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,819 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,819 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:12:24] 2025-11-25 22:11:43,820 | INFO     | job 6895383399 has completed (purged errors)
[2025-11-25 17:12:24] 2025-11-25 22:11:43,820 | INFO     | overall cleanup function is called
[2025-11-25 17:12:24] 2025-11-25 22:11:44,836 | INFO     | --- collectZombieJob: --- 10, [26007]
[2025-11-25 17:12:24] 2025-11-25 22:11:44,836 | INFO     | zombie collector waiting for pid 26007
[2025-11-25 17:12:24] 2025-11-25 22:11:44,836 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:12:24] 2025-11-25 22:11:44,836 | INFO     | collected zombie processes
[2025-11-25 17:12:24] 2025-11-25 22:11:44,836 | INFO     | will attempt to kill all subprocesses of pid=26007
[2025-11-25 17:12:24] 2025-11-25 22:11:44,931 | INFO     | process IDs to be killed: [26007] (in reverse order)
[2025-11-25 17:12:24] 2025-11-25 22:11:44,984 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:12:24] 2025-11-25 22:11:44,984 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:12:24] 2025-11-25 22:11:44,988 | INFO     | did not find any defunct processes belonging to 26007
[2025-11-25 17:12:24] 2025-11-25 22:11:44,992 | INFO     | did not find any defunct processes belonging to 26007
[2025-11-25 17:12:24] 2025-11-25 22:11:44,994 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:12:24] 2025-11-25 22:11:44,994 | INFO     | ready for new job
[2025-11-25 17:12:24] 2025-11-25 22:11:44,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:12:24] 2025-11-25 22:11:44,996 | INFO     | ***************************************
[2025-11-25 17:12:24] 2025-11-25 22:11:44,997 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:12:24] 2025-11-25 22:11:44,997 | INFO     | ***************************************
[2025-11-25 17:12:24] 2025-11-25 22:11:44,997 | INFO     | 
[2025-11-25 17:12:24] 2025-11-25 22:11:44,997 | INFO     | architecture information:
[2025-11-25 17:12:24] 2025-11-25 22:11:44,998 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:12:24] 2025-11-25 22:11:45,014 | INFO     | cat /etc/os-release:
[2025-11-25 17:12:24] NAME="CentOS Linux"
[2025-11-25 17:12:24] VERSION="7 (Core)"
[2025-11-25 17:12:24] ID="centos"
[2025-11-25 17:12:24] ID_LIKE="rhel fedora"
[2025-11-25 17:12:24] VERSION_ID="7"
[2025-11-25 17:12:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:12:24] ANSI_COLOR="0;31"
[2025-11-25 17:12:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:12:24] HOME_URL="https://www.centos.org/"
[2025-11-25 17:12:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:12:24] 
[2025-11-25 17:12:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:12:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:12:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:12:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:12:24] 
[2025-11-25 17:12:24] 2025-11-25 22:11:45,014 | INFO     | ***************************************
[2025-11-25 17:12:24] 2025-11-25 22:11:45,517 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 17:12:24] 2025-11-25 22:11:45,535 | INFO     | sufficient remaining disk space (28356640768 B)
[2025-11-25 17:12:24] 2025-11-25 22:11:45,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:12:24] 2025-11-25 22:11:45,536 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:12:24] 2025-11-25 22:11:45,536 | INFO     | update_server=False
[2025-11-25 17:12:24] 2025-11-25 22:11:45,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:12:24] 2025-11-25 22:11:45,536 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 17:12:24] 2025-11-25 22:11:45,537 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:12:24] 2025-11-25 22:11:45,537 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:12:24] 2025-11-25 22:11:45,537 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:12:24] 2025-11-25 22:11:45,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:12:24] 2025-11-25 22:11:45,589 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 17:12:24] 2025-11-25 22:11:45,589 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 17:12:24] 2025-11-25 22:11:45,600 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:12:24] 2025-11-25 22:11:45,600 | INFO     | will abort loop
[2025-11-25 17:12:24] 2025-11-25 22:11:45,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:12:24] 2025-11-25 22:11:45,805 | INFO     | all data control threads have been joined
[2025-11-25 17:12:24] 2025-11-25 22:11:46,206 | INFO     | all payload control threads have been joined
[2025-11-25 17:12:24] 2025-11-25 22:11:46,411 | INFO     | all job control threads have been joined
[2025-11-25 17:12:24] 2025-11-25 22:11:46,540 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:46,605 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:46,633 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:46,693 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:46,808 | INFO     | [data] control thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:47,209 | INFO     | [payload] control thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:47,332 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:47,396 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:47,416 | INFO     | [job] control thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:47,562 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:47,653 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:47,751 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:47,799 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:48,021 | INFO     | [job] validate thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:48,308 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:12:24] 2025-11-25 22:11:49,314 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:11:49,745 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:12:24] 2025-11-25 22:12:17,247 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:12:24] 2025-11-25 22:12:19,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781095257920)>', '<ExcThread(monitor, started 139780281054976)>']
[2025-11-25 17:12:24] 2025-11-25 22:12:19,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:12:24] 2025-11-25 22:12:19,695 | INFO     | [monitor] control thread has ended
[2025-11-25 17:12:24] 2025-11-25 22:12:24,065 | INFO     | all workflow threads have been joined
[2025-11-25 17:12:24] 2025-11-25 22:12:24,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:12:24] 2025-11-25 22:12:24,066 | INFO     | traces error code: 0
[2025-11-25 17:12:24] 2025-11-25 22:12:24,066 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:12:24] 2025-11-25 22:12:24,168 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:12:24] 2025-11-25 22:12:24,172 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:12:24] 2025-11-25 22:12:24,176 [wrapper] pilotpid: 19614
[2025-11-25 17:12:24] 2025-11-25 22:12:24,180 [wrapper] Pilot exit status: 0
[2025-11-25 17:12:24] 2025-11-25 22:12:24,195 [wrapper] pandaids: 6895383399
[2025-11-25 17:12:24] 2025-11-25 22:12:24,242 [wrapper] cleanup supervisor_pilot 14637 19615
[2025-11-25 17:12:24] 2025-11-25 22:12:24,246 [wrapper] Test setup, not cleaning
[2025-11-25 17:12:24] 2025-11-25 22:12:24,251 [wrapper] apfmon messages muted
[2025-11-25 17:12:24] 2025-11-25 22:12:24,255 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:12:24] 2025-11-25 22:12:24,258 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:12:24]  *** Error codes and diagnostics ***
[2025-11-25 17:12:24]     "exeErrorCode": 0,
[2025-11-25 17:12:24]     "exeErrorDiag": "",
[2025-11-25 17:12:24]     "pilotErrorCode": 0,
[2025-11-25 17:12:24]     "pilotErrorDiag": "",
[2025-11-25 17:12:24]  *** Listing of results directory ***
[2025-11-25 17:12:24] total 1324460
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 23:09 pilot3.tar.gz
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 23:22 queuedata.json
[2025-11-25 17:12:24] -rwx------ 1 boincer umatlas     36292 Nov 23 23:25 runpilot2-wrapper.sh
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas       100 Nov 25 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:12:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 09:53 run_atlas
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas       105 Nov 25 09:53 job.xml
[2025-11-25 17:12:24] -rw-r--r-- 2 boincer umatlas 413116084 Nov 25 09:53 EVNT.47483658._001008.pool.root.1
[2025-11-25 17:12:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 09:53 start_atlas.sh
[2025-11-25 17:12:24] drwxrwx--x 2 boincer umatlas      4096 Nov 25 09:53 shared
[2025-11-25 17:12:24] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 09:53 input.tar.gz
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas         0 Nov 25 09:53 boinc_lockfile
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 09:53 pandaJob.out
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas        57 Nov 25 09:53 setup.sh.local
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas    991909 Nov 25 09:53 agis_schedconf.cvmfs.json
[2025-11-25 17:12:24] drwx------ 5 boincer umatlas      4096 Nov 25 09:53 pilot3
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas       533 Nov 25 17:02 boinc_task_state.xml
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas      5955 Nov 25 17:09 init_data.xml
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas        95 Nov 25 17:10 pilot_heartbeat.json
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas 927431889 Nov 25 17:10 HITS.47556137._009942.pool.root.1
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas      1065 Nov 25 17:11 memory_monitor_summary.json
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas   1516240 Nov 25 17:11 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas   2199035 Nov 25 17:11 log.47556137._009942.job.log.tgz.1
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas      8662 Nov 25 17:11 heartbeat.json
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas        29 Nov 25 17:12 wrapper_checkpoint.txt
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 17:12 boinc_mmap_file
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas      4738 Nov 25 17:12 pilotlog.txt
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas   3690553 Nov 25 17:12 log.47556137._009942.job.log.1
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas       353 Nov 25 17:12 output.list
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas       620 Nov 25 17:12 runtime_log
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas   5908480 Nov 25 17:12 result.tar.gz
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas      9340 Nov 25 17:12 runtime_log.err
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas       669 Nov 25 17:12 JhbKDmwJdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0PLKDmrvtzKn.diag
[2025-11-25 17:12:24] -rw-r--r-- 1 boincer umatlas     21253 Nov 25 17:12 stderr.txt
[2025-11-25 17:12:24] HITS file was successfully produced:
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas 927431889 Nov 25 17:10 shared/HITS.pool.root.1
[2025-11-25 17:12:24]  *** Contents of shared directory: ***
[2025-11-25 17:12:24] total 1315504
[2025-11-25 17:12:24] -rw-r--r-- 2 boincer umatlas 413116084 Nov 25 09:53 ATLAS.root_0
[2025-11-25 17:12:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 09:53 start_atlas.sh
[2025-11-25 17:12:24] -rw-r--r-- 2 boincer umatlas    590101 Nov 25 09:53 input.tar.gz
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas 927431889 Nov 25 17:10 HITS.pool.root.1
[2025-11-25 17:12:24] -rw------- 1 boincer umatlas   5908480 Nov 25 17:12 result.tar.gz
17:12:25 (15850): run_atlas exited; CPU time 295159.356934
17:12:25 (15850): called boinc_finish(0)

</stderr_txt>
]]>

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