Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:28:54 (1511389): wrapper (7.7.26015): starting
11:28:54 (1511389): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 11:28:54] Arguments: --nthreads 8
[2025-11-25 11:28:54] Threads: 8
[2025-11-25 11:28:54] Checking for CVMFS
[2025-11-25 11:28:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:28:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:28:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:28:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:28:56] 2.13.3.0 11226 27153 341012 153289 1 137 27043561 32935937 19108 16776704 0 62410824 99.488 85957845 40501 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 11:28:56] CVMFS is ok
[2025-11-25 11:28:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:28:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:28:56] Further information can be found at the LHC@home message board.
[2025-11-25 11:28:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:28:56] Checking for apptainer binary...
[2025-11-25 11:28:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:28:56] Running /usr/bin/apptainer --version
[2025-11-25 11:28:56] apptainer version 1.4.4-1.el9
[2025-11-25 11:28:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:28:56] c6-2-29-3.aglt2.org
[2025-11-25 11:28:56] apptainer works
[2025-11-25 11:28:56] Set ATHENA_PROC_NUMBER=8
[2025-11-25 11:28:56] Set ATHENA_CORE_NUMBER=8
[2025-11-25 11:28:57] Starting ATLAS job with PandaID=6895377447
[2025-11-25 11:28:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:33:05]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:33:05] 2025-11-26 04:32:31,019 | INFO     | time since job start (43381s) is within the limit (172800.0s)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,698 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 23:33:05] 2025-11-26 04:32:31,706 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3027.9438035714297
[2025-11-25 23:33:05] 2025-11-26 04:32:31,724 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895377447/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,724 | INFO     | extracted standard info from prmon json
[2025-11-25 23:33:05] 2025-11-26 04:32:31,725 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:33:05] 2025-11-26 04:32:31,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:33:05] 2025-11-26 04:32:31,748 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:33:05] 2025-11-26 04:32:31,749 | INFO     | sum of square deviations: 110978495490.59277
[2025-11-25 23:33:05] 2025-11-26 04:32:31,773 | INFO     | monitor loop #2851: job 0:6895377447 is in state 'finished'
[2025-11-25 23:33:05] 2025-11-26 04:32:31,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,774 | INFO     | sum of deviations: 932192938140.283
[2025-11-25 23:33:05] 2025-11-26 04:32:31,774 | INFO     | mean x: 1764109882.6239436
[2025-11-25 23:33:05] 2025-11-26 04:32:31,774 | INFO     | mean y: 2904749.0422535213
[2025-11-25 23:33:05] 2025-11-26 04:32:31,774 | INFO     | intersect: -14815198230.421194
[2025-11-25 23:33:05] 2025-11-26 04:32:31,775 | INFO     | chi2: 10.361328005061617
[2025-11-25 23:33:05] 2025-11-26 04:32:31,776 | INFO     | sum of square deviations: 108650518476.73187
[2025-11-25 23:33:05] 2025-11-26 04:32:31,799 | INFO     | sum of deviations: 1172538430773.7043
[2025-11-25 23:33:05] 2025-11-26 04:32:31,799 | INFO     | mean x: 1764109730.1319149
[2025-11-25 23:33:05] 2025-11-26 04:32:31,799 | INFO     | mean y: 2920490.239716312
[2025-11-25 23:33:05] 2025-11-26 04:32:31,799 | INFO     | intersect: -19035060033.75085
[2025-11-25 23:33:05] 2025-11-26 04:32:31,800 | INFO     | chi2: 7.04209902403114
[2025-11-25 23:33:05] 2025-11-26 04:32:31,800 | INFO     | current chi2=7.04209902403114 (change=32.03478337341506 %)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,801 | INFO     | sum of square deviations: 106355332775.2799
[2025-11-25 23:33:05] 2025-11-26 04:32:31,822 | INFO     | sum of deviations: 1441951332920.3184
[2025-11-25 23:33:05] 2025-11-26 04:32:31,823 | INFO     | mean x: 1764109577.64
[2025-11-25 23:33:05] 2025-11-26 04:32:31,823 | INFO     | mean y: 2938388.41
[2025-11-25 23:33:05] 2025-11-26 04:32:31,823 | INFO     | intersect: -23914622588.718006
[2025-11-25 23:33:05] 2025-11-26 04:32:31,824 | INFO     | chi2: 3.1468925412150583
[2025-11-25 23:33:05] 2025-11-26 04:32:31,824 | INFO     | current chi2=3.1468925412150583 (change=55.31314554827619 %)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,825 | INFO     | sum of square deviations: 104092663125.03035
[2025-11-25 23:33:05] 2025-11-26 04:32:31,843 | INFO     | sum of deviations: 1503937077244.7935
[2025-11-25 23:33:05] 2025-11-26 04:32:31,843 | INFO     | mean x: 1764109425.1467626
[2025-11-25 23:33:05] 2025-11-26 04:32:31,843 | INFO     | mean y: 2942558.7079136693
[2025-11-25 23:33:05] 2025-11-26 04:32:31,843 | INFO     | intersect: -25485016853.075478
[2025-11-25 23:33:05] 2025-11-26 04:32:31,844 | INFO     | chi2: 2.7404799336057772
[2025-11-25 23:33:05] 2025-11-26 04:32:31,844 | INFO     | current chi2=2.7404799336057772 (change=12.914727855701091 %)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,844 | INFO     | right removable region: 694
[2025-11-25 23:33:05] 2025-11-26 04:32:31,845 | INFO     | sum of square deviations: 108650031696.73192
[2025-11-25 23:33:05] 2025-11-26 04:32:31,867 | INFO     | sum of deviations: 707910104809.0549
[2025-11-25 23:33:05] 2025-11-26 04:32:31,867 | INFO     | mean x: 1764110035.1319149
[2025-11-25 23:33:05] 2025-11-26 04:32:31,867 | INFO     | mean y: 2919424.3219858157
[2025-11-25 23:33:05] 2025-11-26 04:32:31,867 | INFO     | intersect: -11491152877.01636
[2025-11-25 23:33:05] 2025-11-26 04:32:31,868 | INFO     | chi2: 7.8466659595504105
[2025-11-25 23:33:05] 2025-11-26 04:32:31,868 | INFO     | current chi2=7.8466659595504105 (change=24.269688637236154 %)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,868 | INFO     | left removable region: 10
[2025-11-25 23:33:05] 2025-11-26 04:32:31,869 | INFO     | sum of square deviations: 99227623610.2617
[2025-11-25 23:33:05] 2025-11-26 04:32:31,888 | INFO     | sum of deviations: 1244061255201.33
[2025-11-25 23:33:05] 2025-11-26 04:32:31,888 | INFO     | mean x: 1764109699.6564329
[2025-11-25 23:33:05] 2025-11-26 04:32:31,888 | INFO     | mean y: 2961532.856725146
[2025-11-25 23:33:05] 2025-11-26 04:32:31,888 | INFO     | intersect: -22114473586.696625
[2025-11-25 23:33:05] 2025-11-26 04:32:31,889 | INFO     | chi2: 0.08332540497977341
[2025-11-25 23:33:05] 2025-11-26 04:32:31,889 | INFO     | current memory leak: 12.54 B/s (using 684 data points, chi2=0.08)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,890 | INFO     | could have reported an average CPU frequency of 2968 MHz (27 samples)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,890 | INFO     | ..............................
[2025-11-25 23:33:05] 2025-11-26 04:32:31,890 | INFO     | . Timing measurements:
[2025-11-25 23:33:05] 2025-11-26 04:32:31,891 | INFO     | . get job = 0 s
[2025-11-25 23:33:05] 2025-11-26 04:32:31,891 | INFO     | . initial setup = 3 s
[2025-11-25 23:33:05] 2025-11-26 04:32:31,891 | INFO     | . payload setup = 23 s
[2025-11-25 23:33:05] 2025-11-26 04:32:31,891 | INFO     | . stage-in = 0 s
[2025-11-25 23:33:05] 2025-11-26 04:32:31,891 | INFO     | . payload execution = 43274 s
[2025-11-25 23:33:05] 2025-11-26 04:32:31,891 | INFO     | . stage-out = 7 s
[2025-11-25 23:33:05] 2025-11-26 04:32:31,891 | INFO     | . log creation = 2 s
[2025-11-25 23:33:05] 2025-11-26 04:32:31,891 | INFO     | ..............................
[2025-11-25 23:33:05] 2025-11-26 04:32:31,983 | INFO     | 
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | job summary report
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | --------------------------------------------------
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | PanDA job id: 6895377447
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | task id: 47556137
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | errors: (none)
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | pilot state: finished 
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | transexitcode: 0
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | exeerrorcode: 0
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | exeerrordiag: 
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | exitcode: 0
[2025-11-25 23:33:05] 2025-11-26 04:32:31,984 | INFO     | exitmsg: OK
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | cpuconsumptiontime: 232193 s
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | nevents: 1000
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | neventsw: 0
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | pid: 1526662
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | pgrp: 1526662
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | corecount: 8
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | event service: False
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 19: 2284582, 23: 2284610, 43302: 2330561, 43303: 2330688, 43310: 2339738, 43311: 2339794, 43341: 2340040}
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | --------------------------------------------------
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | 
[2025-11-25 23:33:05] 2025-11-26 04:32:31,985 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 23:33:05] 2025-11-26 04:32:32,095 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,096 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:33:05] 2025-11-26 04:32:32,097 | INFO     | job 6895377447 has completed (purged errors)
[2025-11-25 23:33:05] 2025-11-26 04:32:32,098 | INFO     | overall cleanup function is called
[2025-11-25 23:33:05] 2025-11-26 04:32:33,126 | INFO     | --- collectZombieJob: --- 10, [1526662]
[2025-11-25 23:33:05] 2025-11-26 04:32:33,126 | INFO     | zombie collector waiting for pid 1526662
[2025-11-25 23:33:05] 2025-11-26 04:32:33,126 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:33:05] 2025-11-26 04:32:33,126 | INFO     | collected zombie processes
[2025-11-25 23:33:05] 2025-11-26 04:32:33,126 | INFO     | will attempt to kill all subprocesses of pid=1526662
[2025-11-25 23:33:05] 2025-11-26 04:32:33,837 | INFO     | process IDs to be killed: [1526662] (in reverse order)
[2025-11-25 23:33:05] 2025-11-26 04:32:34,073 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:33:05] 2025-11-26 04:32:34,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:33:05] 2025-11-26 04:32:34,098 | INFO     | did not find any defunct processes belonging to 1526662
[2025-11-25 23:33:05] 2025-11-26 04:32:34,127 | INFO     | did not find any defunct processes belonging to 1526662
[2025-11-25 23:33:05] 2025-11-26 04:32:34,133 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:33:05] 2025-11-26 04:32:34,133 | INFO     | ready for new job
[2025-11-25 23:33:05] 2025-11-26 04:32:34,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:33:05] 2025-11-26 04:32:34,137 | INFO     | ***************************************
[2025-11-25 23:33:05] 2025-11-26 04:32:34,141 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:33:05] 2025-11-26 04:32:34,141 | INFO     | ***************************************
[2025-11-25 23:33:05] 2025-11-26 04:32:34,141 | INFO     | 
[2025-11-25 23:33:05] 2025-11-26 04:32:34,144 | INFO     | architecture information:
[2025-11-25 23:33:05] 2025-11-26 04:32:34,148 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:33:05] 2025-11-26 04:32:34,188 | INFO     | cat /etc/os-release:
[2025-11-25 23:33:05] NAME="CentOS Linux"
[2025-11-25 23:33:05] VERSION="7 (Core)"
[2025-11-25 23:33:05] ID="centos"
[2025-11-25 23:33:05] ID_LIKE="rhel fedora"
[2025-11-25 23:33:05] VERSION_ID="7"
[2025-11-25 23:33:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:33:05] ANSI_COLOR="0;31"
[2025-11-25 23:33:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:33:05] HOME_URL="https://www.centos.org/"
[2025-11-25 23:33:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:33:05] 
[2025-11-25 23:33:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:33:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:33:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:33:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:33:05] 
[2025-11-25 23:33:05] 2025-11-26 04:32:34,188 | INFO     | ***************************************
[2025-11-25 23:33:05] 2025-11-26 04:32:34,692 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 23:33:05] 2025-11-26 04:32:34,733 | INFO     | sufficient remaining disk space (69247959040 B)
[2025-11-25 23:33:05] 2025-11-26 04:32:34,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:33:05] 2025-11-26 04:32:34,734 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:33:05] 2025-11-26 04:32:34,734 | INFO     | update_server=False
[2025-11-25 23:33:05] 2025-11-26 04:32:34,734 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:33:05] 2025-11-26 04:32:34,734 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:33:05] 2025-11-26 04:32:34,801 | INFO     | all payload control threads have been joined
[2025-11-25 23:33:05] 2025-11-26 04:32:35,268 | INFO     | all job control threads have been joined
[2025-11-25 23:33:05] 2025-11-26 04:32:35,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:33:05] 2025-11-26 04:32:35,301 | INFO     | aborting loop
[2025-11-25 23:33:05] 2025-11-26 04:32:35,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:33:05] 2025-11-26 04:32:35,739 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:35,806 | INFO     | [payload] control thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:35,848 | INFO     | all data control threads have been joined
[2025-11-25 23:33:05] 2025-11-26 04:32:36,054 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,274 | INFO     | [job] control thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,307 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,504 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,572 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,573 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,573 | INFO     | [job] validate thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,741 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,812 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,813 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:36,854 | INFO     | [data] control thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:37,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:33:05] 2025-11-26 04:32:37,043 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:38,006 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:39,534 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:33:05] 2025-11-26 04:32:44,107 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:33:05] 2025-11-26 04:32:44,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139690074019648)>', '<ExcThread(monitor, started 139689424045824)>']
[2025-11-25 23:33:05] 2025-11-26 04:32:49,723 | INFO     | all workflow threads have been joined
[2025-11-25 23:33:05] 2025-11-26 04:32:49,723 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:33:05] 2025-11-26 04:32:49,723 | INFO     | traces error code: 0
[2025-11-25 23:33:05] 2025-11-26 04:32:49,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:33:05] 2025-11-26 04:33:04,767 | INFO     | PID=1515070 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:33:05] 2025-11-26 04:33:04,767 | INFO     | .. there are 24 such processes running
[2025-11-25 23:33:05] 2025-11-26 04:33:04,767 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:33:05] 2025-11-26 04:33:04,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:33:05] 2025-11-26 04:33:04,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:33:05] 2025-11-26 04:33:04,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:33:05] 2025-11-26 04:33:04,767 | INFO     | [monitor] control thread has ended
[2025-11-25 23:33:05] 2025-11-26 04:33:04,950 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:33:05] 2025-11-26 04:33:04,969 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:33:05] 2025-11-26 04:33:04,983 [wrapper] pilotpid: 1515070
[2025-11-25 23:33:05] 2025-11-26 04:33:04,998 [wrapper] Pilot exit status: 0
[2025-11-25 23:33:05] 2025-11-26 04:33:05,096 [wrapper] pandaids: 6895377447
[2025-11-25 23:33:05] 2025-11-26 04:33:05,259 [wrapper] cleanup supervisor_pilot 3674372 1515071
[2025-11-25 23:33:05] 2025-11-26 04:33:05,271 [wrapper] Test setup, not cleaning
[2025-11-25 23:33:05] 2025-11-26 04:33:05,286 [wrapper] apfmon messages muted
[2025-11-25 23:33:05] 2025-11-26 04:33:05,317 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:33:05] 2025-11-26 04:33:05,332 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:33:05]  *** Error codes and diagnostics ***
[2025-11-25 23:33:05]     "exeErrorCode": 0,
[2025-11-25 23:33:05]     "exeErrorDiag": "",
[2025-11-25 23:33:05]     "pilotErrorCode": 0,
[2025-11-25 23:33:05]     "pilotErrorDiag": "",
[2025-11-25 23:33:05]  *** Listing of results directory ***
[2025-11-25 23:33:05] total 1323276
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 19:34 pilot3.tar.gz
[2025-11-25 23:33:05] -rwx------. 1 boincer umatlas     36292 Nov 23 19:59 runpilot2-wrapper.sh
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 19:59 queuedata.json
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas       100 Nov 25 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:33:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 11:28 run_atlas
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas       105 Nov 25 11:28 job.xml
[2025-11-25 23:33:05] -rw-r--r--. 2 boincer umatlas 410782186 Nov 25 11:28 EVNT.47483658._000971.pool.root.1
[2025-11-25 23:33:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 11:28 start_atlas.sh
[2025-11-25 23:33:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 11:28 shared
[2025-11-25 23:33:05] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 11:28 input.tar.gz
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas         0 Nov 25 11:28 boinc_lockfile
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 11:28 pandaJob.out
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas        57 Nov 25 11:28 setup.sh.local
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas    991543 Nov 25 11:29 agis_schedconf.cvmfs.json
[2025-11-25 23:33:05] drwx------. 5 boincer umatlas      4096 Nov 25 11:29 pilot3
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas       533 Nov 25 23:15 boinc_task_state.xml
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 23:29 init_data.xml
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas 924811866 Nov 25 23:30 HITS.47556137._009575.pool.root.1
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas      1057 Nov 25 23:31 memory_monitor_summary.json
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas   1516240 Nov 25 23:31 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas   1955774 Nov 25 23:32 log.47556137._009575.job.log.tgz.1
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas        95 Nov 25 23:32 pilot_heartbeat.json
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas      8623 Nov 25 23:32 heartbeat.json
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas        29 Nov 25 23:33 wrapper_checkpoint.txt
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 23:33 boinc_mmap_file
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas       823 Nov 25 23:33 pilotlog.txt
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas   5802003 Nov 25 23:33 log.47556137._009575.job.log.1
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas       353 Nov 25 23:33 output.list
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas       620 Nov 25 23:33 runtime_log
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas   7782400 Nov 25 23:33 result.tar.gz
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas       661 Nov 25 23:33 SapNDmt6Zh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOKLKDmey4k3m.diag
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 23:33 runtime_log.err
[2025-11-25 23:33:05] -rw-r--r--. 1 boincer umatlas     21366 Nov 25 23:33 stderr.txt
[2025-11-25 23:33:05] HITS file was successfully produced:
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas 924811866 Nov 25 23:30 shared/HITS.pool.root.1
[2025-11-25 23:33:05]  *** Contents of shared directory: ***
[2025-11-25 23:33:05] total 1312500
[2025-11-25 23:33:05] -rw-r--r--. 2 boincer umatlas 410782186 Nov 25 11:28 ATLAS.root_0
[2025-11-25 23:33:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 11:28 start_atlas.sh
[2025-11-25 23:33:05] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 11:28 input.tar.gz
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas 924811866 Nov 25 23:30 HITS.pool.root.1
[2025-11-25 23:33:05] -rw-------. 1 boincer umatlas   7782400 Nov 25 23:33 result.tar.gz
23:33:07 (1511389): run_atlas exited; CPU time 233027.732911
23:33:07 (1511389): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN