Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 11:54:34 (3816): vboxwrapper version 26210
2025-11-27 11:54:34 (3816): BOINC client version: 7.14.2
2025-11-27 11:54:36 (3816): Detected: VirtualBox VboxManage Interface (Version: 5.2.8)
2025-11-27 11:54:37 (3816): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 11:54:37 (3816): Create VM. (boinc_ea096e9f583bff35, slot#0)
2025-11-27 11:54:37 (3816): Setting Memory Size for VM. (4400MB)
2025-11-27 11:54:38 (3816): Setting CPU Count for VM. (4)
2025-11-27 11:54:38 (3816): Setting Chipset Options for VM.
2025-11-27 11:54:38 (3816): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 11:54:39 (3816): Setting Boot Options for VM.
2025-11-27 11:54:39 (3816): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 11:54:39 (3816): Enabling VM Network Access.
2025-11-27 11:54:40 (3816): Disabling USB Support for VM.
2025-11-27 11:54:40 (3816): Disabling COM Port Support for VM.
2025-11-27 11:54:40 (3816): Disabling LPT Port Support for VM.
2025-11-27 11:54:40 (3816): Disabling Audio Support for VM.
2025-11-27 11:54:41 (3816): Disabling Clipboard Support for VM.
2025-11-27 11:54:41 (3816): Disabling Drag and Drop Support for VM.
2025-11-27 11:54:41 (3816): Adding storage controller(s) to VM.
2025-11-27 11:54:41 (3816): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 11:54:43 (3816): Adding VirtualBox Guest Additions to VM.
2025-11-27 11:54:43 (3816): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 11:54:43 (3816): forwarding host port 65111 to guest port 80
2025-11-27 11:54:43 (3816): Enabling remote desktop for VM.
2025-11-27 11:54:44 (3816): Enabling shared directory for VM.
2025-11-27 11:54:44 (3816): Starting VM using VBoxManage interface. (boinc_ea096e9f583bff35, slot#0)
2025-11-27 11:54:49 (3816): Successfully started VM. (PID = '12652')
2025-11-27 11:54:49 (3816): Reporting VM Process ID to BOINC.
2025-11-27 11:54:49 (3816): Guest Log: BIOS: VirtualBox 5.2.8
2025-11-27 11:54:49 (3816): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 11:54:49 (3816): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 11:54:49 (3816): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 11:54:49 (3816): Detected: Web Application Enabled (http://localhost:65111)
2025-11-27 11:54:49 (3816): Detected: Remote Desktop Enabled (localhost:65112)
2025-11-27 11:54:49 (3816): Preference change detected
2025-11-27 11:54:49 (3816): Setting CPU throttle for VM. (90%)
2025-11-27 11:54:50 (3816): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 11:54:51 (3816): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 11:54:51 (3816): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 11:54:54 (3816): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 11:54:54 (3816): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 11:54:54 (3816): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 11:55:03 (3816): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 11:55:03 (3816): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-27 11:55:17 (3816): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.000275 main     Log opened 2025-11-27T11:55:15.048051000Z
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.000460 main     OS Product: Linux
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.000542 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.000655 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.000733 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.000736 main     Process ID: 1307
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.000737 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.003263 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.004731 main     Error: Service 'control' failed to initialize: VERR_INVALID_PARAMETER
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.005016 main     Session 0 is about to close ...
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.005094 main     Stopping all guest processes ...
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.005167 main     Closing all guest files ...
2025-11-27 11:55:17 (3816): Guest Log: 00:00:00.005458 main     Ended.
2025-11-27 11:55:17 (3816): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 11:55:17 (3816): Guest Log: [INFO] Mounting shared directory
2025-11-27 11:55:17 (3816): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 11:55:22 (3816): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 11:55:22 (3816): Guest Log: [INFO] Detected branch: prod
2025-11-27 11:55:22 (3816): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 11:55:22 (3816): Guest Log: Copying input files
2025-11-27 11:55:28 (3816): Guest Log: Copied input files into RunAtlas.
2025-11-27 11:55:28 (3816): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 11:55:28 (3816): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 11:55:28 (3816): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 11:55:28 (3816): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 11:55:42 (3816): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 11:55:42 (3816): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 11:55:42 (3816): Guest Log: 2.6.3.0 1577 0 32184 153362 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 11:55:46 (3816): Guest Log: copied the webapp to /var/www
2025-11-27 11:55:46 (3816): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-27 11:55:46 (3816): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-27 11:55:47 (3816): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 11:55:47 (3816): Guest Log:  *** Starting ATLAS job. (PandaID=6895356802 taskID=47556137) ***
2025-11-27 13:34:50 (3816): Status Report: Elapsed Time: '6000.065264'
2025-11-27 13:34:50 (3816): Status Report: CPU Time: '18755.345026'
2025-11-27 15:14:51 (3816): Status Report: Elapsed Time: '12000.325193'
2025-11-27 15:14:51 (3816): Status Report: CPU Time: '40347.973839'
2025-11-27 16:54:52 (3816): Status Report: Elapsed Time: '18000.325193'
2025-11-27 16:54:52 (3816): Status Report: CPU Time: '61943.005068'
2025-11-27 18:34:52 (3816): Status Report: Elapsed Time: '24000.325193'
2025-11-27 18:34:52 (3816): Status Report: CPU Time: '83539.658707'
2025-11-27 20:14:53 (3816): Status Report: Elapsed Time: '30000.325193'
2025-11-27 20:14:53 (3816): Status Report: CPU Time: '105137.513554'
2025-11-27 21:54:53 (3816): Status Report: Elapsed Time: '36000.325193'
2025-11-27 21:54:53 (3816): Status Report: CPU Time: '126736.086006'
2025-11-27 23:34:54 (3816): Status Report: Elapsed Time: '42000.325193'
2025-11-27 23:34:54 (3816): Status Report: CPU Time: '148334.518056'
2025-11-28 01:14:55 (3816): Status Report: Elapsed Time: '48000.325193'
2025-11-28 01:14:55 (3816): Status Report: CPU Time: '169930.376090'
2025-11-28 02:54:55 (3816): Status Report: Elapsed Time: '54000.325193'
2025-11-28 02:54:55 (3816): Status Report: CPU Time: '191529.510145'
2025-11-28 04:34:56 (3816): Status Report: Elapsed Time: '60000.325193'
2025-11-28 04:34:56 (3816): Status Report: CPU Time: '213125.882983'
2025-11-28 06:14:57 (3816): Status Report: Elapsed Time: '66000.325193'
2025-11-28 06:14:57 (3816): Status Report: CPU Time: '234723.410228'
2025-11-28 07:54:57 (3816): Status Report: Elapsed Time: '72000.325193'
2025-11-28 07:54:57 (3816): Status Report: CPU Time: '256322.762684'
2025-11-28 09:16:47 (3816): Guest Log:  *** Job finished ***
2025-11-28 09:16:47 (3816): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:32,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:32,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:36,096 | INFO     | [monitor] cgroup control has ended
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:38,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139764372510528)>', '<ExcThread(monitor, started 139763185080064)>']
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:38,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:38,186 | INFO     | [monitor] control thread has ended
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,133 | INFO     | all workflow threads have been joined
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,133 | INFO     | end of generic workflow (traces error code: 0)
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,134 | INFO     | traces error code: 0
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,134 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,544 [wrapper] ==== pilot stdout END ====
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,554 [wrapper] ==== wrapper stdout RESUME ====
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,564 [wrapper] pilotpid: 5979
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,571 [wrapper] Pilot exit status: 0
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,641 [wrapper] pandaids: 6895356802
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,682 [wrapper] cleanup supervisor_pilot 12606 5980
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,688 [wrapper] Test setup, not cleaning
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,693 [wrapper] apfmon messages muted
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,698 [wrapper] ==== wrapper stdout END ====
2025-11-28 09:16:47 (3816): Guest Log: 2025-11-28 09:16:43,702 [wrapper] ==== wrapper stderr END ====
2025-11-28 09:16:47 (3816): Guest Log:  *** Error codes and diagnostics ***
2025-11-28 09:16:47 (3816): Guest Log:     "exeErrorCode": 0,
2025-11-28 09:16:47 (3816): Guest Log:     "exeErrorDiag": "",
2025-11-28 09:16:47 (3816): Guest Log:     "pilotErrorCode": 0,
2025-11-28 09:16:47 (3816): Guest Log:     "pilotErrorDiag": "",
2025-11-28 09:16:47 (3816): Guest Log:  *** Listing of results directory ***
2025-11-28 09:16:47 (3816): Guest Log: total 936104
2025-11-28 09:16:47 (3816): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 11:12 pilot3.tar.gz
2025-11-28 09:16:47 (3816): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 11:27 queuedata.json
2025-11-28 09:16:47 (3816): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 11:28 runpilot2-wrapper.sh
2025-11-28 09:16:47 (3816): Guest Log: -rwxr-xr-x. 1 atlas atlas      8891 Nov 27 11:55 init_data.xml
2025-11-28 09:16:47 (3816): Guest Log: -rwxr-xr-x. 1 atlas atlas    590108 Nov 27 11:55 input.tar.gz
2025-11-28 09:16:47 (3816): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 11:55 start_atlas.sh
2025-11-28 09:16:47 (3816): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 11:55 EVNT.47483658._000704.pool.root.1 -> /data/./ATLAS.root_0
2025-11-28 09:16:47 (3816): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 27 11:55 pandaJob.out
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas    991572 Nov 27 11:57 agis_schedconf.cvmfs.json
2025-11-28 09:16:47 (3816): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 11:57 pilot3
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas 931230745 Nov 28 09:15 HITS.47556137._006996.pool.root.1
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 28 09:15 memory_monitor_summary.json
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 28 09:15 agis_ddmendpoints.agis.ALL.json
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas   1879287 Nov 28 09:15 log.47556137._006996.job.log.tgz.1
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas      8656 Nov 28 09:15 heartbeat.json
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas        95 Nov 28 09:16 pilot_heartbeat.json
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 28 09:16 pilotlog.txt
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas   9865587 Nov 28 09:16 log.47556137._006996.job.log.1
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas       353 Nov 28 09:16 output.list
2025-11-28 09:16:47 (3816): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 28 09:16 runtime_log
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas  11765760 Nov 28 09:16 result.tar.gz
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas       667 Nov 28 09:16 UqJODmxRNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIqKKDm883lnm.diag
2025-11-28 09:16:47 (3816): Guest Log: -rw-r--r--. 1 atlas atlas      8759 Nov 28 09:16 runtime_log.err
2025-11-28 09:16:47 (3816): Guest Log: Looking for outputfile HITS.47556137._006996.pool.root.1
2025-11-28 09:16:47 (3816): Guest Log: HITS file was successfully produced
2025-11-28 09:16:47 (3816): Guest Log: -rw-------. 1 atlas atlas 931230745 Nov 28 09:15 /home/atlas/RunAtlas/HITS.47556137._006996.pool.root.1
2025-11-28 09:16:52 (3816): Guest Log: Successfully finished the ATLAS job!
2025-11-28 09:16:53 (3816): Guest Log: Copying the results back to the shared directory!
2025-11-28 09:16:53 (3816): Guest Log:  *** Contents of shared directory: ***
2025-11-28 09:16:53 (3816): Guest Log: total 1322292
2025-11-28 09:16:53 (3816): Guest Log: -rwxrwxrwx. 1 root root 410402722 Nov 27 11:54 ATLAS.root_0
2025-11-28 09:16:53 (3816): Guest Log: -rwxrwxrwx. 1 root root 931230745 Nov 28  2025 HITS.pool.root.1
2025-11-28 09:16:53 (3816): Guest Log: -rwxrwxrwx. 1 root root      8891 Nov 27 11:54 init_data.xml
2025-11-28 09:16:53 (3816): Guest Log: -rwxrwxrwx. 1 root root    590108 Nov 25 14:57 input.tar.gz
2025-11-28 09:16:53 (3816): Guest Log: -rwxrwxrwx. 1 root root  11765760 Nov 28  2025 result.tar.gz
2025-11-28 09:16:53 (3816): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 25 14:57 start_atlas.sh
2025-11-28 09:16:53 (3816): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-28 09:16:53 (3816): VM Completion File Detected.
2025-11-28 09:16:53 (3816): Powering off VM.
2025-11-28 09:16:54 (3816): Successfully stopped VM.
2025-11-28 09:16:54 (3816): Deregistering VM. (boinc_ea096e9f583bff35, slot#0)
2025-11-28 09:16:54 (3816): Removing network bandwidth throttle group from VM.
2025-11-28 09:16:55 (3816): Removing VM from VirtualBox.
2025-11-28 09:17:01 (3816): called boinc_finish(0)

</stderr_txt>
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