Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:50:19 (21393): wrapper (7.7.26015): starting
08:50:19 (21393): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 08:50:19] Arguments: --nthreads 8
[2025-11-25 08:50:19] Threads: 8
[2025-11-25 08:50:19] Checking for CVMFS
[2025-11-25 08:50:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 08:50:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 08:50:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 08:50:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 08:50:19] 2.11.2.0 8814 116303 128360 153284 3 90 11639707 18432001 1692 130560 0 83692979 99.973 4957048 31640 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 08:50:19] CVMFS is ok
[2025-11-25 08:50:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 08:50:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 08:50:19] Further information can be found at the LHC@home message board.
[2025-11-25 08:50:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 08:50:19] Checking for apptainer binary...
[2025-11-25 08:50:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 08:50:19] Running /usr/bin/apptainer --version
[2025-11-25 08:50:19] apptainer version 1.3.2-1.el7
[2025-11-25 08:50:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 08:50:20] c-206-19.aglt2.org
[2025-11-25 08:50:20] apptainer works
[2025-11-25 08:50:20] Set ATHENA_PROC_NUMBER=8
[2025-11-25 08:50:20] Set ATHENA_CORE_NUMBER=8
[2025-11-25 08:50:20] Starting ATLAS job with PandaID=6895816612
[2025-11-25 08:50:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:01:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:01:32] 2025-11-26 09:00:26,379 | INFO     | time since job start (68996s) is within the limit (172800.0s)
[2025-11-26 04:01:32] 2025-11-26 09:00:27,722 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 04:01:32] 2025-11-26 09:00:27,728 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.125
[2025-11-26 04:01:32] 2025-11-26 09:00:27,733 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895816612/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:01:32] 2025-11-26 09:00:27,734 | INFO     | extracted standard info from prmon json
[2025-11-26 04:01:32] 2025-11-26 09:00:27,734 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:01:32] 2025-11-26 09:00:27,734 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:01:32] 2025-11-26 09:00:27,764 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:01:32] 2025-11-26 09:00:27,766 | INFO     | sum of square deviations: 448606198690.6862
[2025-11-26 04:01:32] 2025-11-26 09:00:27,807 | INFO     | sum of deviations: 2234330447841.914
[2025-11-26 04:01:32] 2025-11-26 09:00:27,807 | INFO     | mean x: 1764113121.5844386
[2025-11-26 04:01:32] 2025-11-26 09:00:27,808 | INFO     | mean y: 2862688.870026525
[2025-11-26 04:01:32] 2025-11-26 09:00:27,808 | INFO     | intersect: -8783488619.911812
[2025-11-26 04:01:32] 2025-11-26 09:00:27,809 | INFO     | chi2: 5.692460762506512
[2025-11-26 04:01:32] 2025-11-26 09:00:27,811 | INFO     | sum of square deviations: 442682968301.47015
[2025-11-26 04:01:32] 2025-11-26 09:00:27,852 | INFO     | sum of deviations: 2580882832387.2124
[2025-11-26 04:01:32] 2025-11-26 09:00:27,852 | INFO     | mean x: 1764112969.0870337
[2025-11-26 04:01:32] 2025-11-26 09:00:27,852 | INFO     | mean y: 2871606.5079928953
[2025-11-26 04:01:32] 2025-11-26 09:00:27,852 | INFO     | intersect: -10282070897.10275
[2025-11-26 04:01:32] 2025-11-26 09:00:27,854 | INFO     | chi2: 2.92612561965426
[2025-11-26 04:01:32] 2025-11-26 09:00:27,854 | INFO     | current chi2=2.92612561965426 (change=48.59647274290873 %)
[2025-11-26 04:01:32] 2025-11-26 09:00:27,856 | INFO     | sum of square deviations: 436812110987.2402
[2025-11-26 04:01:32] 2025-11-26 09:00:27,896 | INFO     | sum of deviations: 2693344867039.0977
[2025-11-26 04:01:32] 2025-11-26 09:00:27,897 | INFO     | mean x: 1764112816.589652
[2025-11-26 04:01:32] 2025-11-26 09:00:27,897 | INFO     | mean y: 2874523.6806422835
[2025-11-26 04:01:32] 2025-11-26 09:00:27,897 | INFO     | intersect: -10874489175.556208
[2025-11-26 04:01:32] 2025-11-26 09:00:27,899 | INFO     | chi2: 2.4612781743687386
[2025-11-26 04:01:32] 2025-11-26 09:00:27,899 | INFO     | current chi2=2.4612781743687386 (change=15.886106945075248 %)
[2025-11-26 04:01:32] 2025-11-26 09:00:27,899 | INFO     | right removable region: 1120
[2025-11-26 04:01:32] 2025-11-26 09:00:27,901 | INFO     | sum of square deviations: 442682565091.47003
[2025-11-26 04:01:32] 2025-11-26 09:00:27,941 | INFO     | sum of deviations: 1932800879925.3176
[2025-11-26 04:01:32] 2025-11-26 09:00:27,941 | INFO     | mean x: 1764113274.0870337
[2025-11-26 04:01:32] 2025-11-26 09:00:27,941 | INFO     | mean y: 2870443.323268206
[2025-11-26 04:01:32] 2025-11-26 09:00:27,941 | INFO     | intersect: -7699442584.836812
[2025-11-26 04:01:32] 2025-11-26 09:00:27,943 | INFO     | chi2: 3.5821100647915136
[2025-11-26 04:01:32] 2025-11-26 09:00:27,943 | INFO     | current chi2=3.5821100647915136 (change=37.072731561275894 %)
[2025-11-26 04:01:32] 2025-11-26 09:00:27,945 | INFO     | sum of square deviations: 436811441573.59503
[2025-11-26 04:01:32] 2025-11-26 09:00:27,978 | INFO     | monitor loop #4920: job 0:6895816612 is in state 'finished'
[2025-11-26 04:01:32] 2025-11-26 09:00:27,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:01:32] 2025-11-26 09:00:27,986 | INFO     | sum of deviations: 1844330288301.8176
[2025-11-26 04:01:32] 2025-11-26 09:00:27,986 | INFO     | mean x: 1764113426.587868
[2025-11-26 04:01:32] 2025-11-26 09:00:27,986 | INFO     | mean y: 2872740.98661909
[2025-11-26 04:01:32] 2025-11-26 09:00:27,987 | INFO     | intersect: -7445668013.657819
[2025-11-26 04:01:32] 2025-11-26 09:00:27,988 | INFO     | chi2: 3.4980077294278016
[2025-11-26 04:01:32] 2025-11-26 09:00:27,988 | INFO     | current chi2=3.4980077294278016 (change=2.3478434174971943 %)
[2025-11-26 04:01:32] 2025-11-26 09:00:27,989 | INFO     | left removable region: 20
[2025-11-26 04:01:32] 2025-11-26 09:00:27,990 | INFO     | sum of square deviations: 412720241257.72656
[2025-11-26 04:01:32] 2025-11-26 09:00:28,029 | INFO     | sum of deviations: 2179426884122.4978
[2025-11-26 04:01:32] 2025-11-26 09:00:28,029 | INFO     | mean x: 1764113396.091818
[2025-11-26 04:01:32] 2025-11-26 09:00:28,029 | INFO     | mean y: 2888165.9554545456
[2025-11-26 04:01:32] 2025-11-26 09:00:28,030 | INFO     | intersect: -9312759039.441141
[2025-11-26 04:01:32] 2025-11-26 09:00:28,031 | INFO     | chi2: 0.19862408740410425
[2025-11-26 04:01:32] 2025-11-26 09:00:28,031 | INFO     | current memory leak: 5.28 B/s (using 1100 data points, chi2=0.20)
[2025-11-26 04:01:32] 2025-11-26 09:00:28,033 | INFO     | could have reported an average CPU frequency of 2622 MHz (41 samples)
[2025-11-26 04:01:32] 2025-11-26 09:00:28,033 | INFO     | ..............................
[2025-11-26 04:01:32] 2025-11-26 09:00:28,033 | INFO     | . Timing measurements:
[2025-11-26 04:01:32] 2025-11-26 09:00:28,033 | INFO     | . get job = 0 s
[2025-11-26 04:01:32] 2025-11-26 09:00:28,033 | INFO     | . initial setup = 2 s
[2025-11-26 04:01:32] 2025-11-26 09:00:28,034 | INFO     | . payload setup = 5 s
[2025-11-26 04:01:32] 2025-11-26 09:00:28,034 | INFO     | . stage-in = 0 s
[2025-11-26 04:01:32] 2025-11-26 09:00:28,034 | INFO     | . payload execution = 68963 s
[2025-11-26 04:01:32] 2025-11-26 09:00:28,034 | INFO     | . stage-out = 3 s
[2025-11-26 04:01:32] 2025-11-26 09:00:28,034 | INFO     | . log creation = 0 s
[2025-11-26 04:01:32] 2025-11-26 09:00:28,034 | INFO     | ..............................
[2025-11-26 04:01:32] 2025-11-26 09:00:28,156 | INFO     | 
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | job summary report
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | --------------------------------------------------
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | PanDA job id: 6895816612
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | task id: 47556161
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | errors: (none)
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | pilot state: finished 
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | transexitcode: 0
[2025-11-26 04:01:32] 2025-11-26 09:00:28,157 | INFO     | exeerrorcode: 0
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | exeerrordiag: 
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | exitcode: 0
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | exitmsg: OK
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | cpuconsumptiontime: 534117 s
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | nevents: 1000
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | neventsw: 0
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | pid: 31579
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | pgrp: 31579
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | corecount: 8
[2025-11-26 04:01:32] 2025-11-26 09:00:28,158 | INFO     | event service: False
[2025-11-26 04:01:32] 2025-11-26 09:00:28,159 | INFO     | sizes: {0: 2284262, 4: 2284524, 11: 2284552, 68971: 2340582, 68972: 2340581, 68976: 2349659, 68977: 2349843, 68982: 2350185}
[2025-11-26 04:01:32] 2025-11-26 09:00:28,159 | INFO     | --------------------------------------------------
[2025-11-26 04:01:32] 2025-11-26 09:00:28,159 | INFO     | 
[2025-11-26 04:01:32] 2025-11-26 09:00:28,159 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 04:01:32] 2025-11-26 09:00:28,174 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,175 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,175 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,175 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,176 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,177 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,177 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,177 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,177 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,177 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,177 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:01:32] 2025-11-26 09:00:28,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,178 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:01:32] 2025-11-26 09:00:28,178 | INFO     | job 6895816612 has completed (purged errors)
[2025-11-26 04:01:32] 2025-11-26 09:00:28,179 | INFO     | overall cleanup function is called
[2025-11-26 04:01:32] 2025-11-26 09:00:29,195 | INFO     | --- collectZombieJob: --- 10, [31579]
[2025-11-26 04:01:32] 2025-11-26 09:00:29,196 | INFO     | zombie collector waiting for pid 31579
[2025-11-26 04:01:32] 2025-11-26 09:00:29,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:01:32] 2025-11-26 09:00:29,196 | INFO     | collected zombie processes
[2025-11-26 04:01:32] 2025-11-26 09:00:29,196 | INFO     | will attempt to kill all subprocesses of pid=31579
[2025-11-26 04:01:32] 2025-11-26 09:00:29,335 | INFO     | process IDs to be killed: [31579] (in reverse order)
[2025-11-26 04:01:32] 2025-11-26 09:00:29,377 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:01:32] 2025-11-26 09:00:29,378 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:01:32] 2025-11-26 09:00:29,383 | INFO     | did not find any defunct processes belonging to 31579
[2025-11-26 04:01:32] 2025-11-26 09:00:29,388 | INFO     | did not find any defunct processes belonging to 31579
[2025-11-26 04:01:32] 2025-11-26 09:00:29,390 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:01:32] 2025-11-26 09:00:29,390 | INFO     | ready for new job
[2025-11-26 04:01:32] 2025-11-26 09:00:29,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:01:32] 2025-11-26 09:00:29,395 | INFO     | ***************************************
[2025-11-26 04:01:32] 2025-11-26 09:00:29,395 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:01:32] 2025-11-26 09:00:29,396 | INFO     | ***************************************
[2025-11-26 04:01:32] 2025-11-26 09:00:29,396 | INFO     | 
[2025-11-26 04:01:32] 2025-11-26 09:00:29,397 | INFO     | architecture information:
[2025-11-26 04:01:32] 2025-11-26 09:00:29,397 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:01:32] 2025-11-26 09:00:29,413 | INFO     | cat /etc/os-release:
[2025-11-26 04:01:32] NAME="CentOS Linux"
[2025-11-26 04:01:32] VERSION="7 (Core)"
[2025-11-26 04:01:32] ID="centos"
[2025-11-26 04:01:32] ID_LIKE="rhel fedora"
[2025-11-26 04:01:32] VERSION_ID="7"
[2025-11-26 04:01:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:01:32] ANSI_COLOR="0;31"
[2025-11-26 04:01:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:01:32] HOME_URL="https://www.centos.org/"
[2025-11-26 04:01:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:01:32] 
[2025-11-26 04:01:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:01:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:01:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:01:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:01:32] 
[2025-11-26 04:01:32] 2025-11-26 09:00:29,413 | INFO     | ***************************************
[2025-11-26 04:01:32] 2025-11-26 09:00:29,916 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 04:01:32] 2025-11-26 09:00:29,926 | INFO     | sufficient remaining disk space (25439502336 B)
[2025-11-26 04:01:32] 2025-11-26 09:00:29,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:01:32] 2025-11-26 09:00:29,927 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:01:32] 2025-11-26 09:00:29,927 | INFO     | update_server=False
[2025-11-26 04:01:32] 2025-11-26 09:00:29,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:01:32] 2025-11-26 09:00:29,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:01:32] 2025-11-26 09:00:29,927 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:01:32] 2025-11-26 09:00:29,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:01:32] 2025-11-26 09:00:29,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:01:32] 2025-11-26 09:00:29,928 | INFO     | aborting loop
[2025-11-26 04:01:32] 2025-11-26 09:00:30,121 | INFO     | all job control threads have been joined
[2025-11-26 04:01:32] 2025-11-26 09:00:30,243 | INFO     | all data control threads have been joined
[2025-11-26 04:01:32] 2025-11-26 09:00:30,435 | INFO     | all payload control threads have been joined
[2025-11-26 04:01:32] 2025-11-26 09:00:30,932 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:30,933 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:30,933 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,126 | INFO     | [job] control thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,249 | INFO     | [data] control thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,296 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,438 | INFO     | [payload] control thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,515 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,570 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,682 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,769 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,876 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,934 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:31,985 | INFO     | [job] validate thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:33,936 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:01:32] 2025-11-26 09:00:59,617 | INFO     | PID=25114 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 04:01:32] 2025-11-26 09:00:59,617 | INFO     | .. there are 3 such processes running
[2025-11-26 04:01:32] 2025-11-26 09:00:59,618 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:01:32] 2025-11-26 09:00:59,618 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:01:32] 2025-11-26 09:00:59,618 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:01:32] 2025-11-26 09:01:25,111 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:01:32] 2025-11-26 09:01:27,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139992645318464)>', '<ExcThread(monitor, started 139992336672512)>']
[2025-11-26 04:01:32] 2025-11-26 09:01:27,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:01:32] 2025-11-26 09:01:27,766 | INFO     | [monitor] control thread has ended
[2025-11-26 04:01:32] 2025-11-26 09:01:32,153 | INFO     | all workflow threads have been joined
[2025-11-26 04:01:32] 2025-11-26 09:01:32,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:01:32] 2025-11-26 09:01:32,154 | INFO     | traces error code: 0
[2025-11-26 04:01:32] 2025-11-26 09:01:32,154 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:01:32] 2025-11-26 09:01:32,262 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:01:32] 2025-11-26 09:01:32,267 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:01:32] 2025-11-26 09:01:32,269 [wrapper] pilotpid: 25114
[2025-11-26 04:01:32] 2025-11-26 09:01:32,271 [wrapper] Pilot exit status: 0
[2025-11-26 04:01:32] 2025-11-26 09:01:32,278 [wrapper] pandaids: 6895816612
[2025-11-26 04:01:32] 2025-11-26 09:01:32,312 [wrapper] cleanup supervisor_pilot 25850 25115
[2025-11-26 04:01:32] 2025-11-26 09:01:32,314 [wrapper] Test setup, not cleaning
[2025-11-26 04:01:32] 2025-11-26 09:01:32,316 [wrapper] apfmon messages muted
[2025-11-26 04:01:32] 2025-11-26 09:01:32,318 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:01:32] 2025-11-26 09:01:32,320 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:01:32]  *** Error codes and diagnostics ***
[2025-11-26 04:01:32]     "exeErrorCode": 0,
[2025-11-26 04:01:32]     "exeErrorDiag": "",
[2025-11-26 04:01:32]     "pilotErrorCode": 0,
[2025-11-26 04:01:32]     "pilotErrorDiag": "",
[2025-11-26 04:01:32]  *** Listing of results directory ***
[2025-11-26 04:01:32] total 1322104
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 10:13 pilot3.tar.gz
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 10:57 queuedata.json
[2025-11-26 04:01:32] -rwx------ 1 boincer umatlas     36292 Nov 24 11:00 runpilot2-wrapper.sh
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas       100 Nov 25 08:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:01:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 08:50 run_atlas
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas       105 Nov 25 08:50 job.xml
[2025-11-26 04:01:32] -rw-r--r-- 2 boincer umatlas 411502085 Nov 25 08:50 EVNT.47483658._002051.pool.root.1
[2025-11-26 04:01:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 08:50 start_atlas.sh
[2025-11-26 04:01:32] drwxrwx--x 2 boincer umatlas      4096 Nov 25 08:50 shared
[2025-11-26 04:01:32] -rw-r--r-- 2 boincer umatlas    590103 Nov 25 08:50 input.tar.gz
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas         0 Nov 25 08:50 boinc_lockfile
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas      2784 Nov 25 08:50 pandaJob.out
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas        57 Nov 25 08:50 setup.sh.local
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas    991909 Nov 25 08:50 agis_schedconf.cvmfs.json
[2025-11-26 04:01:32] drwx------ 5 boincer umatlas      4096 Nov 25 08:50 pilot3
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas       533 Nov 26 03:47 boinc_task_state.xml
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas 914692705 Nov 26 03:59 HITS.47556161._000345.pool.root.1
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas        95 Nov 26 04:00 pilot_heartbeat.json
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas      1065 Nov 26 04:00 memory_monitor_summary.json
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas      5954 Nov 26 04:00 init_data.xml
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas   1516240 Nov 26 04:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas   2308331 Nov 26 04:00 log.47556161._000345.job.log.tgz.1
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas      8665 Nov 26 04:00 heartbeat.json
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 04:01 boinc_mmap_file
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas        29 Nov 26 04:01 wrapper_checkpoint.txt
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas      4821 Nov 26 04:01 pilotlog.txt
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas   9547924 Nov 26 04:01 log.47556161._000345.job.log.1
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas       353 Nov 26 04:01 output.list
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas       620 Nov 26 04:01 runtime_log
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas  11878400 Nov 26 04:01 result.tar.gz
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas       668 Nov 26 04:01 q3SMDm89nh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMkLKDm7JQX4n.diag
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 04:01 runtime_log.err
[2025-11-26 04:01:32] -rw-r--r-- 1 boincer umatlas     21306 Nov 26 04:01 stderr.txt
[2025-11-26 04:01:32] HITS file was successfully produced:
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas 914692705 Nov 26 03:59 shared/HITS.pool.root.1
[2025-11-26 04:01:32]  *** Contents of shared directory: ***
[2025-11-26 04:01:32] total 1307320
[2025-11-26 04:01:32] -rw-r--r-- 2 boincer umatlas 411502085 Nov 25 08:50 ATLAS.root_0
[2025-11-26 04:01:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 08:50 start_atlas.sh
[2025-11-26 04:01:32] -rw-r--r-- 2 boincer umatlas    590103 Nov 25 08:50 input.tar.gz
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas 914692705 Nov 26 03:59 HITS.pool.root.1
[2025-11-26 04:01:32] -rw------- 1 boincer umatlas  11878400 Nov 26 04:01 result.tar.gz
04:01:34 (21393): run_atlas exited; CPU time 533166.468418
04:01:34 (21393): called boinc_finish(0)

</stderr_txt>
]]>

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